BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938524
Length=641
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55770.7 | Symbols: WLIM2b | GATA type zinc finger transcrip... 636 0.0
AT2G39900.1 | Symbols: WLIM2a | GATA type zinc finger transcrip... 545 1e-154
> AT3G55770.7 | Symbols: WLIM2b | GATA type zinc finger transcription
factor family protein | chr3:20703222-20705206 FORWARD
LENGTH=1082
Length=1082
Score = 636 bits (344), Expect = 0.0
Identities = 368/380 (97%), Gaps = 0/380 (0%)
Strand=Plus/Plus
Query 1 GTGAAGGTAAGGCTTTGAGGATGTCTTTTACAGGAACTCAACAGAAATGCAAGGCTTGTG 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 GTGAAGGCAAGGCTTTGAGGATGTCTTTTACAGGAACTCAACAGAAATGCAAGGCTTGTG 329
Query 61 AGAAGACTGTTTATGCTGTTGAGCTTCTCTCAGCTGATGGTGTTGGCTATCACAAGTCTT 120
||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 330 AGAAGACTGTTTATGCTGTTGAGCTTCTCTCTGCTGATGGAGTTGGATATCACAAGTCTT 389
Query 121 GCTTCAAATGCACTCACTGCAAAAGCAGGCTTCAGCTGAGCAGTTATTCATCAATGGAAG 180
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 390 GCTTCAAATGCACTCACTGCAAAAGCAGGCTTCAGCTGAGTAGTTACTCATCAATGGAAG 449
Query 181 GTGTGTTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAGAGTGGTAGTTTCAACA 240
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 450 GTGTTTTGTACTGTAAGCCTCATTTTGAGCAGCTCTTTAAGGAGAGTGGTAGTTTCAACA 509
Query 241 AGAACTTTCAGTCACCTGCAAAACCGGCTGACAAATCAACTCCTGAGCTGACAAGGACGC 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 510 AGAACTTTCAGTCACCTGCAAAATCGGCTGACAAATCAACTCCTGAGCTGACAAGGACGC 569
Query 301 CTAGCCGAGTTGCCGGCAGGTTCTCTGGTACACAAGAGAAATGCGCCACTTGCAGTAAAA 360
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 570 CTAGCCGAGTTGCTGGCAGGTTCTCTGGTACACAAGAGAAATGCGCCACTTGTAGTAAAA 629
Query 361 CTGTGTATCCTATCGAAAAG 380
||||||||||||| ||||||
Sbjct 630 CTGTGTATCCTATTGAAAAG 649
Score = 407 bits (220), Expect = 7e-113
Identities = 249/263 (95%), Gaps = 2/263 (1%)
Strand=Plus/Plus
Query 381 GTAACAGTAGAGAGCCAGACATATCACAAGTCCTGCTTCAAGTGCTCACATGGAGGCTGC 440
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 752 GTAACAGTCGAGAGCCAGACATATCACAAGTCCTGCTTCAAGTGCTCACATGGAGGTTGC 811
Query 441 CCGATTTCGCCTTCCAACTACGCAGCTCTTGAAGGAATCCTGTACTGCAAGCACCATTTC 500
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 CCAATTTCACCTTCCAACTACGCAGCTCTTGAAGGAATCCTGTACTGCAAGCACCATTTC 871
Query 501 GCTCAGCTCTTCAAGGAAAAGGGAAGCTACAACCACTTGATCAAATCCGCTTCCATCAAA 560
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 872 GCTCAGCTCTTCAAGGAGAAGGGAAGTTACAACCACTTAATCAAATCCGCTTCCATCAAA 931
Query 561 CGCTCTGCAGCCGCTGCAGTCGCTGCCGGTGTACCAGCAACCTCGGTTCCTGAATCTTAA 620
