BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938528
Length=649
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55820.1 | Symbols: | Fasciclin-like arabinogalactan family... 896 0.0
> AT3G55820.1 | Symbols: | Fasciclin-like arabinogalactan family
protein | chr3:20713709-20714805 FORWARD LENGTH=1097
Length=1097
Score = 896 bits (485), Expect = 0.0
Identities = 592/643 (92%), Gaps = 10/643 (2%)
Strand=Plus/Plus
Query 14 ACAAAAA--ATGAAGAAACCTCATTTCTTGAAGAATCCAGtttttttCTTATTTCTTCTC 71
||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| |||
Sbjct 324 ACAAAAACGATGAAGAAACCTCATTTCTTGAAGAATCCAGTGTTTTTCCTATTTCTACTC 383
Query 72 ATCACTGCTTCTTCCTTAACTATACTCATCTTCTCCTTTCTTAAACTACCGGAAACAACT 131
||||||| ||||||| ||||||||||||||||||||||||| ||| ||||||||||| ||
Sbjct 384 ATCACTGTTTCTTCCCTAACTATACTCATCTTCTCCTTTCTCAAATTACCGGAAACACCT 443
Query 132 CCCGCCACCGGTAACCATCTTCGCAAATTTGGAGACGA-CTTATCCGACGAACTCGGTTT 190
| |||| ||||||||||||| |||||| | | |||| || | |||| |||||||||||
Sbjct 444 CTCGCCGCCGGTAACCATCTCCGCAAACTCCGTTACGAGCTCA-CCGATGAACTCGGTTT 502
Query 191 CTTCGGGAAGATGATGATCGAAATGCTACCTGAAGATCTGGTTTTCACAGCCTTCGTACC 250
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 503 ATTCGGGAAGATGATGATCGAAATGCTACCAGAAGATCTGGTTTTCACTGCCTTCGTACC 562
Query 251 GTCGGAAAAATCATTCAGCCGAGATCTAGGGCTGAAATCAAACAATAGCCGTCCGATTAA 310
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||
Sbjct 563 GTCGGAAAAATCATTCAGCCGAGATCTAGGGCTGAAATTAAACACTAGCCGTCCAATTAA 622
Query 311 AT-CC-C-AAGAAGACGACGACGGAGATAACACATACGCCGTCGTATCGAGGATCATGAG 367
|| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 ATCCCACGAAGAAGACGACGACGGAGATAACACATACGCCGTCGTATCGAGGATCATGAG 682
Query 368 TTTCGCGGTGGTTCCTTACAAAGTAGAAGAAGTTGACATAGGGAAAGAAGAAACGGCGTC 427
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 683 TTTCGCGGTGGTTCCTTACAAAGTAGAAGAAGTAGACATAGGGAACGACGAAACGGCGTC 742
Query 428 GTATGAATCGTTGAGTGGTTTCACACTTAAGATTTGGAGAAAGAGAAATGGTGGTGGATT 487
|||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 743 GTATGAGTCGTTGAGTGGTTTCACACTTCAGATTTGGAGAAAAAGAAATGGTGGTGGATT 802
Query 488 GGTCGTTAATGGCGTTAAGACTGAGAAGATGGGTTTAAAGAGAGGGAAAATCATTGCCCA 547
||||||||||||||| |||||||||||||||| ||||||||||| |||||||| | ||
Sbjct 803 AGTCGTTAATGGCGTTGAGACTGAGAAGATGGGATTAAAGAGAGGTAAAATCATCGTACA 862
Query 548 TATAATGAACGGTGTTGTAATGGATTCTGATTTTGCACAATCTCTTGCTTCTTCTACTCC 607
||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 863 TATAATGAATGGTGTTGTAATGGATTCTGATTTCGCACAATCTATTGCTTCTTCTACTCC 922
Query 608 TCAAGACGAAGATGAT---CCATagagaagaagaagaagaaga 647
| |||||||||||||| ||||||||||||||||||||||||
Sbjct 923 TAAAGACGAAGATGATGATCCATAGAGAAGAAGAAGAAGAAGA 965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31346107728
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5