BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938559
Length=1818
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56080.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 2881 0.0
> AT3G56080.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr3:20810309-20813036
REVERSE LENGTH=2098
Length=2098
Score = 2881 bits (1560), Expect = 0.0
Identities = 1736/1822 (95%), Gaps = 7/1822 (0%)
Strand=Plus/Plus
Query 1 TTGTGTGG--AAACGTAAGAAAGAATGATCAAGAACATCTTCCAAAGTCGGAAACTCTCA 58
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 26 TTGTGTGGAAAAACG-AAGAAAGAATGATCAAGAACATCTTCCAAAGTCGGAAACTCTCA 84
Query 59 GGCCTCTGTGTTCTCTCAATCTTGCTCGTATCAGTCACAATCCTCCTCTTAACCAATGAC 118
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 85 GGTCTCTGTGTTCTCTCAATCTTGCTCGTATCAGTCACAATCCTCCTCTTGACCAATGAT 144
Query 119 ACCATCGAtctcttcccttacttgtctctctcttatctccgtcgatcttctctctcCGAC 178
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
Sbjct 145 ACCATCGATCTCTTCCCTTACTTGTCTCTCCCTTATCTCCCTCGATCTTCTCTCTCCGTC 204
Query 179 ATCCCTACCTCCACACCAATCTCGAGTCCCACCAACGACTCGTCTCCTCCTCGGGAACCA 238
|||||||||||||| |||||||||||||||||||||||||| || ||||||| |||| ||
Sbjct 205 ATCCCTACCTCCACGCCAATCTCGAGTCCCACCAACGACTCATCACCTCCTCTGGAATCA 264
Query 239 CCGGTTAATCAGACCCGAGTCGATGATCATCC-GAATGATCAAGGTTTGGAATTGGATTG 297
||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 265 CCGGTTAATCAAACCCGAGTCGATGATCATCCTG-ATGATCAAGGTTTGGAATTGGATTG 323
Query 298 GCTTAAAGACGACAAAGAATGGAATGTGAGTTTGAAGATAGATTGGAGGAGATGTGAGAG 357
||||||||| |||||| ||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 324 GCTTAAAGATGACAAACAATGGAACGTGAGTTTGAAGATAGATTGGAAGAGATGTGAGAG 383
Query 358 TCCAGATTACATACCGTGTTTGGATAACACAAAAGCTATCAAGAAACTTAAGTCGAAGAG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 TCCAGATTACATACCGTGTTTGGATAACACAAAAGCTATCAAGAAACTTAAGTCGAAGAG 443
Query 418 GAACATGGAACACAGAGAGAGACATTGTCCCGAGCCTGCACCTAAATGTTTGGTTCCTTT 477
|||||||| |||||||||||||||||||| |||| | |||| |||||||||||||||||
Sbjct 444 AAACATGGAGCACAGAGAGAGACATTGTCCTGAGCGTTCACCAAAATGTTTGGTTCCTTT 503
Query 478 GCCACAACGTTACAAAGTTCCTCTTCCTTGGCCTCAGAGTAGGGACATGATTTGGTATGA 537
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 504 GCCACAACATTACAAAGTTCCTCTTCCTTGGCCTCAGAGTAGAGACATGATTTGGTATGA 563
Query 538 TAATGTTCCTCATCCGAAACTTGTTGAATATAAGAAAGATCAGAATTGGGTTCGTAAATC 597
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 564 TAATGTTCCTCATCCGAAACTTGTAGAATACAAGAAAGATCAGAATTGGGTTCGTAAATC 623
Query 598 TGGACCTTTCTTTGTCTTCCCTGGAGGTGGAACTCAATTCAAAGACGGTGTTATTCACTA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 TGGACCTTTCTTTGTCTTCCCTGGAGGTGGAACTCAATTCAAAGACGGTGTTATTCACTA 683
Query 658 CATCAACTTCATACAAAAGACGTTACCTGTTCTTGAATGGGGGAAGAAAGTAAGAGTGGT 717
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 684 CATCAACTTCATACAAAAGACGTTACCTATTCTTGATTGGGGGAAGAAAGTAAGAGTGGT 743
Query 718 TCTTGATGTTGGTTGTGGTGTGGCTAGCTTTGGTGGGACTTTACTTGATAAAAACGTAAT 777
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 744 TCTAGATGTTGGTTGTGGTGTGGCTAGCTTTGGTGGGACTTTACTTGATAAGAACGTTAT 803
Query 778 CACAATGTCATTTGCTCCTAAAGACGAACACGAAGCTCAGATTCAGTTCGCACTAGAACG 837
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 804 CACAATGTCATTTGCTCCTAAAGACGAACACGAAGCTCAGATTCAGTTCGCACTGGAACG 863
Query 838 AGGAATTCCCGCTACTCTGGCTGTTATTGGAACTCAAAAGCTTCCTTTTCCTGATAATGC 897
||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 864 AGGGATTCCCGCTACACTCGCTGTTATTGGAACTCAAAAGCTTCCTTTTCCTGATAATGC 923
