BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938542
Length=2453
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55950.1 | Symbols: CCR3, ATCRR3 | CRINKLY4 related 3 | chr3... 3640 0.0
> AT3G55950.1 | Symbols: CCR3, ATCRR3 | CRINKLY4 related 3 | chr3:20753691-20756395
REVERSE LENGTH=2705
Length=2705
Score = 3640 bits (1971), Expect = 0.0
Identities = 2323/2489 (93%), Gaps = 39/2489 (2%)
Strand=Plus/Plus
Query 1 GTCAAATTCAACCTCTGTAGATGAAGAGGTCTACCAACTCAACCGTGACGTTTTCCGTCA 60
||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 29 GTCAACTTCAACCTCTGTAGATGAAGAGGTTTATCAACTCAACCGTGACGTTTTCCGTCA 88
Query 61 CCGTCACCGTCGCCGTTAT-ATTCTTCTTCCTTTTGTCTCCCGTCACCTCCTTAGGTTCA 119
|||||||| |||||||||| | |||||||||| |||||||||||||||||||||||||||
Sbjct 89 CCGTCACCATCGCCGTTATCA-TCTTCTTCCTCTTGTCTCCCGTCACCTCCTTAGGTTCA 147
Query 120 GGCTCAACTCACGCCGTCGTCTACGGCTCCGACACCGTCTGCGCATTAATCTCCGGCCAA 179
||||||||| |||| ||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct 148 GGCTCAACTTACGCAGTCGTATACGGCTCCGACACCGTCTGCGCATTGATCTCCGGTCAA 207
Query 180 TCCACACAGCGTATCCTCTGTTACGACACCCGCCGTAGTACCAACGTTACTCTAAACCCC 239
||||||| |||||||||||||||||||| || | || || |||||| ||||||||||||
Sbjct 208 CCCACACAACGTATCCTCTGTTACGACACGCGTCTTAATATCAACGTCACTCTAAACCCC 267
Query 240 GGCGTCTCATTCTCCTCAATCGCCGCCGGAAATAATTTCCTCTGCGGTATACGCTCCGGT 299
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 268 GGCGTCTCATTCTCCTCAATAGCCGCCGGAGATAATTTCCTCTGCGGTATACGCTCCGGT 327
Query 300 GGTTACAGCCTTCTCTGTTGGGATAACATCGGAAGCTACTCTCCTAACCGTAAACGAATC 359
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 328 GGTTACAGCCTTCTCTGTTGGGATAACATCGGAAGCTACTCTCCAAACCGGAAACGAATC 387
Query 360 TACCAAAGCGACACCGTTTTACTCGAGAATCTCTCCGTCGGCGATAAACAAATCTGCGCC 419
||||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 388 TACCAAAACGACAACGTTTTACTCGAGACTCTCTCCGTCGGGGATAAACAAATCTGCGCA 447
Query 420 ACCGTTAACGGCACAAATTCGTTAAAATGCTGGAGA-G----G-TTCCGATCAATCAAAC 473
||||||||||| |||||||| ||||||||||||||| | | |||||||||||||||
Sbjct 448 ACCGTTAACGGTACAAATTCCTTAAAATGCTGGAGAGGTTCCGTTTCCGATCAATCAAAA 507
Query 474 CCTCCGAACGAGAGATTCCAG-TCAATTTCATCCGGCGTTGGTTTCTCCTGCGGCGTTTC 532
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 508 CCTCCGAACGAGAGATTCC-GATCAATTTCATCCGGCGTTGGTTTCTCCTGCGGCGTTTC 566
Query 533 GATTCGAAATAACCAAATCCTTTGCTGGGGAACCGATCCGGTTAAATCGAATCAGATCCA 592
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 GATTCGAAATAACCGAATCCTTTGCTGGGGAACCGATCCGGTTAAATCGAATCAGATCCA 626
Query 593 AACCGGATTCGGAAACACGACGATGGTTACCATATCTGCAGGTGAATCACATGCTTGTGG 652
||||||||||||||||||| ||||||| ||||| || |||||| ||||||| ||||||||
Sbjct 627 AACCGGATTCGGAAACACGCCGATGGTGACCATCTCCGCAGGTAAATCACACGCTTGTGG 686
Query 653 ATTAAACACTACTGGGAATTTGGTTTGCATCGGAAACAACGATTCTGGGCAGCTCAATG- 711
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 687 ATTAAACACTACTGGGAATTTGATTTGCATCGGAAACAACGATTCTGGTCAGCTCAATGT 746
Query 712 --TTCCTTCAGATCAACCTAACCATTA--C-TCATCTCTATCTCTCGGATCAAATTTCAC 766
|| || ||||||||||||||| ||| | |||||||| ||||||||||||||||||||
