BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938546
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55990.1 | Symbols: ESK1, TBL29 | Plant protein of unknown f... 2488 0.0
AT2G40150.1 | Symbols: TBL28 | TRICHOME BIREFRINGENCE-LIKE 28 |... 857 0.0
> AT3G55990.1 | Symbols: ESK1, TBL29 | Plant protein of unknown
function (DUF828) | chr3:20780315-20783233 FORWARD LENGTH=1861
Length=1861
Score = 2488 bits (1347), Expect = 0.0
Identities = 1459/1512 (96%), Gaps = 11/1512 (1%)
Strand=Plus/Plus
Query 1 TATATTaaaaaaaaaaaCAGATGCAACCTTGGAGAAGAAAATTTCCATTGTTCGAAACAG 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 TATATTAAAAAAACAAACAGATGCAACCTTGGAGAAGAAAATTTCCATTGTTCGAAACAG 135
Query 61 GAGTGACAATGAAACAGAGGAAGAACAGTAATCTCTCAATCTTCGTCGTCA-TCTTCTCT 119
|||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 136 GAGTTACAATGAAACAGAGGAAGAACAGTAATCTCTCAATCTTCGTCGT-AGTCTTCTCT 194
Query 120 GTTTTCCTCTTTGGGATCTTCATGTACAATGAAGACGTCAAATCCATTGCAGAGTTTCCT 179
||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 195 GTTTTCCTCTTCGGGATCTTCATGTACAATGAAGACGTCAAGTCCATCGCAGAGTTTCCT 254
Query 180 TTCTCCACCTCAAAACCTAACGACGTCCACGACG-AGACGACACCGATTACAGAGACT-A 237
|||||||||||||||||| ||||||||||||||| || |||||||||| ||||||| | |
Sbjct 255 TTCTCCACCTCAAAACCTCACGACGTCCACGACGAAG-CGACACCGATCACAGAGA-TCA 312
Query 238 CAACACTACCGGTTCAAGAACCTATCAAGAACTCAGACCCAATTCAGGAATCTG-TTAAA 296
||||||||||||||||||| | ||||||||||||||||||||||||||||| | | |||
Sbjct 313 CAACACTACCGGTTCAAGAGTCGATCAAGAACTCAGACCCAATTCAGGAATC-GATCAAA 371
Query 297 ATCCCAGACTTAGATCAAGATTCAGTTAAAGACGCAGCAGAACCAGTT-AAGGAGGAGGT 355
| | |||||| || |||||||||||||||||||| ||||||||||||| || ||||||||
Sbjct 372 AACGCAGACTCAGTTCAAGATTCAGTTAAAGACGTAGCAGAACCAGTTCAA-GAGGAGGT 430
Query 356 ATCGAAAACAGAGGAAGTGAAAAAGATTGAGCTTTTCGCTGCCACGGAGGATGAAGAAGA 415
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 431 ATCGAAAACAGAGGAAGTTAAAAAGATTGAGCTTTTCGCTGCGACGGAGGATGAAGAAGA 490
Query 416 CGTGGAATTGCCGCCGGAGGAGTGTGATTTGTTCACCGGAGAATGGGTTTTTGATAACGA 475
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 491 CGTGGAATTGCCGCCGGAGGAATGCGATTTGTTCACCGGAGAATGGGTTTTTGATAACGA 550
Query 476 GACGCATCCGTTGTATAAAGAGGATCAGTGTGAGTTCTTGACGGCGCAAGTGACTTGCAT 535
||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 551 GACGCATCCATTGTATAAAGAGGATCAATGTGAGTTCTTGACGGCGCAAGTCACTTGCAT 610
Query 536 GAGAAATGGAAGAAGAGATTCTCTGTATCAGAACTGGAGATGGCAACCAAGAGATTGTTC 595
