BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg938556 Length=344 Score E Sequences producing significant alignments: (Bits) Value AT3G53668.1 | Symbols: CPuORF51 | conserved peptide upstream op... 268 2e-71 AT3G53670.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 268 2e-71 > AT3G53668.1 | Symbols: CPuORF51 | conserved peptide upstream open reading frame 51 | chr3:19890421-19892404 FORWARD LENGTH=1398 Length=1398 Score = 268 bits (145), Expect = 2e-71 Identities = 174/187 (93%), Gaps = 5/187 (3%) Strand=Plus/Plus Query 4 AAGGTGGTCGAGAGAAGCATGGCAAGTCACTCGAGAAAGCTGAGCT-TGTCATGGGCTGG 62 ||||||||||||||||||||||||||||||||||||| ||| || | |||||||||||| Sbjct 916 AAGGTGGTCGAGAGAAGCATGGCAAGTCACTCGAGAA-GCTCAG-TGTGTCATGGGCTGA 973 Query 63 AGATATGTATGATCCTC-TACCCTCCATTGTCTCTCACACAAGAAGCAAGAAACAGCAAC 121 |||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 974 AGATGTGTATGATCCTCCT-CCCTCCATTGTCTCTCACACAAGAAGCAAGAAACAGCAAC 1032 Query 122 CGCAGAAATCAAAGAGCAAAGACAATCTGAAGATGAATGGAAAGAAAGGACTTAAGGGAA 181 ||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| Sbjct 1033 CGCAGAAATCAAAGAGCAAAGACAACCTGAAGAAGAATGGAAAGAAAGGACAAAAGGGAA 1092 Query 182 TCAGCAA 188 |||||| Sbjct 1093 GCAGCAA 1099 > AT3G53670.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37480.1); Has 176 Blast hits to 173 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 13; Plants - 154; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:19890421-19892404 FORWARD LENGTH=1398 Length=1398 Score = 268 bits (145), Expect = 2e-71 Identities = 174/187 (93%), Gaps = 5/187 (3%) Strand=Plus/Plus Query 4 AAGGTGGTCGAGAGAAGCATGGCAAGTCACTCGAGAAAGCTGAGCT-TGTCATGGGCTGG 62 ||||||||||||||||||||||||||||||||||||| ||| || | |||||||||||| Sbjct 916 AAGGTGGTCGAGAGAAGCATGGCAAGTCACTCGAGAA-GCTCAG-TGTGTCATGGGCTGA 973 Query 63 AGATATGTATGATCCTC-TACCCTCCATTGTCTCTCACACAAGAAGCAAGAAACAGCAAC 121 |||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 974 AGATGTGTATGATCCTCCT-CCCTCCATTGTCTCTCACACAAGAAGCAAGAAACAGCAAC 1032 Query 122 CGCAGAAATCAAAGAGCAAAGACAATCTGAAGATGAATGGAAAGAAAGGACTTAAGGGAA 181 ||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| Sbjct 1033 CGCAGAAATCAAAGAGCAAAGACAACCTGAAGAAGAATGGAAAGAAAGGACAAAAGGGAA 1092 Query 182 TCAGCAA 188 |||||| Sbjct 1093 GCAGCAA 1099 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16085679680 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5