BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg938515 Length=916 Score E Sequences producing significant alignments: (Bits) Value AT3G55690.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1256 0.0 > AT3G55690.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39870.1); Has 76 Blast hits to 69 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 3; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20666972-20668505 FORWARD LENGTH=1246 Length=1246 Score = 1256 bits (680), Expect = 0.0 Identities = 845/923 (92%), Gaps = 18/923 (2%) Strand=Plus/Plus Query 1 TGTCTTTACTCATTGTCGTTATGGTCGCGCCGCCTATATCCGCCGCGTCCTTAGAGCTCC 60 |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| Sbjct 44 TGTCTTTACTCATTGTCGTTATGGTCGCGCCGCCTATAGCCGCCGCGTCGTTAGAGCTCC 103 Query 61 CTCCTCCTTTCCCCGCCGTCTTCGAACAACCAATGGAGAAATTCAGCTTCCCGAATGAGT 120 ||||||| ||||||||||||||||||||||||||||||||| ||| |||||| || |||| Sbjct 104 CTCCTCCGTTCCCCGCCGTCTTCGAACAACCAATGGAGAAACTCACCTTCCCTAACGAGT 163 Query 121 TCCCTTACGAGTTTG---CCTCAACGTTTTCCACTTCTCCAGAAGACTCAACGGAGACGG 177 ||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| | Sbjct 164 TCCCTTACGAGTTTGCCTCCTCAACGTTTTCAACTTCTCCGGAAGACTCAACGGAGACAG 223 Query 178 AAGATGAAACAAGCGACGACGAAGATGACTTCTTAGCCGGGTTAACTCGAAGACTCGCTC 237 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 224 AAGATGAAACAACCGACGACGAAGATGACTTCTTAGCCGGGTTAACTCGCAGACTCGCTC 283 Query 238 TCTCGACTCAGCGCCTCTCTTCTCCTTCCTTCGTCGCCGACAAGTCTCAGATGAAACCTA 297 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 284 TCTCGACTCAGCGCCTCTCTTCTCCTTCCTTCGTCACCGACAAGTCTCAGATGAAACCCA 343 Query 298 AAGTCACCGAGTCAACTCAGAGTGGACTCGGAAGTCCTAATGGACCGTTTTCTCAAGCTC 357 ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 344 AAGTCACAGAGTCAACTCAGAGTGGACTCGGAAGTCCTAATGGTCCGTTTTCTCAAGTTC 403 Query 358 CTTCACCGCCGACATCTCCGTTTCGTGAAGAAGACTCTTTGAAAGTGTTATCTGCTGCAG 417 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 404 CTTCACCGCCGACATCTCCGTCTCGTGAAGAAGACTCTTTGAAAGTGTTATCTGCTGCAG 463 Query 418 CTGGAGAAGTCGCCAAGATCAAAAAGGCTAACTTTGATGCTAAACCCATCAGCCGCCCAA 477 |||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| Sbjct 464 CTGGAGAAGTCGCCAAGATCAAAAAGGCCAATTTTGATGCTAAACCCATCAGCTACCCAA 523 Query 478 ACCCTAACCCTAGTTCCTTAATCC--CTTTTCCTCAAAACGCAGCGTTTTATAACTACTA 535 |||||||||||| || ||||| || |||| |||||||||| || | |||||||| ||| Sbjct 524 ACCCTAACCCTAATTACTTAA-CCAGCTTT-CCTCAAAACGTGGCATATTATAACTGCTA 581 Query 536 CTGGCTATGGCAGCCGCATTATCATCAATCTCAGATGGGAATAGTCCCAAATGCTTGGCT 595 |||| ||||| |||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 582 CTGGTTATGGGAGCCGCATTATCCTCAATCTCAGATGGGAATAGTTCCAAATGCTTGGCA 641 Query 596 TGTGTCTCCTTCTCCCGTTAGAGGCGTATACACCGCT-CCAACCGCCGTCAAATCGCCGT 654 | | |||||||||||||||||| | | |||||| || ||||||||||| |||||||||| Sbjct 642 TATACCTCCTTCTCCCGTTAGAGCCTTTTACACC-CTTCCAACCGCCGTTAAATCGCCGT 700 Query 655 CTACTGGTACCGGTGTGTTCCTTCCCCGGAAATACTCAATCCCTTCCGATTCCC-G--GA 711 | ||||||||||| || |||||||||||||||||||||| |||||| ||||||| | || Sbjct 701 CGACTGGTACCGGCGTTTTCCTTCCCCGGAAATACTCAAACCCTTCTGATTCCCCGAAGA 760 Query 712 AGAATTCAGGAGGTGGATGTGGTAAGGTTATTAACCAACAAAAACCTAAAATTGAAGAGT 771 |||| ||||||| |||||||| ||||||| ||||||| ||||||||||||||||||| || Sbjct 761 AGAAATCAGGAGATGGATGTGTTAAGGTTGTTAACCAGCAAAAACCTAAAATTGAAGTGT 820 Query 772 TATCGGGTCGGTGTAAACCAAATTCGAAAGCTGGTCCCTCTACAGGACGCAGCAAAA-CG 830 || ||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 821 TACCGGTTCGCTGTAAACCAAATTCGAAAGCTGGTCTCTCTACAGGACGCAGCAAAATCG 880 Query 831 GATTACGTAGCTGGTGGTGGTTGTTTGAAGCAAGAAA-GACCTCTTCCACAAGAATGGAT 889 ||||||||||||||||||| ||| ||||||| |||| | ||||||| |||||||||||| Sbjct 881 -ATTACGTAGCTGGTGGTGGATGTCTGAAGCATGAAAAG-CCTCTTCTACAAGAATGGAT 938 Query 890 GTACTGAGAGTTTGAATTAGGTT 912 |||||||| ||||||||||||| Sbjct 939 GTACTGAG--TTTGAATTAGGTT 959 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44758624977 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5