BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938504
Length=782
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55620.1 | Symbols: emb1624 | Translation initiation factor ... 1306 0.0
> AT3G55620.1 | Symbols: emb1624 | Translation initiation factor
IF6 | chr3:20634202-20636506 FORWARD LENGTH=1088
Length=1088
Score = 1306 bits (707), Expect = 0.0
Identities = 757/782 (97%), Gaps = 0/782 (0%)
Strand=Plus/Plus
Query 1 GTGTACGTTAGCCTCCTCTCTCTAATGGCGACTCGTCTTCAGTTTGAGAACAACTGTGAA 60
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 133 GTGTACGTTAGCCTCCTCCCTCTAATGGCGACTCGTCTTCAGTTTGAGAACAACTGCGAA 192
Query 61 GTTGGTGTCTTTTCCAAACTCACTAATGCCTATTGCTTAGTCGCTATAGGAGGCTCTGAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 GTTGGTGTCTTTTCCAAACTCACTAATGCCTATTGCTTAGTCGCTATAGGAGGCTCTGAG 252
Query 121 AACTTTTACAGTGCTTTTGAGTCGGAGTTGGCAGATGTTATCCCTATCGTTAAGACCTCT 180
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 253 AACTTTTACAGTGCTTTTGAGTCGGAGTTAGCAGATGTTATCCCTATTGTTAAGACCTCT 312
Query 181 ATTGGAGGAACACGAATTATTGGGCGTCTTTGTGCTGGAAACAAGAATGGGCTTCTTGTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 ATTGGAGGAACACGAATTATTGGGCGTCTTTGTGCTGGAAACAAGAATGGGCTTCTTGTA 372
Query 241 CCTCATACAACTACTGATCAAGAGCTTCAACACTTGAGGAACAGTCTACCTGATCAAGTT 300
||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 373 CCTCATACAACAACTGACCAAGAGCTTCAACACTTAAGGAACAGTCTACCTGATCAAGTT 432
Query 301 GTGGTCCAGCGAATTGATGAACGTCTGTCTGCTCTTGGAAATTGCATTGCCTGCAATGAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 GTGGTCCAGCGAATTGATGAACGTCTGTCTGCTCTTGGAAATTGCATTGCCTGCAATGAC 492
Query 361 CATGTCGCTCTTGCCCACACTGATCTTGATAAGGAAACCGAGGAAATAATAGCGGATGTT 420
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 493 TATGTAGCTCTTGCCCACACCGATCTTGATAAGGAAACCGAGGAAATAATAGCGGATGTA 552
Query 421 CTTGGCGTTGAAGTTTTCCGTCAGACAATTGCGGGCAACATTCTCGTGGGCAGTTACTGT 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 553 CTTGGCGTTGAAGTTTTCCGTCAGACAATTGCAGGCAACATTCTCGTGGGCAGTTACTGT 612
Query 481 GCCCTATCAAACAGAGGTGGAATGGTCCATCCTCACACCTCCGTGGAAGACTTGGATGAA 540
|||||||| |||| ||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 613 GCCCTATCCAACAAAGGTGGAATGGTCCATCCTCACACCTCAGTGGAAGACTTGGAAGAA 672
Query 541 CTCTCAACACTTCTTCAGGTCCCTCTTGTTGCAGGAACCGTAAACCGTGGTAGTGAAGTT 600
||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 673 CTCTCAACACTTCTTCAAGTCCCTCTCGTTGCAGGAACCGTGAACCGTGGTAGTGAAGTT 732
Query 601 ATAGCTGCGGGTATGACTGTTAATGATTGGACCTCTTTCTGCGGTTCAGACACAACCGCG 660
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 733 ATCGCTGCGGGTATGACCGTTAATGATTGGACCTCTTTCTGCGGTTCAGACACAACTGCG 792
Query 661 ACAGAGCTCTCTGTTATAGACAGCATCTTCAAGCTAAGGGAAGCCCAGCCCAGCTCTATC 720
|| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 793 ACTGAGCTCTCTGTCATAGACAGCATCTTCAAGCTAAGGGAAGCCCAACCCAGCTCTATC 852
Query 721 GTCGATGAGATGAGGAAGTCATTGATCGATACCTATGTTTAAATTTTGTTTGTTTGGATG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 GTCGATGAGATGAGGAAGTCATTGATCGATACCTATGTTTAAATTTTGTTTGTTTGGATG 912
Query 781 AC 782
||
Sbjct 913 AC 914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38027249279
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5