Query 898 TTATGACGTTATCCATTGCGCTAGATGCAGAGTCCATTGGCATGGATACGGTGGTAGACC 957
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 TTACGACGTAATCCATTGCGCTAGATGCAGAGTCCATTGGCATGGATACGGTGGTAGACC 983
Query 958 ACTTTTGGAACTTAACCGGGTTCTAAGGCCTGGAGGGTTTTTTGTTTGGTCAGCTACACC 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 ACTTTTGGAACTTAACCGGGTTCTAAGGCCTGGAGGGTTTTTTGTTTGGTCAGCTACACC 1043
Query 1018 GGTTTATCAACACGATGAAGGGCACCGTAATGTTTGGAAAACAATGGAGTCTTTGACTAC 1077
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 AGTTTATCAACACGACGAAGGGCACCGTAATGTTTGGAAAACAATGGAGTCTTTGACTAC 1103
Query 1078 ATCAATGTGTTGGAAAGTTGTGGCTAGAACTCGATTCACTAAAGTTGGATTCGTTATTTA 1137
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1104 ATCAATGTGTTGGAAAGTTGTGGCTAGAACTCGATTCACTAAAGTTGGATTCGTGATTTA 1163
Query 1138 CCAGAAACCAAACTCAGATTCTTGCTATGAATCGCGTAAAGACAAAGATCCGCCTCTCTG 1197
|||||||||| ||||||||||||| |||||||| |||||| |||||||||||||||||||
Sbjct 1164 CCAGAAACCAGACTCAGATTCTTGTTATGAATCTCGTAAAAACAAAGATCCGCCTCTCTG 1223
Query 1198 CATCGAAGAAGAGACCAAGAAGAACAGTTCATGGTACACTCCTCTGCTCACCTGTCTACC 1257
||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1224 CATTGAAGAAGAGACCAAGAAGAACAGTTCATGGTACACTCCTCTGCTTACTTGTCTACC 1283
Query 1258 AAAACTACCGGTCAGTCCAATCGGAAAATGGCCTTCGGGTTGGCCTGAAAGGTTAACTGA 1317
|||||||||||||||||||| || ||||||||||| ||||||||||| |||||||| ||
Sbjct 1284 GAAACTACCGGTCAGTCCAATAGGGAAATGGCCTTCCGGTTGGCCTGAGAGGTTAACGGA 1343
Query 1318 TACACCGGTTAGCCTCTTGAGAGAACAGAGGAGTGAAGAGAGTTTCAGAGAAGACA-CTA 1376
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| | |
Sbjct 1344 GACACCGGTTAGCCTCTTTAGAGAGCAGAGGAGTGAAGAGAGTTTCAGAGAAGACAGC-A 1402
Query 1377 AACTCTGGTCTGGAGTCATGTCAAATATCTACCTATATAGTCTAGCTATAAACTGGACCA 1436
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
Sbjct 1403 AACTCTGGTCTGGAGTCATGTCTAATATCTACCTATATAGTTTAGCTATAAACTGGACTA 1462
Query 1437 GGATTCACAATGTTATGGACATGAACGCTGGTTATGGAGGATTTGCGACTGCTCTTATAA 1496
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1463 GGATTCACAATGTTATGGACATGAACGCTGGTTATGGAGGATTTGCGGCTGCTCTTATAA 1522
Query 1497 ACAAACCTCTCTGGGTGATGAATGTGATTCCTGTGGAAGGTGAAGACACATTATCGACGA 1556
|||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1523 ACAAACCTCTGTGGGTGATGAATGTGATTCCTGTAGAAGGTGAAGACACGTTATCGACGA 1582
Query 1557 TTTTCGATAGAGGTTTGATCGGGATTTATCATGATTGGTGTGAGTCGTTCAATACATATC 1616
|||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||| |
Sbjct 1583 TTTTTGATAGAGGTTTGATAGGGATATACCATGATTGGTGTGAGTCGTTCAATACATACC 1642
Query 1617 CAAGATCATATGATCTCTTGCACTCTAGTTTCCTTCTCACCAGTCTTTCTCAAAGGTGTG 1676
||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||
Sbjct 1643 CAAGATCATATGATCTCTTGCACTCTAGTTTCCTTTTTACCAATCTTTCTCAAAGGTGTG 1702
Query 1677 ATTTGATGGAGGTGGTAGTGGAAATAGACAGAATAGTAAGACCAGGAGGGTATCTTGTGG 1736
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 1703 ATTTGATGGAGGTGGTAGTGGAAATAGACCGAATACTAAGACCAGGAGGGTATCTTGCGG 1762
Query 1737 TGCAAGACACTGTTGAAATGTTGAAGAAGTTAAACCCTATTCTTTTATCACTCCGATGGT 1796
||||||||||||| |||||| | |||||| ||||||||||||||||||||||||||||||
Sbjct 1763 TGCAAGACACTGTCGAAATGCTAAAGAAGCTAAACCCTATTCTTTTATCACTCCGATGGT 1822
Query 1797 CAACGAATATGTACAGAGGCAA 1818
|||||||| |||||||||||||
Sbjct 1823 CAACGAATCTGTACAGAGGCAA 1844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89959376640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5