BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938496
Length=461
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55570.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 520 6e-147
AT3G55573.1 | Symbols: | unknown protein; Has 30201 Blast hits... 128 4e-29
> AT3G55570.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G41761.1);
Has 128 Blast hits to 128 proteins in 12 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20610166-20610671
REVERSE LENGTH=330
Length=330
Score = 520 bits (281), Expect = 6e-147
Identities = 303/314 (96%), Gaps = 0/314 (0%)
Strand=Plus/Plus
Query 127 ATGTTCATGCGTTTAACAAAGGCAATGAAGAAGTATATATGGATGTCCAAAATGGCAAGA 186
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 17 ATGTTCATGCGTTTAACAAAGGCAATGAAGAAGTATATATGGATGTTGAAAATGGCAAGA 76
Query 187 ACGGTGAAGCGAGTGTGTTTCGAATGCCTCTTCATTACCCAAGATACTCTAAAAAAGATT 246
||||||||| |||||||||||| |||||||||||||||||||||||||| ||| ||||||
Sbjct 77 ACGGTGAAGGGAGTGTGTTTCGCATGCCTCTTCATTACCCAAGATACTCCAAAGAAGATT 136
Query 247 ACCAAGACATGCCAGAGTGGAAGCTCGACAGGGTTTTAGCAGATTACGGTTTGTCTACTT 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 ACCAAGACATGCCAGAGTGGAAGCTCGACAGGGTTTTAGCAGATTACGGTTTGTCTACTT 196
Query 307 ATGGTGACTTGGCTCACAAGCGAGACTTTGCTATTGGAGCTTTTCTCTGGATTTCAACTC 366
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 197 ATGGTGACTTGGCTCATAAGCGTGACTTTGCTATTGGAGCTTTTCTCTGGATTTCAACTC 256
Query 367 GTAATCCAAAGCTTTATCAAGACAAGTCCATCAACTCCAAACCGACGAAAGATACAAAAT 426
|||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||
Sbjct 257 GTAATCCAAAGCTTTATCAAGAAAAGTCCATCAACTCCAAACTGAAGAAAGATACAAAAT 316
Query 427 CAGCTCATGCATAA 440
||||||||||||||
Sbjct 317 CAGCTCATGCATAA 330
> AT3G55573.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:20611297-20611428
REVERSE LENGTH=132
Length=132
Score = 128 bits (69), Expect = 4e-29
Identities = 73/75 (97%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 1 GTGTGGTCTTGGTCCTTCATATGTCGGCTAAATTAGCCAGTGGGGTTCGTTTAATGACTG 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 50 GTGTGGTTTTGGTCCTTCATATGTCGGCTAAATTAGCCAGTGGGGTTCGTTTAATGATTG 109
Query 61 TGATGACACGTCGCA 75
|||||||||||||||
Sbjct 110 TGATGACACGTCGCA 124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21967006313
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5