BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938512
Length=538
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55252.1 | Symbols: | Plant self-incompatibility protein S1... 392 2e-108
> AT3G55252.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:20480799-20481322 REVERSE LENGTH=524
Length=524
Score = 392 bits (212), Expect = 2e-108
Identities = 418/514 (81%), Gaps = 27/514 (5%)
Strand=Plus/Plus
Query 7 TAATTTACACAACCATGTCTTTCATTAA-TAAGCCTCATGTTATATTGTTGT-TCATTAT 64
|||||||| ||||||| |||||| || ||| |||||| ||||| |||||| | || ||
Sbjct 10 TAATTTACTTAACCATGGCTTTCA-CAAGTAAACCTCATTTTATAATGTTGTGT-ATGAT 67
Query 65 CTCTTCTACTTTTATTCTTTTTGTACCTGCGTTAGATT-TGTCAAATGTTCCAGCGGAAT 123
|| || |||| ||||||||||||| |||| |||| || | || ||| ||||||||||
Sbjct 68 CTATTATACTCTTATTCTTTTTGTGTCTGCATTAG-TTCTTTCTGATGCTCCAGCGGAAG 126
Query 124 CACCAACTTCGGACGAG-GACGGCTTCTTACCTCT-AGCTGGAAAACATGTTGTAATCTG 181
|||||||||||| || | || ||||| |||||||| ||| | |||||||||||||||| |
Sbjct 127 CACCAACTTCGGGCG-GCGATGGCTTGTTACCTCTAAGC-GAAAAACATGTTGTAATCCG 184
Query 182 CAACAAAGTT-AAAAACAGAGAAACTTTGAATGTACATTGCAGATCTAGTGAAGATGATT 240
|||| ||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 185 CAAC-AAGTTAAAAAATAGAGAAATTTTGAATGTACATTGCAGATCTAGTGAAGATGATT 243
Query 241 T-GGGATTAATCCATATTCCTTGGAATCATACTTGGGGTTTTAGATTTCATGTTAACATT 299
| ||| |||| | |||||||||||||| | | |||||||| |||||| |||||||| ||
Sbjct 244 TTGGGCTTAAAC-ATATTCCTTGGAATGGTGCATGGGGTTTCAGATTTTATGTTAACTTT 302
Query 300 TGGAAATCTACAAAATTTCATTGTCATTTTACATGGC-TCGGAGGAGGATCTCATTATTT 358
| ||| |||| ||||||| |||||||||||| |||| | || ||||||||||||||
Sbjct 303 TTTAAAACTACGAAATTTCGTTGTCATTTTACGTGGCATAAT-GGTGGATCTCATTATTT 361
Query 359 T-ACTATATTTAAAGTATCGAGAGACGATAGTATAATTGGATATAAT---G-TTTGTAAA 413
| | ||||||||||| ||| ||||| |||||| | ||||| | | | | ||||||||
Sbjct 362 TTA-TATATTTAAAGCATCAAGAGATGATAGTCCAGTTGGAGA-ACTTCCGATTTGTAAA 419
Query 414 GAATGTATTTGGGAGGTGGGAAGAA-ACGATGAAAACCCTATTTGTCGTGTTTCTCGCGA 472
|||||||| ||||| || ||| || |||||| || ||||||||||||| ||||||| ||
Sbjct 420 GAATGTATATGGGAAGTAGGAC-AAGACGATGTAACCCCTATTTGTCGTATTTCTCGTGA 478
Query 473 TAA-ATCAATACTTCCCCACTGTTTCCAATGGGA 505
|| | || | | || |||||||| |||||||
Sbjct 479 GAAGAAAAACAAT-CCATACTGTTTCGAATGGGA 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25770117411
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5