BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938536

Length=409
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G55890.1 | Symbols:  | Yippee family putative zinc-binding p...   625    1e-178


> AT3G55890.1 | Symbols:  | Yippee family putative zinc-binding 
protein | chr3:20740817-20742002 FORWARD LENGTH=591
Length=591

 Score =  625 bits (338),  Expect = 1e-178
 Identities = 388/411 (94%), Gaps = 7/411 (2%)
 Strand=Plus/Plus

Query  1    GAGAtttttttGATTC-AAAGATGGGTAGGGTGTTTATGGTTGATCTGGAAGGGAACATC  59
            |||| ||||| || || ||||||||||||||| |||||||||||||||||||||||||||
Sbjct  73   GAGA-TTTTTGGA-TCAAAAGATGGGTAGGGTTTTTATGGTTGATCTGGAAGGGAACATC  130

Query  60   TACATCTGCAAACTCTGTAAGACCCATCTCTCCACAGACCAAGACATCATCTCCAAGTCT  119
            ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct  131  TACATCTGCAAACTCTGTAAGACCCATCTTTCTACAGACCAAGACATCATGTCCAAGTCT  190

Query  120  TTTCAATGCAAGCATGGAGGGGCTTATCTCTTCAATAACGTTGTAAACGTATCGGTTGGA  179
            |||||||||||| | ||| | |||||||| ||||| ||||||||||||||||| ||||||
Sbjct  191  TTTCAATGCAAGAACGGAAGAGCTTATCTTTTCAACAACGTTGTAAACGTATCTGTTGGA  250

Query  180  GTGAAAGAAGACAGAATGATGATAACTGGACTACACACCGTAGTTGACATTTTCTGTGTT  239
            | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  251  GAGAAAGAAGACAGAATGATGATAACTGGACTACACAACGTAGTTGACATTTTCTGTGTT  310

Query  240  GGTTGTGGATCAAACGTTGGCTGGAAATACGAGTTTGCACATGATAAGAGCCAGAAGTAC  299
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct  311  GGTTGTGGATCAAACGTTGGCTGGAAATACGAGTTTGCACATGAAAAGAGCCAGAAGTAT  370

Query  300  AAGGAAGGAAAATCTGTTCTTGAATTATACAAGATTTCGGGTCCTCATGATAGCAACGAC  359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AAGGAAGGAAAATCTGTTCTTGAATTATACAAGATTTCGGGTCCTCATGATAGCAACGAC  430

Query  360  TTGGTTAGTGATGGAGATGATGCTTGA--G-G-CTTTTTCCTTGTCTAGTT  406
            |||||||||||||||||||||||||||  | | ||||||||||||||||||
Sbjct  431  TTGGTTAGTGATGGAGATGATGCTTGATTGAGGCTTTTTCCTTGTCTAGTT  481



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19353083365


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5