BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938484
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55500.1 | Symbols: ATEXPA16, EXP16, ATEXP16, ATHEXP ALPHA 1... 1275 0.0
AT2G39700.1 | Symbols: ATEXPA4, ATEXP4, ATHEXP ALPHA 1.6, EXPA4... 638 0.0
> AT3G55500.1 | Symbols: ATEXPA16, EXP16, ATEXP16, ATHEXP ALPHA
1.7, EXPA16 | expansin A16 | chr3:20574831-20576182 REVERSE
LENGTH=1105
Length=1105
Score = 1275 bits (690), Expect = 0.0
Identities = 777/819 (95%), Gaps = 5/819 (1%)
Strand=Plus/Plus
Query 7 AAATA-TTCACCAAAATGGCAATCAATCAAATGATTCTCTTAACCATATTCCCACTCTTT 65
||||| || ||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 67 AAATACTT-ACCAAAATGGCAATCAATCCATTGATTCTCTTAACCATATTCCCACTCTTC 125
Query 66 CTCCTCTTGAGCTTCACCGACGCCGGAATCCCTGGCGTCTACTCAGGCGGCTCTTGGCAA 125
|| |||||||||||||||||||||||||||||| | |||| |||||| || |||||||||
Sbjct 126 CTTCTCTTGAGCTTCACCGACGCCGGAATCCCTAGAGTCTTCTCAGGTGGTTCTTGGCAA 185
Query 126 ACCGCTCACGCCACTTTCTATGGTGGCAACGATGCTTCCGGAACAATGGGTGGCGCGTGT 185
|||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 186 ACCGCTCACGCCACTTTCTACGGTGGAAACGATGCTTCGGGAACAATGGGTGGCGCGTGT 245
Query 186 GGATACGGGAATCTGTACAGTCAAGGATACGGAACAAACACGGCGGCCCTGAGCACAGCG 245
||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| ||
Sbjct 246 GGATACGGGAATCTGTATAGCCAAGGATACGGAACAAACACGGCGGCGCTGAGCACATCG 305
Query 246 TTGTTCAACAGTGGCCAAAGCTGCGGCGCATGCTTTGAAATCAAATGTGTTAATGATCCT 305
||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 306 TTGTTTAACAGTGGTCAAAGCTGCGGCGCATGCTTCGAAATCAAATGTGTCAATGATCCC 365
Query 306 AAATGGTGTCACCCGGGTAATCCTTCTGTCTTCGTAACCGCAACCAACTTTTGCCCTCCA 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 AAATGGTGTCACCCGGGTAATCCTTCTGTCTTCGTAACCGCAACCAACTTTTGCCCTCCA 425
Query 366 AACTTAGCCCAACCTAGCGACAATGGCGGATGGTGCAACCCGCCACGCTCTCATTTCGAC 425
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 426 AACTTAGCCCAGCCTAGCGACAATGGTGGCTGGTGCAACCCGCCACGCTCTCATTTCGAC 485
Query 426 CTCGCCATGCCCGTTTTCCTCAAGATCGCTGAGTATCGTGCCGGCATTGTTCCCATATCT 485
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 486 CTCGCCATGCCCGTTTTCCTCAAGATCGCTGAGTATCGTGCCGGCATTGTCCCCATCTCT 545
Query 486 TACCGCAGGGTGGCATGTAGGAAGAGTGGAGGGATAAGGTTCACGATCAACGGTCACCGT 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 TACCGCAGGGTGGCATGTAGGAAGAGTGGAGGGATAAGGTTCACGATCAACGGTCACCGT 605
Query 546 TACTTCAACTTGGTGCTGATAACGAATGTGGCCGGAGCAGGAGATATC-CTGAGGACGAG 604
|||||||||||||||||||| ||||| ||||||||||||||||| ||| | |||||||||
Sbjct 606 TACTTCAACTTGGTGCTGATTACGAACGTGGCCGGAGCAGGAGACATCGC-GAGGACGAG 664
Query 605 CGTGAAAGGTTCAAAGACTGGTTGGATGAGTTTAACTAGGAACTGGGGACAGAACTGGCA 664
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TGTGAAAGGTTCAAAGACTGGTTGGATGAGTTTAACTAGGAACTGGGGACAGAACTGGCA 724
Query 665 GTCTAATGCTGTTCTCGTTGGTCAGTCACTTTCCTTCCGTGTCACAGCCAGTGACCGTAG 724
|||||||||||||||||||||||||||||||||||||||||| ||| |||| || |||||
Sbjct 725 GTCTAATGCTGTTCTCGTTGGTCAGTCACTTTCCTTCCGTGTTACATCCAGCGATCGTAG 784
Query 725 AACCTCTACTTCATGGAACATCGCTCCTTCGAACTGGCAGTTTGGACAAACCTTTGTCGG 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 AACCTCTACTTCATGGAACATCGCTCCTTCGAACTGGCAGTTTGGACAAACCTTTGTCGG 844
