BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938540
Length=637
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55930.1 | Symbols: | Pre-mRNA-splicing factor 3 | chr3:207... 809 0.0
AT1G28060.1 | Symbols: | Pre-mRNA-splicing factor 3 | chr1:977... 699 0.0
AT3G56790.1 | Symbols: | RNA splicing factor-related | chr3:21... 84.2 1e-15
> AT3G55930.1 | Symbols: | Pre-mRNA-splicing factor 3 | chr3:20745382-20746964
REVERSE LENGTH=1314
Length=1314
Score = 809 bits (438), Expect = 0.0
Identities = 567/624 (91%), Gaps = 29/624 (5%)
Strand=Plus/Plus
Query 1 CACAAAGATCAAAGGTGAAAATGGGCAACCTAATGAAGGTTCTTGCGTCTGAAGCAACCC 60
|||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||| |
Sbjct 713 CACAAAAATCAAAGGTGAAAATGAGCAACCTAATGAAGGTTCGTGCGTCTGAAGCAACGC 772
Query 61 AAAACCCAACCAAGCTTGAAAAAGAGATCCGCACAGCAGCTGCTGAGCGTGAACAAGCTC 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 773 AAAACCCAACCAAGCTTGAAAAAGAGATCCGCACAGAAGCTGCTGAGCGTGAACAAGCTC 832
Query 121 ATATGGAAAGGAACGTAGCGAGGAAGCGAACTCCTAAAGAGAAACGTGAGAAGAAAGAAA 180
| ||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 833 ACATGGATAGGAACGTAGCGAGGAAGCTAACTCCTGCAGAGAAACGTGAGAAGAAAGAAA 892
Query 181 GGAAGGTCTTTGATGATCCAACGACAGTTG---AGACGATTGTGTCGGTGTACAAGATCG 237
||||| | |||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 893 GGAAGCTTTTTGGTGATCCAACGACAGTTGTTGAGACGATTGTGTCGGTGTACAAGATCA 952
Query 238 ACAAGAAGCTATCGCATCCCAAAACAAGATTCAAAGTGGAG-AGGAATGCAAAACAGAAC 296
|||||||||||||| |||| |||||||||||||||||| || | ||||||||||||||||
Sbjct 953 ACAAGAAGCTATCGGATCCGAAAACAAGATTCAAAGTG-AGGATGAATGCAAAACAGAAC 1011
Query 297 AAATTAACAGGGTTTTGTGTGATGATGGATA-ATATGAGTGTTGTTGTGGTTGAGGGTAA 355
| ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1012 ATATTAACAGGGTTTAGTGTGATGATGGATGGA-ATGAGTGTTGTTGTGGTTGAGGGTAA 1070
Query 356 GAGCAAAGCAATAAAGAGATACGAGAAGCTGATGCTGAAGCGTATAAACTGGgaaaaggc 415
||| ||||||||||| || |||||||||||||||||||||||||||||||||||| |
Sbjct 1071 GAGAAAAGCAATAAATAGGTACGAGAAGCTGATGCTGAAGCGTATAAACTGGGAA--G-- 1126
Query 416 aaagaagaaggaagacgaggaagaagatgaagaagaagaagagaaTGGTGGAAACAAGTG 475
|| | ||| | |||| ||||||| ||||||||| ||| |||||||||||||||
Sbjct 1127 AA-GCAGA-G-AAGA--AGGAAGA---TGAAGAAGA-GAA-----TGGTGGAAACAAGTG 1172
Query 476 TTGGTTGGTTTGGCAAGGAAGTGTTGAGAAACCGAGTTTTCATAGGTTTCATGTACAAGA 535
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 TTGTTTGGTTTGGCAAGGAAGTGTTGAGAAACCGAGTTTTCATAGGTTTCATGTACAAGA 1232
Query 536 GTGCTTGACCAAATCTGCTGCCAAGAAAGTTTTCACA-GATGCTGGTGTTGCTCACTACT 594
||||||||||||||| | ||||||||||||||||| | |||||||||||||||||||| |
Sbjct 1233 GTGCTTGACCAAATCCGATGCCAAGAAAGTTTTCA-ATGATGCTGGTGTTGCTCACTA-T 1290
Query 595 TGG-ATCTTGCTCTCAATAACTAA 617
||| |||||||||||||| |||||
Sbjct 1291 TGGGATCTTGCTCTCAATTACTAA 1314
> AT1G28060.1 | Symbols: | Pre-mRNA-splicing factor 3 | chr1:9779138-9782700
FORWARD LENGTH=2604
Length=2604
Score = 699 bits (378), Expect = 0.0
