BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938548
Length=637
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 926 0.0
> AT3G56010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages;
Has 25 Blast hits to 25 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20788670-20789924
FORWARD LENGTH=962
Length=962
Score = 926 bits (501), Expect = 0.0
Identities = 583/621 (94%), Gaps = 11/621 (2%)
Strand=Plus/Plus
Query 14 ATTCACAATGTCCGTCGTTCTCAACGCCGGCTAT-AGTTCTCCGCTTCACAACAGATCCC 72
|||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| |
Sbjct 82 ATTCACAATGTCCGTCGTTCTCAACGCCGGCT-TCAGTTCTCCGCTTCAAAACAGATCAC 140
Query 73 AACCTGTTATACCGTTAAAGACTTCGCCTTTTGCGTCATACATATCTCTAAACAGTTCAA 132
| | |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 141 ATCATGTTATACAGTTAAAGCCTTCGCCTTTTGCGTCATACATATCTCTAAACAGTTCAA 200
Query 133 GAAGGTCACTGTTAAGCAAAAGAAGATTGGTTGTATCATGTTTGGATACAAATGACAATT 192
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 201 GAAGGTCACTGTTATGCAAAAGAAGATTGGTTGTATCTTGTTTGGATACAAATGACAATT 260
Query 193 CTGTCACAACTACATCCGTAGA---------TTCTTCAGATTCTAATAAACCAGCAAGTG 243
|||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 261 CTGTCACAACTACATCCGTAGATTCTTCTTCTTCTTCAGATTCTAATAAACCAGTAAGTG 320
Query 244 AATCAGTTGAATCAGGCAATGGCTCTGCaaaaaaaGCACCATTGACAGCACGAGAGAGAC 303
|||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 321 AATCAGTTGAATCAAGCAATGGCACTGCCAAAAAAGCACCATTGACAGCACGAGAGAGAC 380
Query 304 TAAGAGCGGCTCGTGTTCTTAGCCGGTACACGGAAGCAACGCCGAAACCGTTAAAACCCA 363
||||||||||||||||||||||||| ||||| |||||||| |||||||||| |||||| |
Sbjct 381 TAAGAGCGGCTCGTGTTCTTAGCCGATACACTGAAGCAACACCGAAACCGTCAAAACCTA 440
Query 364 AAATGGGAAGCCAACTTCTTGATGTGCTCAAGGAAAGTGATAAGAAATCAAAGAGGAAAC 423
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 AAATGGGGAGCCAACTTCTTGATGTGCTCAAGGAAAGTGATAAGAAATCAAAGAGGAAAC 500
Query 424 CGGGTCTACCCGAAGCACCAACCAACATGCTTGATGATAGCAGGAGAGGGATGCCGAAGA 483
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 501 CGGGTCTACCCGAAGCACCAACTAACATGCTTGATGATAGCAGGAGAGGGATGCCAAAGA 560
Query 484 GCGGCCTTACGTTTGATTTACCGGGAGGCTCAGATATTCTCATCATTGCTTTCTCCTTTG 543
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 561 GCGGTCTTACGTTTGATTTACCGGGAGGCTCGGATATTCTCATCATTGCTTTCTCCTTTG 620
Query 544 TGTTCATAAGCACTGTGATGTTTGCTACTACTTTTCTTGTCTGGAAACTCGGAGCAATAC 603
||||||||||||| || ||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 621 TGTTCATAAGCACAGTCATGTTTGCTACTACTTTTCTTGTTTGGAAACTCGGTGCGATAC 680
Query 604 ACTTCAACGAATAGTAAAGTT 624
|||||||||||||||||||||
Sbjct 681 ACTTCAACGAATAGTAAAGTT 701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30743297964
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5