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 611 GAGAAATGGAAGAAGAGATTCTCTGTATCAGAACTGGAGATGGCAACCTAGAGATTGTTC 670
Query 596 TTTACCAAAGTTCAAAGCGAAATTGCTGTTGGAGAAGCTAAGGAACAAGCGAATGATGTT 655
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 671 TTTACCAAAGTTCAAAGCGAAATTGCTGTTGGAGAAGCTAAGGAACAAGAGAATGATGTT 730
Query 656 CGTTGGAGATTCCCTAAACCGGAACCAATGGGAATCAATGGTTTGTTTGGTTCAATCAGT 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 CGTTGGAGATTCCCTAAACCGGAACCAATGGGAATCAATGGTTTGTTTGGTTCAATCAGT 790
Query 716 GGTTCCTCCCGGTCGAAAAAGCTTGAACAAAACCGGTTCTCTTTCCGTTTTCCGAGTTGA 775
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 791 GGTTCCTCCCGGTCGAAAAAGCTTGAACAAAACCGGTTCTCTCTCCGTCTTCCGAGTCGA 850
Query 776 GGATTATAATGCGACGGTGGAGTTTTATTGGGCACCATTTTTGGTGGAATCAAATTCAGA 835
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 851 GGATTATAATGCGACGGTGGAGTTTTATTGGGCACCATTTTTGGTGGAATCGAATTCAGA 910
Query 836 TGATCCAAATATGCATAGTATACTTAACCGTATAATAATGCCTGAGTCCATTGAAAAGCA 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 TGATCCAAATATGCATAGTATACTTAACCGTATAATAATGCCTGAGTCCATTGAAAAGCA 970
Query 896 TGGAGTCAACTGGAAAGACGTTGACTTCCTTGTTTTCAACACTTACATTTGGTGGATGAA 955
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 971 TGGAGTCAACTGGAAAGGCGTTGACTTTCTTGTTTTCAACACTTACATTTGGTGGATGAA 1030
Query 956 CACATTCGCTATGAAAGTCCTACGCGGATCGTTCGATAAAGGGGACACCGAGTATGAGGA 1015
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1031 CACATTCGCTATGAAAGTCCTACGAGGATCGTTCGATAAAGGAGACACCGAGTATGAGGA 1090
Query 1016 GATCGAACGGCCAGTAGCTTATAGGAGAGTGATGAGGACTTGGGGAGATTGGGTGGAACG 1075
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 GATCGAACGGCCAGTAGCGTATAGGAGAGTGATGAGGACTTGGGGAGATTGGGTGGAACG 1150
Query 1076 AAATATTGATCCTCTGCGTACCACTGTTTTCTTTGCTAGCATGTCTCCTCTTCACATCAA 1135
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1151 AAATATTGATCCTCTACGTACCACTGTCTTCTTTGCTAGCATGTCTCCTCTTCACATCAA 1210
Query 1136 GAGCTTGGATTGGGAGAATCCAGATGGGATAAAGTGTGCATTAGAGACGACACCAATCCT 1195
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1211 GAGCTTGGATTGGGAGAATCCAGATGGGATCAAGTGTGCATTAGAGACGACACCAATCCT 1270
Query 1196 AAACATGTCAATGCCATTCAGCGTAGGAACAGACTACAGGCTGTTTTCAGTAGCGGAAAA 1255
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1271 AAACATGTCAATGCCATTCAGCGTAGGAACAGACTACAGACTGTTTTCAGTAGCGGAAAA 1330
Query 1256 CGTCACGCATTCTCTTAAAGTTCCGGTTTACTTTCTCAACATTACCAAACTCTCCGAATA 1315
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 CGTCACGCATTCTCTTAATGTTCCGGTTTACTTTCTCAACATTACCAAACTCTCCGAATA 1390
