BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938544
Length=1132
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55970.1 | Symbols: ATJRG21, JRG21 | jasmonate-regulated gen... 1836 0.0
AT5G05600.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 244 1e-63
AT3G51238.1 | Symbols: | other RNA | chr3:19025110-19026779 RE... 54.7 2e-06
AT3G51240.1 | Symbols: F3H, TT6, F3'H | flavanone 3-hydroxylase... 54.7 2e-06
> AT3G55970.1 | Symbols: ATJRG21, JRG21 | jasmonate-regulated gene
21 | chr3:20766735-20769324 REVERSE LENGTH=1387
Length=1387
Score = 1836 bits (994), Expect = 0.0
Identities = 1086/1131 (96%), Gaps = 3/1131 (0%)
Strand=Plus/Plus
Query 1 CTTTT-AAAGTAACCAAAGCCATGAATATCTTCCAAGACTGGCCTGAGCCTATAGTCCGT 59
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 40 CTTTTAAAAGTAACCAACGCCATGAATATCTTCCAAGACTGGCCTGAGCCTATAGTCCGT 99
Query 60 GTCCAATCCTTATCTGAAAGCAACCTCGGAGCCATACCAAATCGCTACGTCAAGCCTCTA 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 100 GTCCAATCCTTATCTGAAAGCAACCTCGGAGCCATACCAAATCGCTACGTCAAGCCTCTA 159
Query 120 TCTCAGCGTCCAAACATAACCACTCACAACAAACACAACCCTCACACCACCACCATCCCC 179
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 160 TCTCAGCGTCCAAACATAACCCCTCACAACAAACACAACCCTCAGACCACCACCATCCCC 219
Query 180 ATCATTGACTTAGGTCGCCTATACACAGACGACCTAACTCTACAAGCCAAAACGCTTGAT 239
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 220 ATCATTGACTTAGGTCGCCTATACACGGACGACCTAACTCTACAAGCCAAAACGCTTGAT 279
Query 240 GAGATCTCAAAGGCTTGTAGAGAATGGGGATTTTTCCAAGTTGTGAACCATGGGATGAGT 299
|| |||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||
Sbjct 280 GAAATCTCAAAGGCTTGTAGAGAATTGGGATTTTTCCAAGTGGTGAACCACGGGATGAGT 339
Query 300 CCTCAACTCATGGACCAAGCTAAAGCAACATGGAGAGAATTCTTTCATCTTCCCATGGAT 359
||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 340 CCTCAGCTCATGGACCAAGCTAAAGCAACATGGAGAGAATTCTTTAATCTCCCCATGGAA 399
Query 360 CTCAAAAATATGCATGCTAATTCGCCGAAAACTTACGAGGGATATGGAAGCCGACTAGGC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 CTCAAAAATATGCATGCTAATTCGCCGAAAACTTACGAGGGATATGGAAGCCGACTAGGC 459
Query 420 GTAGAAAAGGGTGCTATTCTTGATTGGAGCGACTACTATTATCTTCATTACCAACCTTCG 479
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 460 GTAGAAAAGGGTGCTATTCTTGATTGGAGCGACTACTATTATCTCCATTACCAGCCTTCG 519
Query 480 TCTTTGAAGGATTACACCAAGTGGCCTTCCTTGCCTCTTCATTGCCGAGAAATATTGGAG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 TCTTTGAAGGATTACACCAAGTGGCCTTCCTTGCCTCTTCATTGCCGAGAAATATTGGAG 579
Query 540 GATTATTGCAAGGAAATGGTGAAACTATGCGAGAAGTTAATGAAGATACT-ATCGAAAAA 598
