BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938506
Length=1040
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55640.1 | Symbols: | Mitochondrial substrate carrier famil... 1688 0.0
> AT3G55640.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr3:20639833-20642659 FORWARD LENGTH=1462
Length=1462
Score = 1688 bits (914), Expect = 0.0
Identities = 999/1041 (96%), Gaps = 1/1041 (0%)
Strand=Plus/Plus
Query 1 TTTGGATTTTTGGGCGGC-AAAATGGTGATGCAGACGGAGGCTAGGGTTGGTGTGAGCTC 59
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 194 TTTGGATTTTTGGGCGGCAAAAATGGTGATGCAGACGGAAGCTAGGGTTGGTGTGAGCTC 253
Query 60 AGGGCATGACGTAGCTTCGTCTTCTCATCGTTTAACGCAGGACCAGAGATCACATATCGA 119
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 AGGACATGGCGTAGCTTCGTCTTCTCATCGTTTAACGCAGGACCAGAGATCACATATCGA 313
Query 120 ATCGGCTTCTCAGCTCTTAGCCGGAGGACTCGCCGGTGCTTTCAGCAAGACTTGCACTGC 179
|||||| || ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 314 ATCGGCGTCGCAGCTCTTAGCCGGAGGACTCGCTGGTGCTTTTAGCAAGACTTGTACTGC 373
Query 180 TCCTCTCTCTCGTCTCACCATTCTCTTCCAGGTGCAAGGTATGCACACAAATGCTGAAGC 239
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 374 TCCTCTATCTCGTCTCACCATTCTCTTCCAGGTGCAAGGTATGCACACAAATGCTGCAGC 433
Query 240 TCTAAGAAAGCCAAGCATATTACACGAGGCGTCACGGATATTGAATGAAGAAGGATTGAA 299
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 434 TTTAAGAAAGCCAAGCATATTACACGAGGCTTCACGGATATTGAATGAAGAAGGATTGAA 493
Query 300 GGCTTTTTGGAAAGGGAATCTAGTTACTATTGCTCACCGGCTTCCATATTCTTCTGTCAA 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 494 AGCTTTTTGGAAAGGGAATCTAGTTACTATTGCTCACCGGCTTCCATATTCTTCTGTTAA 553
Query 360 TTTCTGCGCATATGAACACTACAAGAAGTTCATGTATATGGTTACTGGGATGGAAAATCA 419
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 TTTCTACGCATATGAACACTACAAGAAGTTCATGTATATGGTTACTGGGATGGAAAATCA 613
Query 420 CAAGGCGAGTATAAGCTCAAACGTTTTTGTACATTTTGTAGCCGGTGGTTTGGCTGGAAT 479
||||| | ||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 614 CAAGGAGGGTATAAGTTCAAACCTTTTTGTACATTTTGTAGCCGGTGGTTTGGCTGGAAT 673
Query 480 CACAGCTGCTTCTGCCACTTATCCGCTTGATCTTGTTAGAACTCGTCTTGCTGCTCAGAC 539
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 674 CACAGCTGCTTCTGCCACTTATCCACTTGATCTTGTTAGAACTCGTCTTGCTGCTCAGAC 733
Query 540 AAAAGTAATCTACTACACGGGTATCTGGCATACTCTGCGCACTATTACTAGAGATGAAGG 599
|||||||||||||||| ||||||||||||||||||||||| ||||||| | ||||||||
Sbjct 734 AAAAGTAATCTACTACTCGGGTATCTGGCATACTCTGCGCTCTATTACAACCGATGAAGG 793
Query 600 TATCTTGGGCCTCTACAAGGGACTAGGAACAACGCTTGTGGGTGTTGGGCCTAGTATTGC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 TATCTTGGGCCTCTACAAGGGACTAGGAACAACGCTTGTGGGTGTTGGGCCTAGTATTGC 853
Query 660 CATTAGCTTTTCTGTGTATGAATCATTGAGATCTTATTGGAGGTCAACTAGGCCCCATGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 CATTAGCTTTTCTGTGTATGAATCATTGAGATCTTATTGGAGGTCAACTAGGCCCCATGA 913
Query 720 TTCCCCTGTCATGGTCAGTCTAGCTTGTGGAAGTCTTTCAGGAATAGCATCTTCAACAGC 779
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 TTCCCCTATCATGGTCAGTCTAGCTTGTGGAAGTCTTTCAGGAATAGCATCTTCAACAGC 973
Query 780 TACGTTTCCATTGGATCTGGTGAGAAGAAGGAAGCAGCTAGAAGGAATAGGCGGGCGAGC 839
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 974 TACGTTTCCATTGGATCTGGTGAGAAGAAGGAAGCAGCTGGAAGGAATAGGCGGGCGAGC 1033
Query 840 GGTAGTGTACAAGACAGGATTGTTAGGCACATTAAAGCGTATAGTTCAGACGGAAGGAGC 899
|||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1034 GGTAGTGTACAAGACAGGTTTGTTAGGCACATTAAAGCGTATTGTTCAAACGGAAGGAGC 1093
Query 900 AAGAGGTTTGTACAGAGGAATTCTTCCAGAGTACTACAAAGTGGTACCTGGTGTTGGGAT 959
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1094 GAGAGGCCTGTACAGAGGAATTCTTCCAGAGTACTACAAAGTGGTACCTGGTGTAGGGAT 1153
Query 960 TTGCTTCATGACCTACGAGACACTCAAGCTTTACTTCAAAGATCTTTCCTCAAAGCTATA 1019
||||||||||||||||||||||||||||||||||||||| |||||||| || || |||||
Sbjct 1154 TTGCTTCATGACCTACGAGACACTCAAGCTTTACTTCAAGGATCTTTCTTCGAATCTATA 1213
Query 1020 ACGGTTTAAACTGTTGATAGA 1040
|||||||||| |||| ||||
Sbjct 1214 ACGGTTTAAAAGGTTGGTAGA 1234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50987659205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5