BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938543
Length=955
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55960.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 1502 0.0
> AT3G55960.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr3:20760457-20763033 REVERSE
LENGTH=1399
Length=1399
Score = 1502 bits (813), Expect = 0.0
Identities = 912/959 (95%), Gaps = 9/959 (1%)
Strand=Plus/Plus
Query 3 TTCTTCTCC--GACTCTCTCATGGCCGAGTTGACTCAGGCCGATGTTGTTTACTCTCCTC 60
||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 122 TTCTTCTCCGAGACTCTCTTATGGCCGAGTTGACTCAGGCCGATGTTGTATACTCTCCTC 181
Query 61 GTTCCTTTCAAGTGTGGAAGACTTTGGTGAACTGGCTCGCTTTTTTCTATCAGATCTTCC 120
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 182 GTTCGTTTCAAGTGTGGAAGACTTTGGTGAACTGGCTCGCTTTTTTCTATCAGATCTTTC 241
Query 121 TTCAGATCCTTCGTGCCGTTGGTTACCACCCTCTTCTCTCTTCTTCTGCTAAAGCCTCCG 180
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 242 TTCAGATCCTTCGTGCCGTTGGTTATCATCCTCTTCTCTCTTCTTCTGCTAAAGCCTCCG 301
Query 181 CTGATGGTTTCAAACCTTTGCCTGCTATTGAGTTGCTTGATAGGGCTTCCGAATCTCCCA 240
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 302 CTGATGGTTTTAAACCTTTGCCGGCTATTGAGTTGCTTGATAGGGCTTCCGAATCTCCCA 361
Query 241 CCACCGTCGATATCGCATCCACGACGACTTCGGATT-C--CAGCGAT--TGCCAACGCAG 295
||||||| || |||||| ||||||||||||| |||| | ||||||| || | ||||||
Sbjct 362 CCACCGTTGAAATCGCAGCCACGACGACTTCTGATTCCTGCAGCGATGGTG-C-ACGCAG 419
Query 296 CCGCTTTCACAGACTCAAAGTAGTTCTAGACTTGGATGAGACGTTAGTTTGTGCATATGA 355
||| ||||| || || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CCGTTTTCAGAGGCTTAAGGTAGTTCTAGACTTGGATGAGACGTTAGTTTGTGCATATGA 479
Query 356 GACGTCGAGTTTACCCGCTGCTTTACGCAATCAAGCTATTGAAGCTGGATTAAAGTGGTT 415
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 480 GACGTCGAGTTTACCCGCTGCTTTACGCAATCAAGCAATTGAAGCCGGATTAAAGTGGTT 539
Query 416 TGAGCTGGAGTGCTTATCAACAGACAAGGAGTGTGATGGGAAACCTAAGGTCAATTATGT 475
|||||||||||||||||||||||||||||| | ||||||||| |||||| ||||||||||
Sbjct 540 TGAGCTGGAGTGCTTATCAACAGACAAGGAATATGATGGGAAGCCTAAGATCAATTATGT 599
Query 476 CACGGTGTTTGAACGTCCTGGATTGCATGAGTTTTTAGAGAAACTCAGCGAGTTTGCAGA 535
|||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 600 CACGGTGTTTGAGCGTCCTGGATTGCACGAGTTCCTAGAGCAACTCAGCGAGTTTGCAGA 659
Query 536 TCTTGTTCTGTTTACAGCTGGTCTTGAAGGATATGCGAGACCGCTTGTGGATAGGATAGA 595
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 660 TCTTATTCTGTTTACAGCTGGTCTTGAAGGATATGCGAGGCCGCTTGTGGATAGGATAGA 719
Query 596 TACCAGGAAAGTGCTCAGCAACCGACTTTATCGACCTTCAACAGTCAGCACGCAGTACCG 655
||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||
Sbjct 720 TACCAGGAAAGTGCTCACCAACCGACTTTATCGACCCTCAACAGTCAGCACGCAATACCG 779
Query 656 AGATCACGTGAAGGATCTATTAAGCACATCAAAGAATATGTGTAGGACAGTAATTGTTGA 715
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AGATCACGTGAAGGATCTGTTAAGCACATCAAAGAATATGTGTAGGACAGTAATTGTTGA 839
Query 716 CAACAATCCTTTCAGCTTTTTATTGCAACCATCAAATGGAATTCCATGTATTGCATTTTC 775
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 840 CAACAATCCTTTCAGCTTTTTGTTGCAACCATCAAATGGAATTCCATGTATTGCATTTTC 899
Query 776 CGCAGGGCAGCCAAATGATACTCAGCTCTTGGACGTTATTCTACCGCTTCTGAAGCAACT 835
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 900 CGCAGGGCAGCCAAATGATACTCAGCTCTTGGATGTTATTCTACCGCTTCTGAAGCAACT 959
Query 836 GTCAGAGGAAGACGACGTACGACCGACACTTTATGATCGGTTCCGCATGCCTGAATGGTT 895
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GTCAGAGGAAGACGATGTACGACCGACACTTTATGATCGGTTCCGCATGCCTGAATGGTT 1019
Query 896 TGAGAAGCAAGGCATACCACCTTCGTGCTGGAAGCCTTAACCGGTTAAGCGGAAAGTAA 954
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1020 TGAGAAGCAAGGCATACCACCTTCGTGCTGGAAGCCTTAACCGGTTAAGCGGAACGTAA 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46717756710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5