BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938554
Length=571
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56070.1 | Symbols: ROC2 | rotamase cyclophilin 2 | chr3:208... 815 0.0
> AT3G56070.1 | Symbols: ROC2 | rotamase cyclophilin 2 | chr3:20806749-20808152
REVERSE LENGTH=903
Length=903
Score = 815 bits (441), Expect = 0.0
Identities = 519/557 (93%), Gaps = 4/557 (1%)
Strand=Plus/Plus
Query 13 AGAGGAAAATGTCGAACCCAAAAGTCTTCTTTGATATCTTGATTGGAAAGATGAAGGCGG 72
|||| |||||| |||| || ||||||||||| || ||||||||||| ||||||||||| |
Sbjct 127 AGAGTAAAATGGCGAATCCTAAAGTCTTCTTCGACATCTTGATTGGTAAGATGAAGGCAG 186
Query 73 GGCGTGTTGTAATGGAGTTATTCGCAGATGTAACTCCGAGAACAGC-AGATAATTTCCGT 131
|||||||||||||||||||||| |||||||| |||||||||||||| | |||||||||||
Sbjct 187 GGCGTGTTGTAATGGAGTTATTTGCAGATGTGACTCCGAGAACAGCTA-ATAATTTCCGT 245
Query 132 GCTCTGTGCACTGGAGAGAAGGGAATTGGGAGAGCAGGAAAGGCATTACACTACAAAGGC 191
||| |||||||||| ||||| || ||||||| |||||| ||||| |||||||||||||||
Sbjct 246 GCTTTGTGCACTGGGGAGAATGGTATTGGGAAAGCAGGGAAGGCTTTACACTACAAAGGC 305
Query 192 TCTTCCTTTCACCGTATAATCCCAGGATTCATGTGTCAAGGTGGAGATTTCACCCGTGGG 251
|| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 306 TCAGCCTTTCACCGTATAATCCCAGGGTTCATGTGTCAAGGTGGAGATTTCACTCGTGGG 365
Query 252 AATGGAACTGGAGGAGAATCGATTTACGGGTCTAAATTTGATGACGAGAACTTCAAGTTG 311
|||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 366 AATGGAACTGGAGGAGAATCTATTTACGGGTCTAAATTTGAAGATGAGAACTTCAAGTTG 425
Query 312 AAGCATACTGGTCCAGGGATTTTGTCTATGGCTAATTCTGGTCCCAACACAAATGGTTCT 371
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 426 AAGCACACTGGTCCAGGGATTTTGTCTATGGCTAACTCTGGTCCCAACACTAATGGTTCT 485
Query 372 CAGTTCTTCATCTGCACAGAGAAGACATCGTGGCTTGATGGGAAACACGTTGTTTTTGGG 431
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 486 CAGTTCTTCATCTGCACAGAGAAGACTTCGTGGCTTGATGGGAAACATGTTGTTTTCGGG 545
Query 432 AAAGTTGTTGATGGATACAATGTGGTCAAGGCAATGGAGAATGTTGGCTCTGACATGGGA 491
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 546 AAAGTTGTTGATGGATACAATGTGGTCAAGGCAATGGAGGATGTTGGCTCTGACATGGGA 605
Query 492 AATCCCTCTGAACCAGTTGTGATTGAAGATTGTGGTGAGCTAAAGAACCCAAGTTCATAA 551
||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 606 AATCCTTCTGAACGAGTTGTGATTGAAGATTGTGGTGAGCTCAAGAACCCAAGTTCATAA 665
Query 552 GTT-TTAAACACATTGG 567
||| ||||| |||||||
Sbjct 666 GTTCTTAAA-ACATTGG 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27427844262
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5