BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938547
Length=1628
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56000.1 | Symbols: ATCSLA14, CSLA14 | cellulose synthase li... 2440 0.0
> AT3G56000.1 | Symbols: ATCSLA14, CSLA14 | cellulose synthase
like A14 | chr3:20783318-20785796 REVERSE LENGTH=1864
Length=1864
Score = 2440 bits (1321), Expect = 0.0
Identities = 1515/1609 (94%), Gaps = 11/1609 (1%)
Strand=Plus/Plus
Query 1 GTGGGGTCAAAAG-TATCTGTAATGGCGACATTGTCTGATGGATTATTCAACGACATGGA 59
||||||||||||| |||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 91 GTGGGGTCAAAAGTTATCTGTAATGGCGACATTGTCTGATGGATTATTTGATGACAT-GA 149
Query 60 -TGTGTTGGGAGTGATCGGATATGTACTGGAGCAAACCAGGTTCATCTTCCTCGTACCGA 118
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 150 GCGTGTTGGGAGTGATCGGATATGTACTTGAGCAAACCAGGTTCATCTTTCTCGTGCCGA 209
Query 119 TTCTGAAACGTCTTGTGAATCTATGTCAGGTTATTTCGGTGTTGTTGTTCATAGATGCAG 178
|||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||
Sbjct 210 TTCTGAAACGTCTTGTGAATCTCTGTCAGGTTGTTTCGGTGTTGTTGTTCGTAGATGCAG 269
Query 179 CTTATATGGCTATAGTTGTAGCCATTGTCAAATTACGTGGACGAACACCAGAGAAAGTTC 238
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 270 CTTATATGGCTATAGTTGTAGCCATTGTCAAATTACTTGGACGAACACCACAGAAAGTTC 329
Query 239 TCAAATGGGAAAGCTTTAAGAATGATGATATCGAGCTTGCTCCTTCCAGTAATCATCCAA 298
|||||||||||||||| |||| |||||||||||||| ||||| ||||| |||||||| |
Sbjct 330 TCAAATGGGAAAGCTTCAAGAGCGATGATATCGAGCTAGCTCCCTCCAGCAATCATCCCA 389
Query 299 TGGTTCTCATTCAAATCCCAATCTAT-AACGAGAAAGAGGTATGCCAACTTTCTATAGGA 357
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 390 TGGTTCTCATTCAAATCCCAATCT-TCAACGAGAAAGAGGTATGCCAACTTTCTATAGGA 448
Query 358 GCGGTTTGCAAGCTATCATGGCCACTGGATCGGATGATCATTCAAGTTCTCGACGATTCG 417
|| | ||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 449 GCAGCTTGTAAGCTATCATGGCCACTGGATCGGATGATCATTCAAGTGCTTGACGATTCA 508
Query 418 ACCGAAGAAGAAAGTCAGAAACTAGTTAGATTGGAGTGTAAGAAATGGGAGAGCGAAGGT 477
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 509 ACCGAAGAAGAAAGTCAGAAACTGGTGAGATTGGAGTGTAAGAAATGGGAGAGCGAAGGT 568
Query 478 ATAACCATAAAGTCGGAGGTTAGAGGCGG---TAGAGACGGTTTCAAAGCAGGAGCTCTC 534
||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||
Sbjct 569 ATAACCATAAAGTCGGAAGTTAGAGGCGGTTTTAGAGAGGGTTTCAAAGCAGGAGCTCTC 628
Query 535 ACTGCAGGAATGAAGCATGGTTATGTGGATGAATACAAGTGCGAGTTTGTTGTTATATTT 594
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 629 ACTGCAGGAATGAAGCATAGTTACGTGGATGAATACAAGTGCGAGTTTGTTGTTATATTT 688
Query 595 GATGCTGATTTTCAGCCTGAACCAGATTTTCTTGAACGTACTATTCCTTTTCTTGTCCAC 654
||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct 689 GATGCTGATTTTCAGCCTGAACCTGATTTTCTTGAACGTACTGTTCCTTTCCTTGTCCAT 748
Query 655 AACCCTGAGATAGCTCTTGTACAAGCCGGTTGGAAATACGGGAATGCCGATGAGTGTTGT 714
||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 749 AACCCTGAGATAGCTCTTGTACAAGCCGGCTGGAAATATGGGAATGCTGATGAGTGTTGT 808
Query 715 ATGACAAGAATACAAGAGATGTCTCTTAATTACCATTTTGCAGTGGAGCAAAAGTCTGGA 774
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 809 ATGACAAGAATACAAGAGATGTCTCTTAACTACCATTTTGCAGTGGAGCAAAAGTCTGGA 868
