BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938515
Length=916
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55690.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1256 0.0
> AT3G55690.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G39870.1);
Has 76 Blast hits to 69 proteins in 15 species: Archae - 0;
Bacteria - 0; Metazoa - 4; Fungi - 3; Plants - 69; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20666972-20668505
FORWARD LENGTH=1246
Length=1246
Score = 1256 bits (680), Expect = 0.0
Identities = 845/923 (92%), Gaps = 18/923 (2%)
Strand=Plus/Plus
Query 1 TGTCTTTACTCATTGTCGTTATGGTCGCGCCGCCTATATCCGCCGCGTCCTTAGAGCTCC 60
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 44 TGTCTTTACTCATTGTCGTTATGGTCGCGCCGCCTATAGCCGCCGCGTCGTTAGAGCTCC 103
Query 61 CTCCTCCTTTCCCCGCCGTCTTCGAACAACCAATGGAGAAATTCAGCTTCCCGAATGAGT 120
||||||| ||||||||||||||||||||||||||||||||| ||| |||||| || ||||
Sbjct 104 CTCCTCCGTTCCCCGCCGTCTTCGAACAACCAATGGAGAAACTCACCTTCCCTAACGAGT 163
Query 121 TCCCTTACGAGTTTG---CCTCAACGTTTTCCACTTCTCCAGAAGACTCAACGGAGACGG 177
||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 164 TCCCTTACGAGTTTGCCTCCTCAACGTTTTCAACTTCTCCGGAAGACTCAACGGAGACAG 223
Query 178 AAGATGAAACAAGCGACGACGAAGATGACTTCTTAGCCGGGTTAACTCGAAGACTCGCTC 237
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 224 AAGATGAAACAACCGACGACGAAGATGACTTCTTAGCCGGGTTAACTCGCAGACTCGCTC 283
Query 238 TCTCGACTCAGCGCCTCTCTTCTCCTTCCTTCGTCGCCGACAAGTCTCAGATGAAACCTA 297
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 284 TCTCGACTCAGCGCCTCTCTTCTCCTTCCTTCGTCACCGACAAGTCTCAGATGAAACCCA 343
Query 298 AAGTCACCGAGTCAACTCAGAGTGGACTCGGAAGTCCTAATGGACCGTTTTCTCAAGCTC 357
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 344 AAGTCACAGAGTCAACTCAGAGTGGACTCGGAAGTCCTAATGGTCCGTTTTCTCAAGTTC 403
Query 358 CTTCACCGCCGACATCTCCGTTTCGTGAAGAAGACTCTTTGAAAGTGTTATCTGCTGCAG 417
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 404 CTTCACCGCCGACATCTCCGTCTCGTGAAGAAGACTCTTTGAAAGTGTTATCTGCTGCAG 463
Query 418 CTGGAGAAGTCGCCAAGATCAAAAAGGCTAACTTTGATGCTAAACCCATCAGCCGCCCAA 477
|||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||
Sbjct 464 CTGGAGAAGTCGCCAAGATCAAAAAGGCCAATTTTGATGCTAAACCCATCAGCTACCCAA 523
Query 478 ACCCTAACCCTAGTTCCTTAATCC--CTTTTCCTCAAAACGCAGCGTTTTATAACTACTA 535
|||||||||||| || ||||| || |||| |||||||||| || | |||||||| |||
Sbjct 524 ACCCTAACCCTAATTACTTAA-CCAGCTTT-CCTCAAAACGTGGCATATTATAACTGCTA 581
Query 536 CTGGCTATGGCAGCCGCATTATCATCAATCTCAGATGGGAATAGTCCCAAATGCTTGGCT 595
|||| ||||| |||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 582 CTGGTTATGGGAGCCGCATTATCCTCAATCTCAGATGGGAATAGTTCCAAATGCTTGGCA 641
Query 596 TGTGTCTCCTTCTCCCGTTAGAGGCGTATACACCGCT-CCAACCGCCGTCAAATCGCCGT 654
| | |||||||||||||||||| | | |||||| || ||||||||||| ||||||||||
Sbjct 642 TATACCTCCTTCTCCCGTTAGAGCCTTTTACACC-CTTCCAACCGCCGTTAAATCGCCGT 700
Query 655 CTACTGGTACCGGTGTGTTCCTTCCCCGGAAATACTCAATCCCTTCCGATTCCC-G--GA 711
| ||||||||||| || |||||||||||||||||||||| |||||| ||||||| | ||
Sbjct 701 CGACTGGTACCGGCGTTTTCCTTCCCCGGAAATACTCAAACCCTTCTGATTCCCCGAAGA 760
Query 712 AGAATTCAGGAGGTGGATGTGGTAAGGTTATTAACCAACAAAAACCTAAAATTGAAGAGT 771
|||| ||||||| |||||||| ||||||| ||||||| ||||||||||||||||||| ||
Sbjct 761 AGAAATCAGGAGATGGATGTGTTAAGGTTGTTAACCAGCAAAAACCTAAAATTGAAGTGT 820
Query 772 TATCGGGTCGGTGTAAACCAAATTCGAAAGCTGGTCCCTCTACAGGACGCAGCAAAA-CG 830
|| ||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 821 TACCGGTTCGCTGTAAACCAAATTCGAAAGCTGGTCTCTCTACAGGACGCAGCAAAATCG 880
Query 831 GATTACGTAGCTGGTGGTGGTTGTTTGAAGCAAGAAA-GACCTCTTCCACAAGAATGGAT 889
||||||||||||||||||| ||| ||||||| |||| | ||||||| ||||||||||||
Sbjct 881 -ATTACGTAGCTGGTGGTGGATGTCTGAAGCATGAAAAG-CCTCTTCTACAAGAATGGAT 938
Query 890 GTACTGAGAGTTTGAATTAGGTT 912
|||||||| |||||||||||||
Sbjct 939 GTACTGAG--TTTGAATTAGGTT 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44758624977
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5