Query 785 AAAGAATTTCAGGGTCTAAAGTGAAAATGAGGATATCGA 823
||||||||||||||||||||||||| ||| |||| |||
Sbjct 845 AAAGAATTTCAGGGTCTAAAGTGAAT-TGATGATACCGA 882
> AT2G39700.1 | Symbols: ATEXPA4, ATEXP4, ATHEXP ALPHA 1.6, EXPA4
| expansin A4 | chr2:16543832-16545584 REVERSE LENGTH=1338
Length=1338
Score = 638 bits (345), Expect = 0.0
Identities = 608/736 (83%), Gaps = 14/736 (2%)
Strand=Plus/Plus
Query 75 AGCTTCACCGACGCCGGAATCCCTGGCGTCTACTCAGGCGGCTCTTGGCAAACCGCTCAC 134
||| || ||||||| ||||||| || | ||||| |||||| | ||||||| ||| |||
Sbjct 196 AGCCTCGCCGACGCTAGAATCCCCGGTATTTACTCCGGCGGCGCATGGCAAAACGCACAC 255
Query 135 GCCACTTTCTATGGTGGCAACGATGCTTCCGGAACAATGGGTGGCGCGTGTGGATACGGG 194
|||||||| || ||||||| ||| || ||||| |||||||| || || ||||| |||||
Sbjct 256 GCCACTTTTTACGGTGGCAGCGACGCCTCCGGCACAATGGGAGGAGCTTGTGGTTACGGT 315
Query 195 AATCTGTACAGTCAAGGATACGGAACAAACACGGCGGCCCTGAGCACAGCGTTGTTCAAC 254
|| || ||||| ||||| ||||| || |||||||| || |||| || ||| |||| |||
Sbjct 316 AACCTATACAGCCAAGGGTACGGGACCAACACGGCTGCTTTGAGTACGGCGCTGTTTAAC 375
Query 255 AGTGGCCA-AAGCTGCGGCGCATGCTTTGAAATCAAATGTGTTAATGATCCTAAATGGTG 313
| ||| | || || || || |||||||| | ||||| | || || ||| |||||||
Sbjct 376 AATGG-TATGAGTTGTGGAGCCTGCTTTGAGCTAAAATGCGCCAACGACCCTCAATGGTG 434
Query 314 TCACCCGGGTAATCCTTCTG-TCTTCGTAACCGCAACCAACTTT-TGCCCTCCAAACTTA 371
|||| | |||| |||||| | || || | ||||||||||| ||| ||||| ||||||||
Sbjct 435 TCACTCAGGTAGTCCTTC-GATCCTCATCACCGCAACCAA-TTTCTGCCCACCAAACTTG 492
Query 372 GCCCAACCTAGCGACAATGGCGGATGGTGCAACCCGCCACGCT-CTCA-TTTCGACCTCG 429
|| || ||||||||||| || |||||||||||||| ||||| | || ||| ||||| |
Sbjct 493 GCTCAGCCTAGCGACAACGGAGGATGGTGCAACCCACCACG-TGAACACTTT-GACCTAG 550
Query 430 CCATGCCCGTTTTCCTCAAGATCGCTGAGTATCGTGCCGGCATTGTTCCCATATCTTACC 489
||||||| || ||||| ||||||||| | ||||| ||||||||||| ||| | || ||||
Sbjct 551 CCATGCCTGTCTTCCTTAAGATCGCTCAATATCGCGCCGGCATTGTCCCCGTCTCATACC 610
Query 490 GCAGGGTGGCATGTAGGAAGAGTGGAGGGATAAGGTTCACGATCAACGGTCACCGTTACT 549
|||||||| ||||||| ||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 611 GCAGGGTGCCATGTAGAAAGAGAGGAGGCATAAGGTTCACAATCAACGGTCACCGTTACT 670
Query 550 TCAACTTGGTGCTGATAACGAATGTGGCCGGAGCAGGAGATATCCTGAGGACGAGCGTGA 609
|||||||||| ||||| || || ||||| ||||||||||| ||| ||||| | || ||||
Sbjct 671 TCAACTTGGTTCTGATCACTAACGTGGCTGGAGCAGGAGACATCGTGAGGGCTAGTGTGA 730
Query 610 AAGGTTCAAAGACTGGTTGGATGAGTTTAA-CTAGGAACTGGGGACAGAACTGGCAGTCT 668
|||| ||| |||||||||||||||||| | | || ||||||||||| |||||||| |||
Sbjct 731 AAGGATCACGGACTGGTTGGATGAGTTTGAGC-AGAAACTGGGGACAAAACTGGCAATCT 789
Query 669 AATGCTGTTCTCGTTGGTCA-GTCACTTTCCTTCCGTGTCACAGCCAGTGACCGTAGAAC 727
||||||||| | |||||||| | |||| || ||||||||||||| |||||||||||||||
Sbjct 790 AATGCTGTTTTGGTTGGTCAAG-CACTCTCTTTCCGTGTCACAGGCAGTGACCGTAGAAC 848
Query 728 CTCTACTTCATGGAACATCGCTCCTTCGAACTGGCAGTTTGGACAAACCTTTGTCGGAAA 787
|||||||| |||||||| | |||||| |||||||||||||| |||||||||||||| ||
Sbjct 849 ATCTACTTCCTGGAACATGGTTCCTTCTAACTGGCAGTTTGGTCAAACCTTTGTCGGGAA 908
Query 788 GAATTTCAGGGTCTAA 803
|||||||||||| |||
Sbjct 909 GAATTTCAGGGTTTAA 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40086849306
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5