||||||||||||||||||||||||||||||||||| || ||||| || || ||| |||||
Sbjct 580 GATTATTGCAAGGAAATGGTGAAACTATGCGAGAACTTGATGAAAAT-CTTATCCAAAAA 638
Query 599 CTTGGGATTACAAGAAGACAGACTTCAAAATGCGTTTGGTGGTAAAGAGGAATCAGGAGG 658
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 639 CTTGGGATTACAAGAAGACAGACTTCAAAATGCATTTGGTGGTAAAGAGGAATCAGGTGG 698
Query 659 TTGTTTAAGGGTTAATTATTACCCAAAATGCCCTCAGCCGGAGCTGACTCTTGGCATCTC 718
||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 699 ATGTTTAAGGGTTAATTATTACCCAAAATGCCCTCAACCGGAGCTGACTCTCGGTATCTC 758
Query 719 TCCGCACTCCGATCCCGGTGGATTAACCATTCTCTTGCCGGACGAACAAGTCGCCGGTCT 778
||||||||| |||||||| || || |||||||||||||||||||||||||||||| ||||
Sbjct 759 TCCGCACTCTGATCCCGGCGGTTTGACCATTCTCTTGCCGGACGAACAAGTCGCCAGTCT 818
Query 779 TCAGGTCCGTGGATCCGACGACGCTTGGATCACAGTCGAACCAGCTCCTCATGCTTTCAT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 TCAGGTCCGTGGATCCGACGACGCTTGGATCACAGTCGAACCAGCTCCTCATGCTTTCAT 878
Query 839 CGTTAACATTGGTGACCAAATTCAGATGCTGAGCAATTCAATATACAAAAGCGTAGAACA 898
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 CGTTAACATGGGTGACCAAATTCAGATGCTGAGCAATTCAATATACAAAAGCGTAGAACA 938
Query 899 CAGAGTGATCGTGAGCCCTGCAAATGAGAGGCTATCTTTGGCATTCTTCTACAACCCAAA 958
|||||||||||||| ||||| |||||||||| | || |||||||| ||||||||||||||
Sbjct 939 CAGAGTGATCGTGAACCCTGAAAATGAGAGGTTGTCATTGGCATTTTTCTACAACCCAAA 998
Query 959 GGGCAATGTTCCGATTGAGCCATTGAAGGAGATAGTGACCGTAGATTCACCTGCTCTCTA 1018
|||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 999 GGGCAATGTTCCTATCGAGCCATTGAAGGAGCTAGTGACCGTAGATTCACCTGCTCTCTA 1058
Query 1019 CTCCTCCACCACATACGATCGTTACCGTCAATTCATTCGTACGCAAGGCCCACGTAGCAA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 CTCCTCCACCACATACGATCGTTACCGTCAATTCATTCGTACGCAAGGCCCACGTAGCAA 1118
Query 1079 ATGTCATATCGACGAACTTAAATCCCCTCGATAGTGCGTACTTTTTATTTG 1129
||||||||| ||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1119 ATGTCATATTGACGAACTTAAATCCCCTCGATAGTGCGTACATTTGATTTG 1169
> AT5G05600.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr5:1672120-1674739
FORWARD LENGTH=1399
Length=1399
Score = 244 bits (132), Expect = 1e-63
Identities = 461/611 (75%), Gaps = 58/611 (9%)
Strand=Plus/Plus
Query 389 AACTTACGAGGGATATGGAAGCCGACTAGGCGTAGA-AAAGGGTGCTATTCTTGATTGGA 447
||| ||||| || |||||||| ||||||| || || ||| || || | |||||||||||
Sbjct 545 AACCTACGAAGGCTATGGAAGTAGACTAGGTGTTGAGAAA-GGAGCAAGTCTTGATTGGA 603
Query 448 GCGACTACTA-TTATCTTCAT-TACCAACCTTCGTC-TTTGAAGGA-TTACACCAAGTGG 503
| || || || || ||| ||| | | || || || |||||| || || || |||||||
