BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938472
Length=1888
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55400.1 | Symbols: OVA1 | methionyl-tRNA synthetase / methi... 2981 0.0
> AT3G55400.1 | Symbols: OVA1 | methionyl-tRNA synthetase / methionine--tRNA
ligase / MetRS (cpMetRS) | chr3:20535631-20539067
REVERSE LENGTH=2097
Length=2097
Score = 2981 bits (1614), Expect = 0.0
Identities = 1802/1893 (95%), Gaps = 11/1893 (1%)
Strand=Plus/Plus
Query 1 GGTGAAGGTTCTC-TTAATCAATGGCGGCGAGGATAAACACTTCGCTTCATAACGCTCTC 59
|||| | || ||| || ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 48 GGTGGATGTCCTCTTTCATCAATGGCGGCGAGGATAAACACTTCGCTTCATAACGCCCTC 107
Query 60 TCTTTGTTAAACCCTTTTAACACTCCCCTCAATTA-CAAACCATTCAC--TT-GTAGAAA 115
||||| ||||| |||||||||||||||||||| || |||||||||| | || | |||||
Sbjct 108 TCTTTTTTAAAGCCTTTTAACACTCCCCTCAA-TACCAAACCATTCTCTTTTAGAAGAAA 166
Query 116 CAGCTTCAGATTTTCCAAAAAGCTTCCTTATTATTCTCAATCTTCCTCAGGGAAGAGAGC 175
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 167 CAGCTTCAGATTTTCCAAAAAGCTTCCTTATTATTCTCAGTTTTCCTCAGGGAAGAGAGC 226
Query 176 TCTCTATTGCACTTCCAGTTCCCAGGAAAGTACCGTCGATGGAGCCGAGACATTTGTCCT 235
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 227 TCTCTATTGCACTTCCAGTTCCCAGGAAAGTACCGTCGATGAAGGCGAGACATTTGTCCT 286
Query 236 CACCACTCCTCTTTATTACGTTAATGCCCCTCCTCACATGGGAAGTGCCTACACCACTAT 295
||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 287 CACCACTCCTCTTTATTACGTTAATGCCCCTCCCCACATGGGTAGTGCTTACACCACTAT 346
Query 296 CGCCGCCGATTCAATTGCTCGTTTCCAGAGGCTGCTTGGTAAGAAGGTTATCTTTATCAC 355
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 347 CGCCGCCGATTCAATTGCTCGTTTCCAGAGACTGCTTGGTAAGAAGGTTATCTTTATCAC 406
Query 356 AGGAACAGATGAACATGGTGAGAAGATAGCTACTTCAGCAGCTGCTAATGGACGCAATCC 415
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 407 AGGAACAGATGAACATGGTGAGAAGATAGCTACTTCAGCAGCTGCTAATGGACGTAATCC 466
Query 416 TGCTGAACATTGTGATCTCATTTCTCAATCTTATAGAACTCTTTGGAAAGATCTCGATAT 475
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 TCCTGAACATTGTGACCTCATTTCTCAATCTTATAGAACTCTTTGGAAAGATCTCGATAT 526
Query 476 AGCTTATGACAAATTCATTAGAACTACTGATCCTAAGCATGAAGCTATTGTAAAAGAGTT 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 AGCTTATGACAAATTCATTAGAACTACTGATCCTAAGCATGAAGCTATTGTAAAAGAGTT 586
Query 536 CTACGCTCGAGTTTTCGCAAACGGTGACATATACAGAGCTGATTATGAAGGTCTTTACTG 595
||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 587 CTACGCTCGTGTTTTCGCAAACGGTGATATTTACAGAGCTGATTATGAAGGTCTTTACTG 646
Query 596 TGTTAACTGCGAGGAATATAAGGATGAGAAAGAGCTGCTTGAAAACAATTGCTGCCCTGT 655
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 647 TGTTAACTGCGAGGAATATAAGGATGAGAAAGAGTTGCTTGAAAACAATTGTTGCCCTGT 706
Query 656 CCACCAAGCGCCATGTGTTGCAAGGAAAGAAGATAACTACTTCTTTGCTTTATCGAAGTA 715
||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 707 CCATCAAATGCCATGTGTTGCAAGGAAAGAAGATAACTACTTCTTTGCTTTGTCGAAATA 766
Query 716 TCAGAAACCACTTGAAGACATTTTGGCCCAGAATCCTCGTTTTGTGCAGCCTTCGTATCG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 TCAGAAACCACTTGAAGACATTTTGGCCCAGAATCCTCGTTTTGTGCAGCCTTCGTATCG 826
Query 776 TCTAAATGAGGTGCAAAGTTGGATAAAGAGTGGCTTAAGAGATTTTTCCATTTCTCGAGC 835
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 TCTTAATGAGGTACAAAGTTGGATAAAGAGTGGCTTAAGAGATTTTTCCATTTCTCGAGC 886
Query 836 ATTAGTAGATTGGGGAATTCCTGTTCCTGATGACAATAAGCAAACCATCTATGTTTGGTT 895
|||||| |||||||||||||||||||| || ||| ||||||||||||| |||||||||||
Sbjct 887 ATTAGTGGATTGGGGAATTCCTGTTCCCGACGACGATAAGCAAACCATATATGTTTGGTT 946
