BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938526
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55800.1 | Symbols: SBPASE | sedoheptulose-bisphosphatase | ... 2047 0.0
> AT3G55800.1 | Symbols: SBPASE | sedoheptulose-bisphosphatase
| chr3:20709386-20711640 FORWARD LENGTH=1655
Length=1655
Score = 2047 bits (1108), Expect = 0.0
Identities = 1178/1212 (97%), Gaps = 3/1212 (0%)
Strand=Plus/Plus
Query 1 AAAACCTCGAGCTTCTAACTATGGAGACCAGCATCGCGTGCTACTCACGTGGGATCCTTC 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 235 AAAACCTCGAGCTTCTAACAATGGAGACCAGCATCGCGTGCTACTCACGTGGGATCCTTC 294
Query 61 CCCCAAGTGTCTCTTCTCAACGATCCTCTACATTGGTCTCTCCTCCTTCCTTCTCCACAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 295 CCCCAAGTGTCTCTTCTCAACGATCCTCTACATTGGTCTCTCCTCCTTCCTACTCCACAT 354
Query 121 CATCCAGCTTCAAGCGTCTGAAATCGAGCTCAATCTTCGGAGATTCACTACGATTAGCAC 180
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CCTCCAGCTTCAAGCGTCTAAAATCGAGCTCAATCTTCGGAGATTCACTACGATTAGCAC 414
Query 181 CAAAATCGCAATTTAAAGCCAC-AAAGACTAAGAGCAATGGTGCTCCAAGTGTTACCAAA 239
||||||||||| |||||||||| |||| ||||||||||||||||| ||| ||| ||||||
Sbjct 415 CAAAATCGCAACTTAAAGCCACAAAAG-CTAAGAGCAATGGTGCTTCAACTGTGACCAAA 473
Query 240 TGTGAAATTGGCCAAAGCTTGGAAGAGTTTTTGGCACAAGCAACTCCTGACAAAGGACTG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 474 TGTGAAATTGGCCAAAGCTTGGAAGAGTTTTTGGCACAAGCAACTCCTGACAAGGGATTG 533
Query 300 AGAACTTTGCTCATGTGTATGGGAGAAGCATTGAGGACTATAGCTTTTAAAGTTAGAACA 359
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 534 AGAACTTTGCTGATGTGTATGGGAGAAGCATTGAGAACAATAGCTTTTAAAGTTAGAACA 593
Query 360 GCTTCTTGTGGTGGAACTGCTTGTGTTAATTCCTTTGGTGATGAACAACTCGCTGTCGAT 419
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 594 GCTTCTTGCGGTGGAACAGCTTGTGTTAATTCCTTTGGTGATGAACAACTCGCTGTTGAT 653
Query 420 ATGCTTGCTGATAAGCTTCTCTTTGAGGCTTTGCAATACTCGCATGTGTGCAAGTATGCT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 ATGCTTGCTGATAAGCTTCTCTTTGAGGCTTTGCAATACTCGCATGTGTGCAAGTATGCT 713
Query 480 TGCTCTGAAGAAGTACCTGAGCTTCAAGACATGGGAGGTCCAGTGGAAGGTGGGTTTAGT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TGCTCTGAAGAAGTACCTGAGCTTCAAGACATGGGAGGTCCAGTGGAAGGTGGGTTTAGT 773
Query 540 GTTGCGTTTGATCCATTGGATGGATCAAGCATTGTGGATACAAATTTCACTGTGGGAACC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GTTGCGTTTGATCCATTGGATGGATCAAGCATTGTGGATACAAATTTCACTGTGGGAACC 833
Query 600 ATATTCGGTGTTTGGCCTGGAGACAAGTTAACCGGAGTCACGGGAGGAGATCAAGTGGCT 659
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 834 ATATTCGGTGTTTGGCCTGGAGACAAGTTAACCGGAATCACTGGAGGAGATCAAGTGGCT 893
Query 660 GCAGCCATGGGAATCTACGGTCCACGAACCACTTATGTTTTGGCTGTTAAGGGATTTCCA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 894 GCAGCCATGGGAATCTACGGTCCACGAACCACTTATGTTTTGGCTGTTAAGGGCTTTCCA 953
Query 720 GGAACTCATGAGTTCTTGCTTCTTGATGAAGGGAAATGGCAGCATGTTAAGGAGACAACA 779
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 954 GGAACTCATGAGTTCTTGCTTCTTGATGAAGGGAAATGGCAGCATGTAAAGGAGACAACA 1013
Query 780 GAGATCGCAGAAGGGAAAATGTTCTCACCAGGAAACTTGAGAGCCACATTCGACAACTCC 839
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1014 GAGATCGCAGAAGGGAAAATGTTCTCACCAGGAAACTTAAGAGCCACATTCGACAACTCC 1073
Query 840 GAATACAGCAAGCTGATTGATTACTACGTGAAAGAGAAGTACACACTGAGATACACCGGA 899
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1074 GAATACAGCAAGCTGATTGATTACTACGTGAAAGAGAAATACACACTGCGATACACCGGA 1133
Query 900 GGAATGGTTCCTGACGTTAACCAGATTATTGTGAAGGAGAAAGGAATCTTCACAAATGTG 959
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 GGAATGGTTCCTGATGTTAACCAGATTATTGTGAAGGAGAAAGGAATCTTCACAAATGTG 1193
Query 960 ACTTCTCCTACGGCTAAGGCAAAGTTGAGGCTGTTGTTCGAAGTGGCTCCTCTTGGCCTG 1019
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1194 ACTTCTCCTACGGCTAAGGCAAAGTTGAGGCTGTTGTTTGAAGTGGCTCCTCTTGGCCTG 1253
Query 1020 CTCATAGAGAATGCTGGCGGATTCAGCAGCGATGGATACAAGTCCGTGCTTGACAAGACC 1079
||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||
Sbjct 1254 CTCATAGAGAATGCTGGTGGATTCAGCAGTGATGGACACAAGTCCGTGCTTGACAAGACC 1313
Query 1080 ATCATCAACCTCGACGATAGAACTCAAGTTGCTTATGGCTCAAAGAACGAGATCATCCGC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 ATCATCAACCTCGACGATAGAACTCAAGTTGCTTATGGCTCAAAGAACGAGATCATCCGC 1373
Query 1140 TTCGAAGAAACCCTTTATGGAACGTCAAGACTCAAGAATGTTCCCATTGGAGTTACTGCT 1199
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1374 TTCGAAGAAACCCTTTATGGAACATCAAGACTCAAGAATGTTCCCATTGGAGTTACCGCT 1433
Query 1200 TAGAACC-CATT 1210
||||| | ||||
Sbjct 1434 TAGAAACTCATT 1445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60039851820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5