Sbjct 604 GTGATTATTACTT-TCTCCATCT-TCTTCC-TCATCATTTGAAAGACTT-CAACAAGTGG 659
Query 504 CCTTCCTTGCCT--CTTCATTGCCGAGAAAT-ATTGGAGGATTATTGC-AAGGAAATGGT 559
||||| || ||| | || | ||||| | | | || || || || || || | ||
Sbjct 660 CCTTCTTTTCCTCCCACCA-T-AAGAGAAGTGA-TCGATGAATACGGCGAA-GAGCTAGT 715
Query 560 GAAACT-A-TGCGAGAAGTTAATGAAGATACTATCGAAAAACTTGGGATTACAAGAAGA- 616
||| || | || ||||| || |||| | || |||||| |||||||||| || |||| ||
Sbjct 716 GAAGCTAAGTGGGAGAA-TT-ATGAGGGTATTATCGACAAACTTGGGACTAAAAGAGGAT 773
Query 617 CAGACTTCAA-AATGCGTTTGGTGGT-AAAGAGGAATCAGGAGG-TTGTTTAAGGGTTAA 673
|| ||||| || || ||||| ||| ||| | || || || ||||| ||||||||
Sbjct 774 AAG-TTTCAAGAA-GCATTTGGAGGTGAAA-A--CAT-TGG-GGCGTGTTTGAGGGTTAA 826
Query 674 TTATTACCCAAAATGCCCTC-AGCCGGAGCTGACTCTTGG-CATCTCTCCGCACTCCGAT 731
|||||||||||||||||||| | ||||||||| ||||||| | ||||||| |||||||||
Sbjct 827 TTATTACCCAAAATGCCCTCGA-CCGGAGCTGGCTCTTGGTC-TCTCTCCACACTCCGAT 884
Query 732 CCCGGTGG-ATTAACCATTCTCTTGCCGGACGAACAAGTCGCCGGTCTTCAGGTCCGTG- 789
|| || || || | |||||||||| |||||||| |||||| |||||| ||||| |||
Sbjct 885 CCTGGCGGTATGA-CCATTCTCTTACCGGACGATCAAGTCTTCGGTCTCCAGGTTCGTAA 943
Query 790 -GATCCGACGACGCTTGGATCACAGTCGAA-CCAGC-TCCTCATGCTTTCATCGTTAACA 846
||| ||| ||| | ||||||| ||| || || | ||| |||||||||||||| || |
Sbjct 944 AGAT--GAC-ACG-T-GGATCACCGTC-AAGCCT-CATCCCCATGCTTTCATCGTCAATA 996
Query 847 TTGGTGACCAAATTCAGATGCTGAGCAATTCAATATACAAAAGCGTAGAACACAGAGTGA 906
||||||| ||||| ||||| || ||||| |||| |||||| || || || || |||||||
Sbjct 997 TTGGTGATCAAATACAGATACTAAGCAACTCAACATACAAGAGTGTGGAGCATAGAGTGA 1056
Query 907 TCGTGAGCCCTG-CAAATGAGAG-GCTATCT-TTGGCATTCTTCTACAACCC-AAAGGGC 962
| |||| | | | ||| ||||| | | || ||| | ||||||||||| || ||| | |
Sbjct 1057 TAGTGAACTCGGACAAG-GAGAGAGTT-TCACTTGCC-TTCTTCTACAATCCTAAAAG-C 1112
Query 963 AATGTTCCGAT 973
|| |||||||
Sbjct 1113 GATATTCCGAT 1123
> AT3G51238.1 | Symbols: | other RNA | chr3:19025110-19026779
REVERSE LENGTH=1670
Length=1670
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Minus
Query 669 GTTAATTATTACCCAAAATGCCCTCAGCC 697
|||||||||||||||||||||||||||||
Sbjct 687 GTTAATTATTACCCAAAATGCCCTCAGCC 659
> AT3G51240.1 | Symbols: F3H, TT6, F3'H | flavanone 3-hydroxylase
| chr3:19025192-19026872 FORWARD LENGTH=1508
Length=1508
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 669 GTTAATTATTACCCAAAATGCCCTCAGCC 697
|||||||||||||||||||||||||||||
Sbjct 812 GTTAATTATTACCCAAAATGCCCTCAGCC 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55521802770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5