BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938499
Length=358
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55590.1 | Symbols: | Glucose-1-phosphate adenylyltransfera... 472 1e-132
AT2G39770.1 | Symbols: CYT1, VTC1, SOZ1, EMB101, GMP1 | Glucose... 261 3e-69
> AT3G55590.1 | Symbols: | Glucose-1-phosphate adenylyltransferase
family protein | chr3:20617049-20618881 FORWARD LENGTH=1162
Length=1162
Score = 472 bits (255), Expect = 1e-132
Identities = 311/337 (92%), Gaps = 8/337 (2%)
Strand=Plus/Plus
Query 1 GAAGTTTGTGGTGCATCAAGATGAAAGCTCTTATTCTAGTTGGAGGTTTTGGCACTCGCT 60
|||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 48 GAAGTTAGTAGTGCATCAAGATGAAAGCTCTTATTCTTGTTGGAGGTTTTGGCACTCGCT 107
Query 61 TGAGACCATTGACTCTCAGTTTCCCAAAGCCGCTTGTTGATTTCGCTAATAAACCTATAT 120
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 108 TGAGACCATTGACTCTCAGTCTCCCAAAGCCGCTTGTCGATTTCGCTAATAAACCTATG- 166
Query 121 ATGATCCTACATCAGA--G-G-CACTTAAGGCAATTGGAGTCGATGAAGTTGTTTTGGCC 176
|| || ||||||||| | | |||| |||||||||||||| |||||||| || ||||||
Sbjct 167 AT--TC-TACATCAGATAGAGGCACTAAAGGCAATTGGAGTGGATGAAGTCGTCTTGGCC 223
Query 177 ATTAACTATGAGCCAGAGCAACTGCTAGTGATGTCGAAATTCTCAAAGGACGTTGAGACA 236
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| ||
Sbjct 224 ATTAACTACGAGCCAGAGCAACTGCTAGTGATGTCCAAATTCTCAAACGACGTTGAGGCA 283
Query 237 AATCTCGGGATAAAGATCACCTGCTCACAAGAGACAGAGCCTTTAGGTACAGCTGGTCCT 296
| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 284 ACTCTCGGGATCAAGATCACCTGCTCACAAGAGACTGAGCCTTTAGGTACAGCTGGTCCT 343
Query 297 TTGGCTTTAGCGAGGGACAAACTGGTTGATGGCTCTG 333
||||||||||| |||||||||||||||||||||||||
Sbjct 344 TTGGCTTTAGCCAGGGACAAACTGGTTGATGGCTCTG 380
> AT2G39770.1 | Symbols: CYT1, VTC1, SOZ1, EMB101, GMP1 | Glucose-1-phosphate
adenylyltransferase family protein | chr2:16588702-16590985
FORWARD LENGTH=1491
Length=1491
Score = 261 bits (141), Expect = 3e-69
Identities = 268/326 (82%), Gaps = 21/326 (6%)
Strand=Plus/Plus
Query 14 CATCAAGATGAAAGCTCTTATTCTAGTTGGAGGTTTTGGCACTCGCTTGAGACCATTGAC 73
|||||||||||| || || ||||| |||||||| || |||||||||||||||||||||||
Sbjct 155 CATCAAGATGAAGGCACTCATTCTTGTTGGAGGCTTCGGCACTCGCTTGAGACCATTGAC 214
Query 74 TCTCAGTTTCCCAAAGCCGCTTGTTGATTTCGCTAATAAACCTATATATGATCCTACATC 133
|||||||||||||||||| ||||||||||| ||||||||||| || |||||| ||||
Sbjct 215 TCTCAGTTTCCCAAAGCCCCTTGTTGATTTTGCTAATAAACCCAT----GATCCTTCATC 270
Query 134 AGA--G-G-CACTTAAGGCAATTGGAGTCGATGAAGTTGTTTTGGCCATTAACTATGAGC 189
||| | | | ||||||||| ||||||| |||||||| ||||||||||| || ||| |||
Sbjct 271 AGATAGAGGCTCTTAAGGCAGTTGGAGTTGATGAAGTGGTTTTGGCCATCAATTATCAGC 330
Query 190 CAGAGCAACTGCTAGTGATGTCGAAATTCTCAAAGGACGTTGAGACAAATCTCGGGA-T- 247
||||| || | || || || |||| |||||| ||||||| || || || | |
Sbjct 331 CAGAGG---TG--A-TGCTG---AACTTCTTGAAGGACTTTGAGACCAAGCT-GGAAATC 380
Query 248 AAAGATCACCTGCTCACAAGAGACAGAGCCTTTAGGTACAGCTGGTCCTTTGGCTTTAGC 307
||| ||||| |||||||||||||| ||||| ||||||| ||||||||| ||||| ||||
Sbjct 381 AAA-ATCACTTGCTCACAAGAGACCGAGCCACTAGGTACCGCTGGTCCTCTGGCTCTAGC 439
Query 308 GAGGGACAAACTGGTTGATGGCTCTG 333
||| |||||| || ||||||| ||||
Sbjct 440 GAGAGACAAATTGCTTGATGGATCTG 465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16789428166
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5