BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938556
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53668.1 | Symbols: CPuORF51 | conserved peptide upstream op... 268 2e-71
AT3G53670.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 268 2e-71
> AT3G53668.1 | Symbols: CPuORF51 | conserved peptide upstream
open reading frame 51 | chr3:19890421-19892404 FORWARD LENGTH=1398
Length=1398
Score = 268 bits (145), Expect = 2e-71
Identities = 174/187 (93%), Gaps = 5/187 (3%)
Strand=Plus/Plus
Query 4 AAGGTGGTCGAGAGAAGCATGGCAAGTCACTCGAGAAAGCTGAGCT-TGTCATGGGCTGG 62
||||||||||||||||||||||||||||||||||||| ||| || | ||||||||||||
Sbjct 916 AAGGTGGTCGAGAGAAGCATGGCAAGTCACTCGAGAA-GCTCAG-TGTGTCATGGGCTGA 973
Query 63 AGATATGTATGATCCTC-TACCCTCCATTGTCTCTCACACAAGAAGCAAGAAACAGCAAC 121
|||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 974 AGATGTGTATGATCCTCCT-CCCTCCATTGTCTCTCACACAAGAAGCAAGAAACAGCAAC 1032
Query 122 CGCAGAAATCAAAGAGCAAAGACAATCTGAAGATGAATGGAAAGAAAGGACTTAAGGGAA 181
||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||
Sbjct 1033 CGCAGAAATCAAAGAGCAAAGACAACCTGAAGAAGAATGGAAAGAAAGGACAAAAGGGAA 1092
Query 182 TCAGCAA 188
||||||
Sbjct 1093 GCAGCAA 1099
> AT3G53670.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G37480.1);
Has 176 Blast hits to 173 proteins in 30 species: Archae -
0; Bacteria - 0; Metazoa - 8; Fungi - 13; Plants - 154; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:19890421-19892404
FORWARD LENGTH=1398
Length=1398
Score = 268 bits (145), Expect = 2e-71
Identities = 174/187 (93%), Gaps = 5/187 (3%)
Strand=Plus/Plus
Query 4 AAGGTGGTCGAGAGAAGCATGGCAAGTCACTCGAGAAAGCTGAGCT-TGTCATGGGCTGG 62
||||||||||||||||||||||||||||||||||||| ||| || | ||||||||||||
Sbjct 916 AAGGTGGTCGAGAGAAGCATGGCAAGTCACTCGAGAA-GCTCAG-TGTGTCATGGGCTGA 973
Query 63 AGATATGTATGATCCTC-TACCCTCCATTGTCTCTCACACAAGAAGCAAGAAACAGCAAC 121
|||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 974 AGATGTGTATGATCCTCCT-CCCTCCATTGTCTCTCACACAAGAAGCAAGAAACAGCAAC 1032
Query 122 CGCAGAAATCAAAGAGCAAAGACAATCTGAAGATGAATGGAAAGAAAGGACTTAAGGGAA 181
||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||
Sbjct 1033 CGCAGAAATCAAAGAGCAAAGACAACCTGAAGAAGAATGGAAAGAAAGGACAAAAGGGAA 1092
Query 182 TCAGCAA 188
||||||
Sbjct 1093 GCAGCAA 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16085679680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5