Query 1316 CCGGAAAGATGCTCACACTTCGGTTCACACAATCCGGCAAGGCAAAATGCTGACGCCGGA 1375
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1391 CCGGAAAGATGCTCACACTTCGGTTCACACAATCCGACAAGGCAAAATGCTGACGCCGGA 1450
Query 1376 GCAACAAGCCGATCCCAACACTTACGCCGATTGTATCCATTGGTGTCTTCCCGGTTTACC 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 GCAACAAGCCGATCCCAACACTTACGCCGATTGTATCCATTGGTGTCTTCCCGGTTTACC 1510
Query 1436 TGACACGTGGAATGAGTTCCTTTACACACGTATCATTTCTCGTTCGTGACCTaaaaaa-a 1494
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
Sbjct 1511 TGACACGTGGAATGAGTTCCTTTACACACGTATCATTTCCCGTTCGTGACCTACAAAATA 1570
Query 1495 TTTGAAATATCT 1506
||||||||||||
Sbjct 1571 TTTGAAATATCT 1582
> AT2G40150.1 | Symbols: TBL28 | TRICHOME BIREFRINGENCE-LIKE 28
| chr2:16775442-16777243 FORWARD LENGTH=1446
Length=1446
Score = 857 bits (464), Expect = 0.0
Identities = 892/1094 (82%), Gaps = 48/1094 (4%)
Strand=Plus/Plus
Query 417 GTGGAATTGCCGCCGGAGGAGTGTGATTTGTTCACCGGAGAATGGGTTTTTGATAACGAG 476
||||| ||||||||||| ||||||||| |||||||||| |||||||||| || ||| ||
Sbjct 259 GTGGAGTTGCCGCCGGATGAGTGTGATCTGTTCACCGGTCAATGGGTTTTCGACAACAAG 318
Query 477 ACGCATCCGTTGTATAAAGAGGATCAGTGTGAGTTCTTGACGGCGCAAGTGACTTGCATG 536
|| |||| ||||||||||| || |||||||||||||||||| |||||||||||| |
Sbjct 319 ACATATCCATTGTATAAAGAAGAAGAGTGTGAGTTCTTGACGGAGCAAGTGACTTGTTTA 378
Query 537 AGAAATGGAA-GAAGAGATTCTCTGTATCAGAACTGGAGATGGCAACCAAGAGATTGTTC 595
||||| |||| ||| ||||||| ||| |||||| |||||||||||||| ||||| |||||
Sbjct 379 AGAAACGGAAGGAA-AGATTCTTTGTTTCAGAATTGGAGATGGCAACCTAGAGACTGTTC 437
Query 596 TTTACCAAAGTTCAAAGCGAA-ATTGCTGTTGGAGAAGCTAAGGAACAAGCGAATGATGT 654
||||||||| ||||| || || | || |||| |||||||| ||||||||| || ||||||
Sbjct 438 TTTACCAAAATTCAATGC-AAGAGTGTTGTTAGAGAAGCTGAGGAACAAGAGATTGATGT 496
Query 655 TCGTTGGAGATTCCCTAAACCGGAACCAATGGGAATCAATGGTTTGTTTGGTTCAATCAG 714
| || || || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 TTGTCGGTGACTCGTTAAACCGGAACCAATGGGAATCAATGGTTTGTTTGGTTCAATCAG 556
Query 715 TGGTTCCTCCCGGTCGAAAAAGCTTGAACAAAACCGGTTCTCTTTCCGTTTTCCGAGTTG 774
|| ||||||||||| |||||||||| ||| | |||||||| || | |||||| | |
Sbjct 557 TGATTCCTCCCGGTAGAAAAAGCTTAAACCAGACCGGTTCACTCACTGTTTTCAAAATCC 616
Query 775 AGGATTATAATGCGACGGTGGAGTTTTATTGGGCACCATTTTTGGTGGAATCAAATTCAG 834
|||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 617 AGGACTATAACGCGACGGTGGAGTTTTATTGGGCGCCATTTTTGGTGGAATCAAATTCAG 676
Query 835 ATGATCC--AAATATGCATAGTATACTTAACCGTATAATAATGCCTGAGTCCATTGAAAA 892