|||||||||||||| |||||||| ||||||||||||||| |||| |||||||||||||||
Sbjct 932 CGCTCTGCAGCCGCAGCAGTCGCCGCCGGTGTACCAGCAGCCTCCGTTCCTGAATCTTAA 991
Query 621 AATTCAATAAT--CTCCTCTCTA 641
||| ||||||| ||||||||||
Sbjct 992 AATCCAATAATTTCTCCTCTCTA 1014
> AT2G39900.1 | Symbols: WLIM2a | GATA type zinc finger transcription
factor family protein | chr2:16658656-16660437 FORWARD
LENGTH=1003
Length=1003
Score = 545 bits (295), Expect = 1e-154
Identities = 477/565 (84%), Gaps = 11/565 (2%)
Strand=Plus/Plus
Query 20 GATGTCTTTTACAGGAACTCAACAGAAATGCAAGGCTTGTGAGAAGACTGTTTATGCTGT 79
|||||| |||||||||||||| |||||||||| ||| || |||||||| || || ||||
Sbjct 230 GATGTCGTTTACAGGAACTCAGCAGAAATGCAGGGCGTGCGAGAAGACAGTGTACCCTGT 289
Query 80 TGAGCTTCTCTCAGCTGATGGTGTTGGC-TATCACAAGTCTTGCTTCAAATGCACTCACT 138
|||||||||||||||||||| | | ||||||||| |||||||||||||| ||||||
Sbjct 290 GGAGCTTCTCTCAGCTGATGG-AATCTCTTATCACAAGGCTTGCTTCAAATGCTCTCACT 348
Query 139 GCAAAAGCAGGCTTCAGCTGAGCAGTTATTCATCAATGGAAGGTGTGTTGTACTGTAAGC 198
|||||||||| ||||| ||||||| |||||||||||||||||| ||| |||| |||| ||
Sbjct 349 GCAAAAGCAGACTTCAACTGAGCAATTATTCATCAATGGAAGGAGTGGTGTATTGTAGGC 408
Query 199 CTCATTTTGAGCAGCTCTTCAAGGAGAGTGGTAGTTTCAACAAGAACTTTCAGTCACCTG 258
|||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 409 CTCATTTTGAGCAGCTTTTCAAGGAGTCTGGTAGTTTCAGCAAGAACTTTCAGTCACCTG 468
Query 259 CAAAACC---GGCTGACAAATCAACTCCTGAGCTGACA-AGGACGCCTAGCCGAGTTGCC 314
|||| || | |||| || |||| || ||||||| | ||||| ||||| ||| ||||
Sbjct 469 CAAAGCCATTGACTGATAAGCCAACCCCGGAGCTGA-ATAGGACACCTAGTCGACTTGCT 527
Query 315 GGCAGGTTCTCTGGTACACAAGAGAAATGCGCCACTTGCAGTAAAACTGTGTATCCTATC 374
|| | ||||||||| || ||||| |||||||| ||||||| |||||| ||||||||||||
Sbjct 528 GGTATGTTCTCTGGAACGCAAGACAAATGCGCTACTTGCACTAAAACCGTGTATCCTATC 587
Query 375 GAAAAGGTAACAGTAGAGAGCCAGACATATCACAAGTCCTGCTTCAAGTGCTCACATGGA 434
||||||||||| || || |||||| || || || || ||||||||||| || ||||||
Sbjct 588 GAAAAGGTAACTGTGGAAAGCCAGTGTTACCATAAATCTTGCTTCAAGTGTTCTCATGGA 647
Query 435 GGCTGCCCGATTTCGCCTTCCAACTACGCAGCTCTTGAAGGAATCCTGTACTGCAAGCAC 494
||||| ||||| || || || ||||| |||||||| || ||||| ||||||||||||||
Sbjct 648 GGCTGTCCGATATCTCCATCGAACTATGCAGCTCTAGAGGGAATATTGTACTGCAAGCAC 707
Query 495 CATTTCGCTCAGCTCTTCAAGGA-AAAGGGAAGCTACAACCA-CTTGATCAAATCCGCTT 552
|||||||||||||| |||||||| ||||| ||| ||||| || || |||||||| ||||
Sbjct 708 CATTTCGCTCAGCTTTTCAAGGAGAAAGG-AAGTTACAATCATCTC-ATCAAATCTGCTT 765
Query 553 CCATCAAACGCTCTGCAGCCGCTGC 577
||||||||||| || | || |||||
Sbjct 766 CCATCAAACGCGCTACTGCTGCTGC 790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30944234552
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5