BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg938544 Length=1132 Score E Sequences producing significant alignments: (Bits) Value AT3G55970.1 | Symbols: ATJRG21, JRG21 | jasmonate-regulated gen... 1836 0.0 AT5G05600.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 244 1e-63 AT3G51238.1 | Symbols: | other RNA | chr3:19025110-19026779 RE... 54.7 2e-06 AT3G51240.1 | Symbols: F3H, TT6, F3'H | flavanone 3-hydroxylase... 54.7 2e-06 > AT3G55970.1 | Symbols: ATJRG21, JRG21 | jasmonate-regulated gene 21 | chr3:20766735-20769324 REVERSE LENGTH=1387 Length=1387 Score = 1836 bits (994), Expect = 0.0 Identities = 1086/1131 (96%), Gaps = 3/1131 (0%) Strand=Plus/Plus Query 1 CTTTT-AAAGTAACCAAAGCCATGAATATCTTCCAAGACTGGCCTGAGCCTATAGTCCGT 59 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 40 CTTTTAAAAGTAACCAACGCCATGAATATCTTCCAAGACTGGCCTGAGCCTATAGTCCGT 99 Query 60 GTCCAATCCTTATCTGAAAGCAACCTCGGAGCCATACCAAATCGCTACGTCAAGCCTCTA 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 100 GTCCAATCCTTATCTGAAAGCAACCTCGGAGCCATACCAAATCGCTACGTCAAGCCTCTA 159 Query 120 TCTCAGCGTCCAAACATAACCACTCACAACAAACACAACCCTCACACCACCACCATCCCC 179 ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 160 TCTCAGCGTCCAAACATAACCCCTCACAACAAACACAACCCTCAGACCACCACCATCCCC 219 Query 180 ATCATTGACTTAGGTCGCCTATACACAGACGACCTAACTCTACAAGCCAAAACGCTTGAT 239 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 220 ATCATTGACTTAGGTCGCCTATACACGGACGACCTAACTCTACAAGCCAAAACGCTTGAT 279 Query 240 GAGATCTCAAAGGCTTGTAGAGAATGGGGATTTTTCCAAGTTGTGAACCATGGGATGAGT 299 || |||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||| Sbjct 280 GAAATCTCAAAGGCTTGTAGAGAATTGGGATTTTTCCAAGTGGTGAACCACGGGATGAGT 339 Query 300 CCTCAACTCATGGACCAAGCTAAAGCAACATGGAGAGAATTCTTTCATCTTCCCATGGAT 359 ||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 340 CCTCAGCTCATGGACCAAGCTAAAGCAACATGGAGAGAATTCTTTAATCTCCCCATGGAA 399 Query 360 CTCAAAAATATGCATGCTAATTCGCCGAAAACTTACGAGGGATATGGAAGCCGACTAGGC 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 400 CTCAAAAATATGCATGCTAATTCGCCGAAAACTTACGAGGGATATGGAAGCCGACTAGGC 459 Query 420 GTAGAAAAGGGTGCTATTCTTGATTGGAGCGACTACTATTATCTTCATTACCAACCTTCG 479 |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 460 GTAGAAAAGGGTGCTATTCTTGATTGGAGCGACTACTATTATCTCCATTACCAGCCTTCG 519 Query 480 TCTTTGAAGGATTACACCAAGTGGCCTTCCTTGCCTCTTCATTGCCGAGAAATATTGGAG 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 520 TCTTTGAAGGATTACACCAAGTGGCCTTCCTTGCCTCTTCATTGCCGAGAAATATTGGAG 579 Query 540 GATTATTGCAAGGAAATGGTGAAACTATGCGAGAAGTTAATGAAGATACT-ATCGAAAAA 598 ||||||||||||||||||||||||||||||||||| || ||||| || || ||| ||||| Sbjct 580 GATTATTGCAAGGAAATGGTGAAACTATGCGAGAACTTGATGAAAAT-CTTATCCAAAAA 638 Query 599 CTTGGGATTACAAGAAGACAGACTTCAAAATGCGTTTGGTGGTAAAGAGGAATCAGGAGG 658 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 639 CTTGGGATTACAAGAAGACAGACTTCAAAATGCATTTGGTGGTAAAGAGGAATCAGGTGG 698 Query 659 TTGTTTAAGGGTTAATTATTACCCAAAATGCCCTCAGCCGGAGCTGACTCTTGGCATCTC 718 ||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| Sbjct 699 ATGTTTAAGGGTTAATTATTACCCAAAATGCCCTCAACCGGAGCTGACTCTCGGTATCTC 758 Query 719 TCCGCACTCCGATCCCGGTGGATTAACCATTCTCTTGCCGGACGAACAAGTCGCCGGTCT 778 ||||||||| |||||||| || || |||||||||||||||||||||||||||||| |||| Sbjct 759 TCCGCACTCTGATCCCGGCGGTTTGACCATTCTCTTGCCGGACGAACAAGTCGCCAGTCT 818 Query 779 TCAGGTCCGTGGATCCGACGACGCTTGGATCACAGTCGAACCAGCTCCTCATGCTTTCAT 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 819 TCAGGTCCGTGGATCCGACGACGCTTGGATCACAGTCGAACCAGCTCCTCATGCTTTCAT 878 Query 839 CGTTAACATTGGTGACCAAATTCAGATGCTGAGCAATTCAATATACAAAAGCGTAGAACA 898 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 879 CGTTAACATGGGTGACCAAATTCAGATGCTGAGCAATTCAATATACAAAAGCGTAGAACA 938 Query 899 CAGAGTGATCGTGAGCCCTGCAAATGAGAGGCTATCTTTGGCATTCTTCTACAACCCAAA 958 |||||||||||||| ||||| |||||||||| | || |||||||| |||||||||||||| Sbjct 939 CAGAGTGATCGTGAACCCTGAAAATGAGAGGTTGTCATTGGCATTTTTCTACAACCCAAA 998 Query 959 GGGCAATGTTCCGATTGAGCCATTGAAGGAGATAGTGACCGTAGATTCACCTGCTCTCTA 1018 |||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 999 GGGCAATGTTCCTATCGAGCCATTGAAGGAGCTAGTGACCGTAGATTCACCTGCTCTCTA 1058 Query 1019 CTCCTCCACCACATACGATCGTTACCGTCAATTCATTCGTACGCAAGGCCCACGTAGCAA 1078 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1059 CTCCTCCACCACATACGATCGTTACCGTCAATTCATTCGTACGCAAGGCCCACGTAGCAA 1118 Query 1079 ATGTCATATCGACGAACTTAAATCCCCTCGATAGTGCGTACTTTTTATTTG 1129 ||||||||| ||||||||||||||||||||||||||||||| ||| ||||| Sbjct 1119 ATGTCATATTGACGAACTTAAATCCCCTCGATAGTGCGTACATTTGATTTG 1169 > AT5G05600.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:1672120-1674739 FORWARD LENGTH=1399 Length=1399 Score = 244 bits (132), Expect = 1e-63 Identities = 461/611 (75%), Gaps = 58/611 (9%) Strand=Plus/Plus Query 389 AACTTACGAGGGATATGGAAGCCGACTAGGCGTAGA-AAAGGGTGCTATTCTTGATTGGA 447 ||| ||||| || |||||||| ||||||| || || ||| || || | ||||||||||| Sbjct 545 AACCTACGAAGGCTATGGAAGTAGACTAGGTGTTGAGAAA-GGAGCAAGTCTTGATTGGA 603 Query 448 GCGACTACTA-TTATCTTCAT-TACCAACCTTCGTC-TTTGAAGGA-TTACACCAAGTGG 503 | || || || || ||| ||| | | || || || |||||| || || || ||||||| Sbjct 604 