Sbjct 747 TATTGCTCCAGATCAACCTAACCTTTACTCATCATCTCTCTCTCTCGGATCAAATTTCAC 806
Query 767 TTGCGCGATGCGAATCTCGAACAGTTCGGTGGTTTGTTGGGGCGGAGGAGCAGAGAGATT 826
|||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 807 CTGCGCGATGCGAATCTCGAATAATTCTGTGGTTTGTTGGGGCGGAGGAGCAGAGAGATT 866
Query 827 CAACAATGTCACGGATTCGATCTCATTCGAATCGATTTCTTCCGGTCCGGGTCTAATTTG 886
|||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 867 CAACAATGTCACGGATTCGATCTCTTTCGAATCGATTTCCTCGGGTCCGGGTCTAATTTG 926
Query 887 CGGGTTAATTTCAAGTAATCTCTCTATTATGTGTTGGAATCCTTCAAATTTCTCCAGAAT 946
|||||| ||||||||||||||||| || ||||||||||||||| ||||||||||||||||
Sbjct 927 CGGGTTGATTTCAAGTAATCTCTCAATCATGTGTTGGAATCCTACAAATTTCTCCAGAAT 986
Query 947 CTTCCTCCCTTTCCCAGAAGTTTTACCAGGTCCTTGCGTTG-A--ATCATCA---TCTGT 1000
||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| |
Sbjct 987 CTTCCTCCCTTTCCCAGAAGTTTTACCAGGTCCTTGCGTTGAATCATCATCATCCTCTCT 1046
Query 1001 TTGCTCTTGTGGTATTTATCCACAATCTGATAAGCTCTGTTCTGGTTCTGGTTCGATCTG 1060
||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct 1047 TTGCTCTTGTGGTGTTTATCCACAATCTGATAAGCTCTGTTCTGGTACTGGCTCGATTTG 1106
Query 1061 TAAATCATG-CCTGATTCAATTTCCGGCGAGTCCTCCGAGTCAA-------TT------- 1105
||||||||| || |||||||||||| |||||||||||||||||| ||
Sbjct 1107 TAAATCATGTCC-GATTCAATTTCCAGCGAGTCCTCCGAGTCAATTTCCTCTTCCACCAC 1165
Query 1106 -ACCACTTCCACCACCGCCATCACCGCCAACTTCGTCTCCACCGTCGAAAGCTTTAACCA 1164
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||| |
Sbjct 1166 CACCACCACCACCACCGCCATCACCGTCAACTTCATCTCCACCGTCGAAAGCTTTAACAA 1225
Query 1165 GAGGATTATTAGCGTTTGCGATCGTTGGATCAGTTGGAGCGTTTGCAGGGATTTGTAGTG 1224
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1226 GAGGATTATTAGCGTTTGCGATCGTTGGATCAGTTGGAGCATTTGCAGGGATCTGTAGTG 1285
Query 1225 GGGTTTACTGTTTATGGACTGGAGTTTGCTTGGGAAAGAAGAAAGTTCATAACTCGGTTC 1284
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1286 TGGTTTACTGTTTATGGACTGGAGTTTGCTTGGGGAAGAAGAAAGTTCATAACTCGGTTC 1345
Query 1285 AACCGACTATAACTCGCGGCGGCTCTAATAGCCGGTCTAACAGCTCGAATAGCCGGTCGT 1344
||||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 1346 AACCGACGATAACTCGCGGTGGTTCTAATAGCCGGTCTAACAGTTCGAATAGCCGGTCGT 1405
Query 1345 TAACCATAAGACGTCAAGGATCGAGAATGCTATCAATGAGGAGACAGAGAAGTGGAACAT 1404
|| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1406 TATCTATAAGACGTCAAGGATCGAGAATGCTATCAATGAGGAGGCAGAGAAGTGGAACAT 1465
Query 1405 CGTCGATGAAACACGCCGATAAAGCGGAAGAGTTTTCGTTCTCCGAGCTTGCTTCGGCTA 1464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 CGTCGATGAAGCACGCCGATAAAGCGGAAGAGTTTTCGTTCTCCGAGCTTGCTTCGGCTA 1525
Query 1465 CAGGAAACTTTTCTCTAGAGAACAAAATCGGCTCGGGGAGCTTTGGTGTTGTTTACAGAG 1524
| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1526 CCGGAAACTTCTCTCTAGAGAACAAAATCGGTTCGGGGAGCTTTGGTGTTGTTTACAGAG 1585
Query 1525 GCAAACTCAACGACGGGAGAGAAGTAGCGATCAAACGCGGGGAAGTAAACGCGAAGATGA 1584
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1586 GTAAACTCAATGACGGGAGAGAAGTAGCGATCAAACGCGGGGAAGTAAACGCGAAGATGA 1645
Query 1585 AGAAGTTTCAAGAGAAAGAAACCGCGTTTGATTCAGAAATCGCGTTTCTATCGAGGCTTC 1644
