BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938492
Length=2096
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55550.1 | Symbols: | Concanavalin A-like lectin protein ki... 3181 0.0
> AT3G55550.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr3:20600019-20602087 REVERSE LENGTH=2069
Length=2069
Score = 3181 bits (1722), Expect = 0.0
Identities = 1957/2072 (94%), Gaps = 9/2072 (0%)
Strand=Plus/Plus
Query 11 GAAAACAATTCTTGATGGCCCAGACCTTTGTTTTCATC-TGCTTACTACTCATCTTCTTG 69
||||||||||||||||| | || ||||||| | ||||| || |||||||||||||||||
Sbjct 1 GAAAACAATTCTTGATGTCTCAAACCTTTGCTGTCATCTTG-TTACTACTCATCTTCTTA 59
Query 70 ACACACTTAGTTTCATCTCTAACTCATGACTTCTCCTTCGTTGGCTTCAAAAAAGCCTCA 129
|||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||
Sbjct 60 ACACACTTAGTTTCATCTCTAATTCAAGACTTCTCCTTCATTGGCTTCAAAAAAGCCTCA 119
Query 130 CCAAATCTTATC-ATAACCGGAGTTGCAGAGATTGCTGCCACTGGAGCCATCAGGCTCAC 188
|||||| ||| | ||| ||||||||||||||| || |||||||||| |||||||||||
Sbjct 120 CCAAAT-TTAACGTTAAACGGAGTTGCAGAGATCGCCCCCACTGGAGCAATCAGGCTCAC 178
Query 189 AACAGACACACAGCGCGTGATCGGTCATGCTTTCTACTCCTTACCAATCCGGTTCAAGCC 248
|||||| |||||||||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 179 AACAGAGACACAGCGCGTGATTGGTCACGCTTTCTACTCCTTACCAATACGGTTCAAGCC 238
Query 249 AATCGGTGTAAACCGAGCTCTGTCTTTCTCCACGTCCTTTGCAATCGCCATGGTTCCAGA 308
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 239 AATCGGTGTAAACCGAGCTCTGTCTTTCTCCACGTCTTTTGCAATCGCCATGGTTCCAGA 298
Query 309 GTTTGTTACTCTTGGAGGCCATGGACTTGCCTTTGCAATCACTCCAACTCCAGATCTCAG 368
||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 299 GTTTGTTACTCTTGGTGGCCACGGACTTGCCTTCGCCATCACTCCAACTCCAGATCTCAG 358
Query 369 AGGCTCTCTTCCAAGCCAGTACTTAGGCCTTTTGAATTCCAGCAGAGTTAACTTCTCGAG 428
||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 359 AGGTTCTCTTCCTAGCCAGTACTTAGGCCTGTTGAATTCAAGCAGAGTTAACTTCTCTAG 418
Query 429 TCACTTCTTCGCTGTGGAATTCGACACTGTCAGGGATTTGGAGTTTGAGGACATCAATGA 488
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 419 CCACTTCTTCGCTGTGGAATTCGATACTGTCAGGGATTTGGAGTTTGAGGACATTAATGA 478
Query 489 TAACCATGTAGGAATCGATATAAACAGTATGGAATCGAGTACTTCGACTCCCGCTGGCTA 548
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 479 TAACCATGTAGGAATCGATATAAACAGTATGGAATCGAGTATTTCGACTCCTGCTGGCTA 538
Query 549 TTTCCTCGCTAATTCAACCAAAAAAGAGCTTCTCCTTGACGGTGGTAGAGTGATTCAAGC 608
|||||||||||| ||||||||||| |||||| ||||||| ||||||||||||||||||||
Sbjct 539 TTTCCTCGCTAACTCAACCAAAAAGGAGCTTTTCCTTGATGGTGGTAGAGTGATTCAAGC 598
Query 609 TTGGATTGATTATGATGCAAACAAGAAAAGGTTAGATGTTAAGCTTTCTCCATTCTCAGA 668