Query 896 TGATGCTCTACTGGGTTACATATCAGCTCTAACAGAGGACAACAAGCAACAAAATCTAGA 955
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 947 TGATGCTCTACTTGGTTACATATCAGCTCTAACAGAGGACAACAAACAACAAAATCTAGA 1006
Query 956 AACTGCTGTTTC-TTTGGGCTGGCCTGCTTCATTGCATTTGATTGGAAAGGATATCCTAC 1014
|||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1007 AACTGCTGTTTCATTTGG-CTGGCCTGCTTCATTGCATTTGATCGGAAAGGATATTCTAC 1065
Query 1015 GGTTTCATGCCGTCTACTGGCCTGCCATGCTAATGTCTGCTGGTCT-GAACCTTCCCAAG 1073
| ||||| || ||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1066 GATTTCACGCTGTCTACTGGCCTGCCATGCTAATGTCTGCTGGTCTTGAAC-TTCCCAAG 1124
Query 1074 ATGGTGTTTGGCCATGGGTTTCTGACAAAGGATGGGATGAAGATGGGAAAATCGTTGGGG 1133
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1125 ATGGTGTTTGGCCATGGGTTTCTGACAAAGGATGGAATGAAGATGGGAAAATCGTTGGGG 1184
Query 1134 AATACTCTAGAACCTTTTGAGTTGGTTAAGAAATTTGGGCCAGATGCGGTCAGGTACTTC 1193
|||||||||||||| |||||||||||| ||||||||||||||||||| || ||||| |||
Sbjct 1185 AATACTCTAGAACCGTTTGAGTTGGTTCAGAAATTTGGGCCAGATGCCGTGAGGTATTTC 1244
Query 1194 TTCCTTCGGGAGGTTGAATTTGGAAACGATGGGGACTATTCAGAAGACCGCTTTATAAAA 1253
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1245 TTCCTACGGGAGGTTGAATTTGGAAACGATGGGGACTATTCAGAAGACCGATTTATAAAA 1304
Query 1254 ATCGTCAATGCACATCTCGCCAACACTATAGGAAATCTTCTGAACCGTACTCTTGGTCTT 1313
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1305 ATCGTCAATGCACATCTCGCCAACACTATAGGAAATCTTCTTAACCGTACTCTTGGTCTT 1364
Query 1314 CTTAAGAAGAACTGTGAGTCCACTTTAGTGGTAGACTCGACTGTTGCAGCCGAAGGGGTT 1373
||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1365 CTTAAAAAGAACTGTGAATCCACTTTAGTGGTAGACTCGACAGTTGCAGCCGAAGGAGTT 1424
Query 1374 CCTTTGAAAGACACAGTGGAGAAGCTGGTTGAAAAGGCTCGGACAAACTATGAAAATCTG 1433
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1425 CCTTTGAAAGACACAGTGGAGAAGCTGGTTGAGAAGGCTAGGACAAACTATGAAAATCTG 1484
Query 1434 TCTCTATCATCGGCGTGTGAGGCTGTGTTAGAGATTGGAAATGCGGGAAATACCTACATG 1493
|| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1485 TCACTATCATCAGCGTGTGAAGCTGTTTTAGAGATTGGAAATGCGGGAAATACCTACATG 1544
Query 1494 GATCAACGAGCACCTTGGTTCCTGTTCAAACAAGGTGGTGTCTCAGCAGAAGAGGCAGCC 1553
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1545 GATCAACGAGCACCATGGTTTCTGTTCAAACAAGGTGGTGTCTCAGCAGAAGAGGCAGCC 1604
Query 1554 AAGGATCTGGTGATTATACTGGAAGTAATGAGAGTTATAGCGGTTGCGTTATCCCCCGTT 1613
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1605 AAGGATCTGGTGATTATACTGGAAGTAATGAGAGTCATAGCGGTTGCGTTATCCCCCGTT 1664
Query 1614 GCACCTTGCTTAAGTTTGAGGATATATTCACAGCTTGGCTATTCAGTTGATCAATTCAAT 1673
||||||||| ||||| ||||||| |||||||||||||||||| ||| ||||||||||||
Sbjct 1665 GCACCTTGCCTAAGTCTGAGGATCTATTCACAGCTTGGCTATACAGAGGATCAATTCAAT 1724
Query 1674 AGCATAACCTGGAGTGACACCAAATGGGGAGGGCTAAAGGGAGGACAAGTAATGGAGCAA 1733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 AGCATAACCTGGAGTGACACCAAATGGGGAGGGCTAAAGGGAGGACAAGTAATGGAGCAA 1784
Query 1734 GCGAGTCCTGTATTTGCAAGGATCGACCTGAATCCagagaaagaagaagaggagaagaag 1793
|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1785 GCGAGTCCCGTATTTGCAAGGATCGAGCTGAATCCAGAGAAAGAAGAAGATGAGAAGAAG 1844
Query 1794 ccaaaggttggtaagaaaaccggaaaagccaaggtgaaagTAGTAGAGCAAACTCCGACT 1853
|||||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct 1845 CCAAAGGTTGGTAAGAAAACTGGCAAAGCCAAGGTCAAAGTAGTAGAGCAAACTCCTACA 1904
Query 1854 GTAGCTGAAGCTTAAA-CCAACTCCACAAAATC 1885
|||||||||||||||| ||||||||||||||||
Sbjct 1905 GTAGCTGAAGCTTAAAACCAACTCCACAAAATC 1937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93473414790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5