| ||||| ||| | ||| |||||| | |||||||||||||||| |||||||| || ||
Sbjct 677 ACGATCCGGAAA-A-GCACAGTATAATCGACCGTATAATAATGCCAGAGTCCATCGAGAA 734
Query 893 GCATGGAGTCAACTGGAAAGACGTTGACTTCCTTGTTTTCAACACTTACATTTGGTGGAT 952
||||||||||||||||| || ||||||||| ||||| ||||| | |||||| ||||||||
Sbjct 735 GCATGGAGTCAACTGGATAGGCGTTGACTTTCTTGTCTTCAATAGTTACATCTGGTGGAT 794
Query 953 GAACACAT-TCGCTATGAAAGTCCTACGCGGATCGTTCGATAAAGGGGACACCGAGTATG 1011
||| || | || | || ||||||||||| |||||||||||| | |||||||| |||||||
Sbjct 795 GAATAC-TGTCTCCATCAAAGTCCTACGTGGATCGTTCGATGATGGGGACACAGAGTATG 853
Query 1012 AGGAGATCGAACGGCCAGTAGCTTAT-AGGAGAGTGATGAGGAC-TTGGGGAGATTGGGT 1069
| |||||| |||||||| |||| || || || ||| ||||||| ||||| |||||||||
Sbjct 854 ATGAGATCAAACGGCCAATAGCGTACGAG-AGGGTGTTGAGGACATTGGG-AGATTGGGT 911
Query 1070 GGAACGA-AATATTGATCCTCTGCGTACCACTGTTTTCTT--TGCTAGCATGTCTCCTCT 1126
||| | | || ||||||||||| |||| ||||||||||| || ||||||||||||||
Sbjct 912 GGACC-ATAACATTGATCCTCTAAGTACAACTGTTTTCTTCATG--AGCATGTCTCCTCT 968
Query 1127 TCACATCAAGAGCTTGGATTGGGAGAATCCAGATGGG-ATAAAGTGTGCATTAGAGACGA 1185
|||||||||||||| ||||||| ||||| || ||| |||| |||||| |||||||| |
Sbjct 969 TCACATCAAGAGCTCAGATTGGGCTAATCCTGA-GGGTATAAGGTGTGCTTTAGAGACAA 1027
Query 1186 CACCAATCCTAAACATGTC----AA--TG-C---C----A-TT--CAGCG-TAGGAACAG 1227
|||| ||| | |||||||| || || | | | || | ||| | || || |
Sbjct 1028 CACCGATCTTGAACATGTCTTTCAACGTGGCTTACGGGCAGTTTTCCGCGGTGGGGACGG 1087
Query 1228 ACTACAGGCTGTTTTCAGTAGCGGAAAACGTCACGCATTCTCTTAAAGTTCCGGTTTACT 1287
| |||||||||||| | || ||||||||||| || || ||||| |||||||| || | |
Sbjct 1088 ATTACAGGCTGTTTCCGGTGGCGGAAAACGTTACACAGTCTCTAAAAGTTCCTATTCA-T 1146
Query 1288 TTC-TCAACATTACCAAACTCTCCGAATACCGGAAAGATGCTCACACTTCGGTTCACACA 1346
||| |||||||||| | | || || || || |||||||| || ||||||||| ||||
Sbjct 1147 TTCCTCAACATTACTGCATTGTCTGAGTATCGTAAAGATGCACATACTTCGGTTTACACG 1206
Query 1347 ATCCGGCAAGGCAAAATGCTGACGCCGGAGCAACAAGCCGATCCCAAC-ACTTACGCCGA 1405
||| ||||||||| ||||||||| |||||| ||| |||||| | | | || || ||
Sbjct 1207 ATCAAGCAAGGCAAGTTGCTGACGCGGGAGCAGCAAAACGATCC-AGCCAATTTTGCTGA 1265
Query 1406 TTGTATCCATTGGTGTCTTCCC-GGT-TTACCTGACACGTGGAATGAGTTCCTTTACACA 1463
||| || || ||||| ||| || || || ||||| || ||||||||||| || || |||
Sbjct 1266 TTGCATACACTGGTG-CTTACCAGGCCTT-CCTGATACATGGAATGAGTTTCTCTATACA 1323
Query 1464 CGTATCATTTCTCG 1477
| ||| ||||||||
Sbjct 1324 CATATTATTTCTCG 1337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74296806600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5