|||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 599 TTGGATTGATTACGATTCAAACAAGAAAAGGTTAGATGTTAAACTTTCTCCATTCTCAGA 658
Query 669 GAAACCAAAGTTGTCTCTTCTCTCTTACGATGTTGATCTGTCCTCTGTTTTGGGAGATGA 728
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 659 GAAACCAAAGTTGTCTCTTCTCTCTTACGATGTTGACCTATCCTCTGTTTTGGGAGATGA 718
Query 729 AATGTATGTTGGATTCTCTGCTTCGACCGGTTTGCTAGCTAGTTCACATTACATCTTAGG 788
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 719 AATGTATGTTGGATTCTCTGCTTCCACCGGTTTGCTAGCTAGTTCACATTACATCTTAGG 778
Query 789 TTGGAACTTTAACATGAGTGGAGAAGCATTTTCTCTGTCTTTGCCATCTCTCCCTCGGAT 848
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 779 TTGGAACTTTAACATGAGTGGAGAAGCATTTTCTCTGTCTTTGCCATCTCTTCCTCGGAT 838
Query 849 CCCTGGTTCAATCaagaagaagaagaagaagagaCAGGGTTTGATTCTCGGAGTATCAAT 908
||| ||||||||||||||| |||||||||||||||| |||||||||| |||||||| |
Sbjct 839 TCCTAGTTCAATCAAGAAGAGGAAGAAGAAGAGACAGAGTTTGATTCTTGGAGTATCTCT 898
Query 909 CTTGTGTTCCCTTTTGATCTTCGCGGTTCTTGTCGCTGCATTGTTGTTCGTAGTAAAAAA 968
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||
Sbjct 899 CTTGTGTTCCCTTTTGATCTTCGCGGTTCTTGTCGCTGCATCGTTGTTCGTGGTAAGAAA 958
Query 969 GGCGAAAGATGAAGACAGAGTTGAAGAATGGGAGCTTGATTTTGGCCCGCATAGATTTTC 1028
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 959 GGTGAAAGATGAAGACAGAGTTGAAGAATGGGAGCTTGATTTTGGTCCGCATAGATTTTC 1018
Query 1029 TTACAGAGAGCTCAAGAAAGCTACGAATGGTTTTGGGGACAAGGAGCTTCTCGGGTCTGG 1088
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1019 TTACAGAGAGCTCAAGAAAGCTACTAATGGTTTTGGGGACAAAGAGCTTCTCGGGTCTGG 1078
Query 1089 CGGGTTTGGTAAAGTATACAAAGGAAAGCTCGCAGGTTCAGACGAATTTGTAGCCGTCAA 1148
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1079 CGGGTTTGGTAAAGTATACAAAGGAAAGCTCCCGGGTTCAGACGAATTTGTAGCCGTCAA 1138
Query 1149 GAGAATATCTCACGAGTCAAGACAAGGTGTACGAGAATTCATGTCTGAGGTCTCCACCAT 1208
|||||| ||||| |||||||||||||||||||||||||| |||||||||||||| | |||
Sbjct 1139 GAGAATCTCTCATGAGTCAAGACAAGGTGTACGAGAATTTATGTCTGAGGTCTCAAGCAT 1198
Query 1209 TGGCCATCTCCGGCATAGGAATCTTGTTCAGTTGCTTGGTTGGTGTCGACAG-CGAGATG 1267
||| || ||||||||||||||||||||||||||||| |||||||||||| || || ||||
Sbjct 1199 TGGTCACCTCCGGCATAGGAATCTTGTTCAGTTGCTCGGTTGGTGTCGA-AGGCGGGATG 1257
Query 1268 ATTTGCTTCTCGTCTATGATTTCATGCCTAATGGAAGCTTAGACATGTACTTGTTCGACG 1327
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 ATTTGCTTCTTGTCTATGATTTCATGCCTAATGGAAGCTTAGACATGTACTTGTTCGACG 1317
Query 1328 AAAACCCTAAAGTTATATTGACTTGGAAGCAAAGATTCAAAATCTTAAAAGGGGTTGCGT 1387
|||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1318 AAAACCCTGAAGTTATCTTGACTTGGAAGCAAAGATTCAAAATCATAAAAGGGGTTGCTT 1377