GTGATTATTACTT-TCTCCATCT-TCTTCC-TCATCATTTGAAAGACTT-CAACAAGTGG 659 Query 504 CCTTCCTTGCCT--CTTCATTGCCGAGAAAT-ATTGGAGGATTATTGC-AAGGAAATGGT 559 ||||| || ||| | || | ||||| | | | || || || || || || | || Sbjct 660 CCTTCTTTTCCTCCCACCA-T-AAGAGAAGTGA-TCGATGAATACGGCGAA-GAGCTAGT 715 Query 560 GAAACT-A-TGCGAGAAGTTAATGAAGATACTATCGAAAAACTTGGGATTACAAGAAGA- 616 ||| || | || ||||| || |||| | || |||||| |||||||||| || |||| || Sbjct 716 GAAGCTAAGTGGGAGAA-TT-ATGAGGGTATTATCGACAAACTTGGGACTAAAAGAGGAT 773 Query 617 CAGACTTCAA-AATGCGTTTGGTGGT-AAAGAGGAATCAGGAGG-TTGTTTAAGGGTTAA 673 || ||||| || || ||||| ||| ||| | || || || ||||| |||||||| Sbjct 774 AAG-TTTCAAGAA-GCATTTGGAGGTGAAA-A--CAT-TGG-GGCGTGTTTGAGGGTTAA 826 Query 674 TTATTACCCAAAATGCCCTC-AGCCGGAGCTGACTCTTGG-CATCTCTCCGCACTCCGAT 731 |||||||||||||||||||| | ||||||||| ||||||| | ||||||| ||||||||| Sbjct 827 TTATTACCCAAAATGCCCTCGA-CCGGAGCTGGCTCTTGGTC-TCTCTCCACACTCCGAT 884 Query 732 CCCGGTGG-ATTAACCATTCTCTTGCCGGACGAACAAGTCGCCGGTCTTCAGGTCCGTG- 789 || || || || | |||||||||| |||||||| |||||| |||||| ||||| ||| Sbjct 885 CCTGGCGGTATGA-CCATTCTCTTACCGGACGATCAAGTCTTCGGTCTCCAGGTTCGTAA 943 Query 790 -GATCCGACGACGCTTGGATCACAGTCGAA-CCAGC-TCCTCATGCTTTCATCGTTAACA 846 ||| ||| ||| | ||||||| ||| || || | ||| |||||||||||||| || | Sbjct 944 AGAT--GAC-ACG-T-GGATCACCGTC-AAGCCT-CATCCCCATGCTTTCATCGTCAATA 996 Query 847 TTGGTGACCAAATTCAGATGCTGAGCAATTCAATATACAAAAGCGTAGAACACAGAGTGA 906 ||||||| ||||| ||||| || ||||| |||| |||||| || || || || ||||||| Sbjct 997 TTGGTGATCAAATACAGATACTAAGCAACTCAACATACAAGAGTGTGGAGCATAGAGTGA 1056 Query 907 TCGTGAGCCCTG-CAAATGAGAG-GCTATCT-TTGGCATTCTTCTACAACCC-AAAGGGC 962 | |||| | | | ||| ||||| | | || ||| | ||||||||||| || ||| | | Sbjct 1057 TAGTGAACTCGGACAAG-GAGAGAGTT-TCACTTGCC-TTCTTCTACAATCCTAAAAG-C 1112 Query 963 AATGTTCCGAT 973 || ||||||| Sbjct 1113 GATATTCCGAT 1123 > AT3G51238.1 | Symbols: | other RNA | chr3:19025110-19026779 REVERSE LENGTH=1670 Length=1670 Score = 54.7 bits (29), Expect = 2e-06 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 669 GTTAATTATTACCCAAAATGCCCTCAGCC 697 ||||||||||||||||||||||||||||| Sbjct 687 GTTAATTATTACCCAAAATGCCCTCAGCC 659 > AT3G51240.1 | Symbols: F3H, TT6, F3'H | flavanone 3-hydroxylase | chr3:19025192-19026872 FORWARD LENGTH=1508 Length=1508 Score = 54.7 bits (29), Expect = 2e-06 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 669 GTTAATTATTACCCAAAATGCCCTCAGCC 697 ||||||||||||||||||||||||||||| Sbjct 812 GTTAATTATTACCCAAAATGCCCTCAGCC 840 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55521802770 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5