BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938486
Length=284
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55515.1 | Symbols: DVL8, RTFL7 | ROTUNDIFOLIA like 7 | chr3... 291 3e-78
> AT3G55515.1 | Symbols: DVL8, RTFL7 | ROTUNDIFOLIA like 7 | chr3:20590923-20591162
FORWARD LENGTH=240
Length=240
Score = 291 bits (157), Expect = 3e-78
Identities = 217/245 (89%), Gaps = 7/245 (3%)
Strand=Plus/Plus
Query 21 ATGTCTCGACCGAGAAGCTCGCCGCAGTTTCAGTACCTACCGAAAAAGGAAAGGT-TCGG 79
|||||||||| ||||| |||| | ||||| ||| ||| |||||||||||| || | ||
Sbjct 1 ATGTCTCGACTGAGAAACTCGGCACAGTTGCAG---CTATCGAAAAAGGAAA-GTCTTGG 56
Query 80 AGACGACGGAGGCGCGTCGAGGAACACGC-TCTCGTCGAGACAGAAACAGGGGAAGTACG 138
|||| |||||||||||| || | ||||| | || || ||||||||||||||||| ||||
Sbjct 57 AGACAACGGAGGCGCGTTGAACACCACGCGT-TCCTCTAGACAGAAACAGGGGAAATACG 115
Query 139 GTTTCACGAGGAAATGTGGGAGATTGGTGAAGGAACAAAGAGCTCGCTTCTACATCATGA 198
||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 116 GTTTCACGAGGAAGTGTGGGAGATTGGTGAAAGAACAAAGAGCTCGCTTTTACATCATGA 175
Query 199 GGAGATGCGTCGTTATGCTTATTTGCTGGACTGATCATAATAATAACAACTCCGAGGACT 258
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 176 GGAGATGCGTCGTTATGCTTATTTGCTGGACTGATCATAATAATAACAACTCTGACCACT 235
Query 259 CCTAA 263
|||||
Sbjct 236 CCTAA 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13069614740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5