Query 775 TCCTCCATACTTGGTTTCTTTGGATTCAATGGTACTGCTGGTGTGTGGAGAATTAAAGCT 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 TCCTCCATACTTGGTTTCTTTGGATTCAATGGTACTGCTGGTGTGTGGAGAATTAAAGCT 928
Query 835 CTGAATGAGGCCGGAGGATGGAAGGACCGCACAATTGTCGAGGACATGGATTTAGCAGTT 894
|||||||||| | ||||||||| |||||||| || |||||||||||||||||||| |||
Sbjct 929 TTGAATGAGGCTGAAGGATGGAAAGACCGCACGATAGTCGAGGACATGGATTTAGCTGTT 988
Query 895 AGAGCTTATTTACGCGGCTCGAAGTTTGTGTATGTCGACGATGTTAAGGTGAAAAACGAG 954
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 AGAGCTTATCTACGCGGCTCGAAGTTTGTGTATGTCGACGATGTTAAGGTGAAAAACGAG 1048
Query 955 CTTCCAAGCTCATTTCAAGCATACCGGTATCAGCAACATCGTTGGTCTTGCGGTCCAGCG 1014
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1049 CTTCCGAGCTCATTTCAAGCATACCGGTTTCAGCAACATCGTTGGTCTTGCGGTCCAGCG 1108
Query 1015 AACCTCTTCAAGAAAATTGCAATGGAGATCATTAAAAACCAGAATGTGTCTTTATGGAAG 1074
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1109 AACCTTTTCAAGAAAATTGCAATGGAGATCATCAAAAACCAGAATGTGTCTTTATGGAAG 1168
Query 1075 AAGGCGTATTTGATATACAACTTCTTCTTTTTGAGGAAGATTGTTGTACACATCTTCACA 1134
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 AAGGTGTATTTGATATACAACTTCTTCTTTTTGAGGAAGATTGTTGTACACATCTTCACA 1228
Query 1135 TTCGTCTTCTACTGCCTGCTTTTGCCTGCTACCGTTATATTCCCGGAGATCGAAGTCCCT 1194
||||| ||||||||| || ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1229 TTCGTTTTCTACTGCGTGATTTTGCCAGCTACCGTTATATTCCCGGAGATCGAAGTCCCT 1288
Query 1195 AAATGGACAACTATCTACATTCCTGCTACCATCACTATCTTAAACGCTATTGCAACACCT 1254
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1289 AAATGGACAACTATCTACATTCCAGCTACCATCACTATCCTAAACGCTATTGCAACACCT 1348
Query 1255 AAATCATTTTATCTCATACTATATTGGATCTTATTTGAGAACGTAATGGCGATGCATAGG 1314
||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1349 AAATCATTTTACCTCATACTCTATTGGATCTTATTTGAAAACGTAATGGCGATGCATAGG 1408
Query 1315 AGTAAAGGAACTCTTATTGGACTGCTAGAGACTAGTAGAGTTAAAGAATGGGTTGTTACA 1374
|||| ||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1409 AGTATAGGAACTCTCATTGGATTGCTAGAGACTAGTAGAGTTAAAGAATGGATTGTTACA 1468
Query 1375 CAAAAACTAGGAGAGAGTAATACTCTCAGGCAGAACCTCATCTCCCCT---CACTATAGC 1431
|||||||||||||||||||| | ||||||| | |||||||| | ||| |||||||||
Sbjct 1469 CAAAAACTAGGAGAGAGTAACAATCTCAGGGAAAACCTCATTTTTCCTGATCACTATAGC 1528
Query 1432 TTCCCTGAAAGACTTCGATGGCGAGAGATAATGGTCGGAATGTATCTCTTCATATGTGGA 1491
||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1529 TTCCCCGAGAGACTTCGATGGCGAGAGATAATGGTTGGAATGTATCTCTTCATATGTGGA 1588
Query 1492 TACTATGACTTTGTGTTCGGGAGGACATACCTTTATGTGTATCTTTTCTTGCAGTCTATT 1551
|||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1589 TACTATGATTTTGTGTTTGGGAGGACATACCTTTACGTGTATCTTTTCTTGCAGTCCATT 1648
Query 1552 GCCTTCTTCGTTGTTGGAGTTGGCTACATTGGAATGTCGGTTCCTAGTA 1600
|||||||| |||||||||||||||||| |||||||| ||||||| ||||
Sbjct 1649 GCCTTCTTTGTTGTTGGAGTTGGCTACGTTGGAATGCCGGTTCCAAGTA 1697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80421273090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5