Query 1388 CCGGTTTACTCTACCTACACGAAGGATGGGAACAAACGGTTATTCACCGCGATATTAAAG 1447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CCGGTTTACTCTACCTACACGAAGGATGGGAACAAACGGTTATTCACCGCGATATTAAAG 1437
Query 1448 CTGCAAATGTTCTGTTGGACAGCGAAATGAACGGGCGGGTGGGAGATTTCGGTCTTGCTA 1507
||||||| ||| |||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1438 CTGCAAACGTTTTGTTGGACAGCGAAATGAACGGACGGGTAGGAGATTTCGGTCTTGCTA 1497
Query 1508 AGTTATATGAACATGGATCGGACCCGGGGGCTACAAGAGTGGTTGGCACATTTGGGTACC 1567
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1498 AGTTATATGAGCATGGATCGGATCCGGGGGCTACAAGAGTGGTTGGCACATTTGGGTACT 1557
Query 1568 TAGCACCAGAACTCACAAAATCCGGAAAATTGACAACAAGCACCGATGTTTATGCGTTTG 1627
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1558 TAGCACCAGAACTCACAAAATCCGGAAAACTGACAACAAGCACCGATGTTTATGCGTTTG 1617
Query 1628 GAGCGGTTTTATTGGAAGTAGCTTGCGGAAGAAGACCAATCGAAACAACTGCATTACCAG 1687
||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||
Sbjct 1618 GAGCGGTTTTATTGGAAGTAGCTTGCGGAAGAAGACCTATCGAAACAAGTGCGTTACCAG 1677
Query 1688 AGGAGCTTGTAATGGTTGATTGGGTTTGGTCAAGGTGGCAAAGTGGAGACATTAGAGATG 1747
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1678 AGGAGCTTGTAATGGTTGATTGGGTTTGGTCAAGGTGGCAAAGCGGAGACATTAGAGATG 1737
Query 1748 TTGTGGACAGGAGATTGAACGGTGAGTTTGATGAAGAGGAAGTGGTTATGGTGATAAAAT 1807
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1738 TTGTGGACAGGAGATTGAACGGTGAGTTTGACGAAGAGGAAGTGGTTATGGTGATCAAAT 1797
Query 1808 TAGGGCTTCTCTGCTCAAACAATTCGCCAGAGGTTCGACCTACAATGAGACAAGTGGTTA 1867
|||||||||| |||||||| ||||| || |||||||||||||||||||||||||| ||||
Sbjct 1798 TAGGGCTTCTATGCTCAAATAATTCACCCGAGGTTCGACCTACAATGAGACAAGTAGTTA 1857
Query 1868 TGTATCTCGAAAAGCAGTTTCCCTCGCCTGAAGTTGTTCCTGCACCGGATTTTTTAGATG 1927
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1858 TGTATCTCGAAAAGCAGTTTCCGTCGCCTGAAGTTGTTCCTGCACCGGATTTTCTAGATG 1917
Query 1928 CAAATG---GTATGTGTTTTGATGAGCGCAGCGGTAATGCAGGCGAGTTCGAGGATTTTG 1984
|||||| |||||||| |||||||||||||||||| |||||||||||| || |||||||
Sbjct 1918 CAAATGATAGTATGTGTCTTGATGAGCGCAGCGGTAGTGCAGGCGAGTTTGAAGATTTTG 1977
Query 1985 TGGATTCAGCTAGGTTTTACAGCGGACCAAATGAAACTACTACTTCGTCGGTATTCTCTT 2044
||||||||||||||||||| |||||||| ||||||||||||||||||||| |||| || |
Sbjct 1978 TGGATTCAGCTAGGTTTTATAGCGGACCGAATGAAACTACTACTTCGTCGATATTTTCCT 2037
Query 2045 TCTCCGGTAAAACAAGAACTGATCCAAGATAA 2076
||||||||||||||||||||||||||||||||
Sbjct 2038 TCTCCGGTAAAACAAGAACTGATCCAAGATAA 2069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103915128150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5