BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938511
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55672.1 | Symbols: | Plant self-incompatibility protein S1... 704 0.0
AT3G55665.1 | Symbols: | Plant self-incompatibility protein S1... 693 0.0
AT3G55677.1 | Symbols: | Plant self-incompatibility protein S1... 453 8e-127
> AT3G55672.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:20660960-20661460 FORWARD LENGTH=501
Length=501
Score = 704 bits (381), Expect = 0.0
Identities = 463/503 (92%), Gaps = 4/503 (1%)
Strand=Plus/Plus
Query 22 ATGGCTTCCATTACCAATTCTCATTTTATATTGTTGTTTCTAATCTCTTCTACCTTTATT 81
|||||||||||||| ||||||||| ||||||| |||||| ||||||||||||| ||||||
Sbjct 1 ATGGCTTCCATTACTAATTCTCATCTTATATTATTGTTTATAATCTCTTCTACTTTTATT 60
Query 82 GTTTTTACGTTAGCACTAGATTTTTCAGATGTTGCAGCAGAAGCACCAGACGGCTTCTTA 141
||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| |||
Sbjct 61 GTTTTTACGTTAGCATTAGATTTTTCAGATGTTCCAGCAGAAGCACCAGATGGCTTTTTA 120
Query 142 CCTCTAGCCAAAAAGCATGTTGTAATTCGCAATACCGTAGAGAATGGAGAAGAGTTGAAT 201
||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 121 CCTTTAGCCAAAAAGCATGTTGTAATTCGCAATACTGTAGAGAATGGAGAAGGGTTGAAT 180
Query 202 ATACATTGCAAATCTAGTGAGGATGATTTGGGGCATATCCATCTTAAACATGGACATACT 261
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 181 ATACATTGCAAATCCAGTGAGGATGATTTGGGACATATCCATCTTAAACATGGGCATACT 240
Query 262 TGGGATTTCAGATTTCATGTTAACATGTCAAAATCTACAAAATTTCGTTGTCATTTTTGG 321
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 TGGGATTTCAGGTTTCATGTTAACATGTCAAAATCTACAAAATTTCGTTGCCATTTTTGG 300
Query 322 TGGTATGCAGGCGGTACCGATTATTTT-AATTACTGGTTTGATATATTTAAAGTATCCAG 380
|||||||||||||||| |||| |||| |||||||||||||||||||||||| |||| ||
Sbjct 301 TGGTATGCAGGCGGTAATGATT-TTTTCAATTACTGGTTTGATATATTTAAAATATCTAG 359
Query 381 AGACGATAAACCATCGGGAAGGTATCCAGTTTGCAAAGAATGCATTTGGGAGTTAAACCA 440
||| || |||||||| |||| ||||| |||||||||||||||||||||||||||||||
Sbjct 360 AGATGACAAACCATCAGGAAAATATCCTGTTTGCAAAGAATGCATTTGGGAGTTAAACCG 419
Query 441 ATACGGCTCTGAAGAC-ATTATTTGTCGTATAAATCGTGATGGATCAGATCCTTGGTGTT 499
|||||| | ||||| | || ||||||||||||||||||||| |||||||| ||||||||
Sbjct 420 ATACGGTTTTGAAGGCTAT-ATTTGTCGTATAAATCGTGATAAATCAGATCTTTGGTGTT 478
Query 500 TCACAATGGACGATAAACCTTAA 522
|| | ||||||||||||||||||
Sbjct 479 TCTCGATGGACGATAAACCTTAA 501
> AT3G55665.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:20653691-20654218 FORWARD LENGTH=528
Length=528
Score = 693 bits (375), Expect = 0.0
Identities = 479/528 (91%), Gaps = 12/528 (2%)
Strand=Plus/Plus
Query 1 TCCAGCCTAATTTACATAAGCATGGCTTCCATTACCAATTCTCATTTTATATTGTTGTTT 60
||||||||||||||||| | ||||||||||||||||||||||||| ||| ||||||||||
Sbjct 7 TCCAGCCTAATTTACATGACCATGGCTTCCATTACCAATTCTCATCTTACATTGTTGTTT 66
Query 61 CTAATCTCTTCTACCTTTATTGTTTTTACGTTAGCACTAGATTTTTCAGATGTTGCAGCA 120
|||||||||||||| |||||| ||||||||||||||||||| |||||||||||| |||||
Sbjct 67 CTAATCTCTTCTACTTTTATTATTTTTACGTTAGCACTAGAATTTTCAGATGTTACAGCA 126
Query 121 GAAGCACCAGACGGCTTCTTACCTCTAGCCAAAAAGCATGTTGTAATTCGCAATACCGTA 180
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 127 GAAGCACCAGACGGCTTCTTACCTTTAGCCAAAAAGCATGTTGTAATTCGCAATACTGTA 186
Query 181 GAGAATGGAGAAGAGTTGAATATACATTGCAAATCTAGTGAGGATGATTTGGGGCATATC 240
| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 187 AAAAATGGAGAAGAGTTGAATATACATTGCAAATCCAGTGAAAATAATTTGGGGCATATC 246
Query 241 CATCTTAAACATGGACATACTTGGGATTTCAGATTTCATGTTAACATGTCAAAATCTACA 300
|||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 247 CATCTTAAACATGGGCATACTTGGGATTTCAGATTTCTTGTTAACATATCAAAATCTACA 306
Query 301 AAATTTCGTTGTCATTTTTGGTGGTATGCAGGCGGTACCGA--TTATTTTAATTACTGGT 358
||||||||||||||||||||||||||||||||| || || || ||||||||||||||
Sbjct 307 AAATTTCGTTGTCATTTTTGGTGGTATGCAGGCAATAA-GAAATT-TTTTAATTACTGGT 364
Query 359 TTGATATATTTAAAGTATCCAGAGACGATAAACCATCGGGAAGGTATCCAGTTTG-CAAA 417
|||||||||||| |||||||||||| ||||||||||| ||||| ||||||||||| |||
Sbjct 365 TTGATATATTTACAGTATCCAGAGATGATAAACCATCCGGAAGATATCCAGTTTGTCAA- 423
Query 418 GAATGCATTTGGGAGTTAAACCAATACGGCTC-TGAAGAC-ATTATTTGTCGTATAAATC 475
|||||||||||||| |||| | | ||||| || ||||| | || |||| |||||||||||
Sbjct 424 GAATGCATTTGGGATTTAAGCGATTACGG-TCCTGAAGGCTAT-ATTTATCGTATAAATC 481
Query 476 GTGATGGATCAGATCCTTGGTGTTT-CACAATGGACGATAAACCTTAA 522
||||| |||||| ||||||||||| | ||||||||||| |||| |||
Sbjct 482 GTGATAAATCAGAGCCTTGGTGTTTTC-CAATGGACGATGAACCCTAA 528
> AT3G55677.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:20663983-20664576 FORWARD LENGTH=594
Length=594
Score = 453 bits (245), Expect = 8e-127
Identities = 441/532 (83%), Gaps = 27/532 (5%)
Strand=Plus/Plus
Query 9 AATTTACATAAGCATGGCTTCCATTACCAATTCTCATTTTATATTGTTGTTTCTAATCTC 68
|||||||| || ||||||||||||||| |||||||||| ||||||||||||||| ||||
Sbjct 1 AATTTACAGAACCATGGCTTCCATTACTAATTCTCATTATATATTGTTGTTTCTTATCTT 60
Query 69 TTCTACCTTTATTGTTTTTACGTTAGCACTAGATTTTTCAGATGTTGCAGCAGAAGCACC 128
|| ||| |||||||| ||||| |||||| ||||||| ||| |||||||||||||||||||
Sbjct 61 TTTTACTTTTATTGTATTTACTTTAGCATTAGATTTATCAAATGTTGCAGCAGAAGCACC 120
Query 129 AGACGGCTTCTTACCTCTAG-CCAAAAAGCATGTTGTAATTCGCAATACCGTAGAGAATG 187
||||||||| |||||||| | |||||||||| ||| |||||||||| || || |||| |
Sbjct 121 AGACGGCTTGTTACCTCT-GTCCAAAAAGCACGTTTTAATTCGCAACACTGTTCAGAACG 179
Query 188 GAGAAGAGTTGAATATACATTGCAAATCTAGTGAGGATGATTTGGGGCATATCCATCTTA 247
|| ||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 180 GACAAGTTTTGAATATACATTGCAAATCCAGTGAGGATGATTTGGGGCATATCCGTCTTA 239
Query 248 AACATGGACATACTTGGGATTTCAGATTTCATGTTAACATGTCAA-AATCTACAAAATTT 306
||||||| ||||||||| ||||||||||| |||||||||| || || |||| | ||||
Sbjct 240 AACATGGGGATACTTGGGGTTTCAGATTTCGTGTTAACATGGCACTAA-CTACGAGATTT 298
Query 307 CGTTGTCATTTTTGGTGGTATGCAGGCGGTACCGAT-TATT---TTA-A-TTACTGGTTT 360
|||||||| ||||||||||||||| ||| ||| || || ||| | ||||||||||
Sbjct 299 CGTTGTCACTTTTGGTGGTATGCACGCG--ACC-ATCTAGGCCATTATAGTTACTGGTTT 355
Query 361 GATATATTTAAAGTATCCAGAGACGATAAACCATCGGGAAGGTATCCAGTTTGCAAAGAA 420
|||||||||| |||| |||||||||||| |||| |||| |||||| ||||| | |||
Sbjct 356 GATATATTTACTGTATACAGAGACGATAATCCATTTGGAAAATATCCAATTTGCGATGAA 415
Query 421 TGCATTTGGGAGT-TAAACCAAT-ACGGCTCTGAAGACATTATTTGTCGTATAAATCGTG 478
||| ||||| | | | || ||| | | | ||| || |||||||||||||||||||||
Sbjct 416 TGCGTTTGGAA-TATGTACGAATTAAG--T--GAAAACTTTATTTGTCGTATAAATCGTG 470
Query 479 ATGGATCAG-ATCCTTGGTGTTTCACAATGGAC-GATAAACCTTAAGAAGAA 528
|| ||| | || ||||||| | ||||||| || ||| ||||||||||
Sbjct 471 ATCAATCTGGAT----GGTGTTTTAAAATGGACAGAGAAAA-TTAAGAAGAA 517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26021288146
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5