Identities = 542/619 (88%), Gaps = 19/619 (3%)
Strand=Plus/Plus
Query 3 CAAAGATCAAAGGTGAAAATGGGCAACCTAATGAAGGTTCTTGCG-TCTGAAGCAACCCA 61
|||| | |||||||||| ||| ||||| ||||||||||||||| | |||||||| |||||
Sbjct 1774 CAAA-AGCAAAGGTGAAGATGAGCAACTTAATGAAGGTTCTTG-GTTCTGAAGCGACCCA 1831
Query 62 AAACCCAACCAAGCTTGAAAAAGAGATCCGCACAGCAGCTGCTGAGCGTGAACAAGCTCA 121
| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1832 AGACCCAACAAAGCTTGAAAAAGAGATCCGCACAGCAGCTGCTGAGCGTGAACAGGCTCA 1891
Query 122 TATGGAAAGGAACG-TAGCGAGGAAGCGAACTCCTAAAGAGAAACGTGAGAAGAAAGAAA 180
|| || ||||| | | || |||||| ||||||| ||||||||||||||||||||| |
Sbjct 1892 TACAGATAGGAATGCT-GCCCGGAAGCTAACTCCTGCAGAGAAACGTGAGAAGAAAGAGA 1950
Query 181 GGAAGGTCTTT-GATGATCCAACGACAGTTGAGACGATTGTGTCGGTGTACAAGATCGAC 239
||||| | ||| ||||||||||| || |||||||||||||||||||||||||||||| |
Sbjct 1951 GGAAGCT-TTTCGATGATCCAACAACGGTTGAGACGATTGTGTCGGTGTACAAGATC-A- 2007
Query 240 AAGAAGCTATCGCATCCC-AAAACAAGATTCAAAGTGGAGAGGAATGCAAAACAGAACAA 298
|| ||| ||||||| ||| |||||||||||||||||||||| |||||||| | ||||||
Sbjct 2008 AA-AAGTTATCGCA-CCCTAAAACAAGATTCAAAGTGGAGATGAATGCAAGAGAGAACAG 2065
Query 299 ATTAACAGGGTTTTGTGTGATGATGGAT-AATATGAGTGTTGTTGTGGTTGAGGGTAAGA 357
||||||||||| | ||||||||| |||| || |||||||| |||||||||||||| ||||
Sbjct 2066 ATTAACAGGGTGTAGTGTGATGACGGATGAA-ATGAGTGTGGTTGTGGTTGAGGGCAAGA 2124
Query 358 GCAAAGCAATAAAGAGATACGAGAAGCTGATGCTGAAGCGTATAAACTGGgaaaaggcaa 417
||||||| ||||||||||||| |||||||||| ||||||| |||||||||||| |||||
Sbjct 2125 GCAAAGCGATAAAGAGATACGGGAAGCTGATGATGAAGCGAATAAACTGGGAAGAGGCAG 2184
Query 418 agaagaaggaagacgaggaa-gaagatgaagaagaagaagagaaTGGTGGAAACAAGTGT 476
||| |||||||| | | || ||||| || |||||||||| |||||| ||||||||||||
Sbjct 2185 AGAGGAAGGAAG--G-G-AATGAAGACGAGGAAGAAGAAGTGAATGGCGGAAACAAGTGT 2240
Query 477 TGGTTGGTTTGGCAAGGAAGTGTTGAGAAACCGAGTTTTCATAGGTTTCATGTACAAGAG 536
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||
Sbjct 2241 TGGTTGGTTTGGCAAGGAAGTATTGGGAAACCGAGTTTTCATAGGTTTCATGTACACGAA 2300
Query 537 TGCTTGACCAAATCTGCTGCCAAGAAAGTTTTCACAGATGCTGGTGTTGCTCACTACTTG 596
||| |||| |||| |||||||||||||||||| ||||||||||||| |||||||| |
Sbjct 2301 TGCGTGACGGAATCCACTGCCAAGAAAGTTTTCATGGATGCTGGTGTTGTTCACTACTGG 2360
Query 597 GATCTTGCTCTCAATAACT 615
||||| ||| ||||| |||
Sbjct 2361 GATCTCGCTGTCAATTACT 2379
> AT3G56790.1 | Symbols: | RNA splicing factor-related | chr3:21033835-21034455
REVERSE LENGTH=621
Length=621
Score = 84.2 bits (45), Expect = 1e-15
Identities = 59/65 (91%), Gaps = 3/65 (5%)
Strand=Plus/Plus
Query 1 CACAAAGATCAAAGGTGAAAATGGGCAACCTAATGAAGGTTCTTGCGTCTGAA---GCAA 57
|||||| ||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 542 CACAAAAATCAAAGGTGAAATTGAGCAACCTAATGAAGGTTCTTGCGTCTGAATTAGCAA 601
Query 58 CCCAA 62
|||||
Sbjct 602 CCCAA 606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30743297964
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5