BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg938496 Length=461 Score E Sequences producing significant alignments: (Bits) Value AT3G55570.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 520 6e-147 AT3G55573.1 | Symbols: | unknown protein; Has 30201 Blast hits... 128 4e-29 > AT3G55570.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20610166-20610671 REVERSE LENGTH=330 Length=330 Score = 520 bits (281), Expect = 6e-147 Identities = 303/314 (96%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 127 ATGTTCATGCGTTTAACAAAGGCAATGAAGAAGTATATATGGATGTCCAAAATGGCAAGA 186 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 17 ATGTTCATGCGTTTAACAAAGGCAATGAAGAAGTATATATGGATGTTGAAAATGGCAAGA 76 Query 187 ACGGTGAAGCGAGTGTGTTTCGAATGCCTCTTCATTACCCAAGATACTCTAAAAAAGATT 246 ||||||||| |||||||||||| |||||||||||||||||||||||||| ||| |||||| Sbjct 77 ACGGTGAAGGGAGTGTGTTTCGCATGCCTCTTCATTACCCAAGATACTCCAAAGAAGATT 136 Query 247 ACCAAGACATGCCAGAGTGGAAGCTCGACAGGGTTTTAGCAGATTACGGTTTGTCTACTT 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 137 ACCAAGACATGCCAGAGTGGAAGCTCGACAGGGTTTTAGCAGATTACGGTTTGTCTACTT 196 Query 307 ATGGTGACTTGGCTCACAAGCGAGACTTTGCTATTGGAGCTTTTCTCTGGATTTCAACTC 366 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 197 ATGGTGACTTGGCTCATAAGCGTGACTTTGCTATTGGAGCTTTTCTCTGGATTTCAACTC 256 Query 367 GTAATCCAAAGCTTTATCAAGACAAGTCCATCAACTCCAAACCGACGAAAGATACAAAAT 426 |||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||| Sbjct 257 GTAATCCAAAGCTTTATCAAGAAAAGTCCATCAACTCCAAACTGAAGAAAGATACAAAAT 316 Query 427 CAGCTCATGCATAA 440 |||||||||||||| Sbjct 317 CAGCTCATGCATAA 330 > AT3G55573.1 | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:20611297-20611428 REVERSE LENGTH=132 Length=132 Score = 128 bits (69), Expect = 4e-29 Identities = 73/75 (97%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 1 GTGTGGTCTTGGTCCTTCATATGTCGGCTAAATTAGCCAGTGGGGTTCGTTTAATGACTG 60 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 50 GTGTGGTTTTGGTCCTTCATATGTCGGCTAAATTAGCCAGTGGGGTTCGTTTAATGATTG 109 Query 61 TGATGACACGTCGCA 75 ||||||||||||||| Sbjct 110 TGATGACACGTCGCA 124 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21967006313 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5