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1646 AGAAGTTTCAAGAGAAAGAAACCGCGTTTGATTCGGAAATCGCGTTTTTATCGAGGCTTC 1705
Query 1645 ATCATAAGCATTTAGTGAGACTAGTTGGTTACTGCGAAGAAAGAGAAGAGAAACTTCTCG 1704
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1706 ATCATAAGCATTTGGTGAGACTAGTTGGTTACTGCGAAGAAAGAGAAGAGAAGCTTCTCG 1765
Query 1705 TTTACGATTACATGAAGAATGGTGCGCTCTACGATCATCTACACGACAAGAACAACGTCG 1764
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1766 TTTACGATTACATGAAGAATGGTGCGCTTTACGATCATCTACACGACAAGAACAACGTCG 1825
Query 1765 AAAAACACAGCAGTTTGATCAATTCTTGGAAAATGCGGATCAAAATCGCGTTAGATGCAG 1824
||||||| || || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1826 AAAAACATAGTAGCTTGATCAATTCTTGGAAAATGCGGATCAAAATCGCGTTAGATGCGG 1885
Query 1825 CTAGAGGAATCGAGTATCTACACAATTACGCGGTGCCACCGATTATTCATAGAGATATTA 1884
|||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 1886 CTAGAGGAATCGAGTATCTACATAACTACGCAGTGCCACCGATTATTCATAGAGATATTA 1945
Query 1885 AGTCATCTAACATCTTACTAGACTCGAATTGGGTCGCTAGAGTTTCAGATTTCGGGTTAT 1944
|||| ||||||||||| || ||||| |||||||||||||||||||| |||||||||||||
Sbjct 1946 AGTCGTCTAACATCTTGCTTGACTCTAATTGGGTCGCTAGAGTTTCGGATTTCGGGTTAT 2005
Query 1945 CGTTAATGGGTCCAGAGTTAGGGAAAGATCATAATCCTTATCAACGTCCAATGAAAGCTG 2004
| ||||||||||| | | ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2006 CATTAATGGGTCCGGTGCTAGGGAAAGATCATAATCCTTATCAACGTCCAACGAAAGCTG 2065
Query 2005 CGGGAACGGTTGGATATATCGATCCAGAGTATTACAGTCTCAATGTTTTAACGGATAAGA 2064
|||| ||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 2066 CGGGGACGGTCGGATATATTGATCCAGAGTATTATAGTCTTAATGTTTTAACGGATAAGA 2125
Query 2065 GCGATGTGTATGGACTCGGAGTGGTGTTGTTAGAATTGCTGACAGGAAAAAGAGCTATAT 2124
|||||||||||||||| ||||||||||||||||||||| |||| || |||||||| ||||
Sbjct 2126 GCGATGTGTATGGACTAGGAGTGGTGTTGTTAGAATTGTTGACCGGGAAAAGAGCGATAT 2185
Query 2125 TTAAGAACAATGGTGATGTGGAGGAGGAGGAAGGGAGTGTTCCGGTGCATTTGGTGGATT 2184
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2186 TTAGGAACAATGGTGATGTGGAGGAGGAGGAAGGGTGTGTTCCGGTGCATTTGGTGGATT 2245
Query 2185 ACTCGGTGCCGGCGATATCGGCTGATGAGTTGGGTACAATTTTGGATCCGAGAGTGGGAT 2244
||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| ||||
Sbjct 2246 ACTCGGTTCCGGCGATAACGGCTGATGAGTTGAGTACAATTTTGGATCCGAGAGTTGGAT 2305
Query 2245 CACCTGAGCTAGGGGAAGGAGATGCGGTGGAGCTGGTGGCTTATACGGCGATGCATTGTG 2304
|||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2306 CACCGGAGCTAGGTGAAGGAGATGCGGTGGAGCTGGTGGCTTATACGGCTATGCATTGTG 2365
Query 2305 TGAATGCGGAAGGGAGAAATAGGCCGACGATGACGGATATAGTAGGGAATTTGGAGAGAG 2364
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 2366 TGAATGCGGAAGGGAGAAACAGGCCGACAATGACGGATATAGTAGGGAATTTGGAGAGAG 2425
Query 2365 CATTGGATTTGTGTGGGGATAGTCATGGGAGTATCTCTAGTGGCATTTGTTCTATTGTCT 2424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2426 CATTGGATTTGTGTGGGGATAGTCATGGGAGTATCTCTAGTGGCATTTGTTCTATTGTCT 2485
Query 2425 CTGATTGAGAGATTATATTCaaaaaaaTT 2453
||||||||||||||| ||||||| |||||
Sbjct 2486 CTGATTGAGAGATTAAATTCAAACAAATT 2514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121705003718
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5