BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938564
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56120.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1711 0.0
> AT3G56120.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr3:20823146-20826543
FORWARD LENGTH=1690
Length=1690
Score = 1711 bits (926), Expect = 0.0
Identities = 998/1034 (97%), Gaps = 0/1034 (0%)
Strand=Plus/Plus
Query 381 CTCCTTCCATTCAAAGATGTTATAGCAAAGGTTATCTACGATAAAAATTATCCAAGGATC 440
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 491 CTCCTTCCATTCAAAGATGTTATAGCAAAGGTTATCTACGACAAAAATTATCCAAGGATC 550
Query 441 AAGACAATTGTGAATAAAGTCGGGAGTATCAGTAATGAGTTTCGAGTGCCAAAGTTTGAA 500
||||||||||| |||||||| |||| ||||||||||||||||||||| ||||||||||||
Sbjct 551 AAGACAATTGTTAATAAAGTTGGGACTATCAGTAATGAGTTTCGAGTTCCAAAGTTTGAA 610
Query 501 GTGCTAGCTGGCGAAAATGGGATGGAAACGGAAGTAAAACAATATGGGGCAAGATTTAAG 560
||| ||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 611 GTGTTAGCTGGAGAAAATGGGATGGAAACAGAAGTAAAGCAATATGGGGCTAGATTTAAG 670
Query 561 CTGGACTATGGCTTGGTTTATTGGAATTCAAGATTGGAACATGAGCACATGCGGCTTTCA 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 CTGGACTATGGCTTGGTTTATTGGAATTCAAGATTGGAACATGAGCACATGCGGCTTTCA 730
Query 621 TCTTTGTTTAAACCTGGAGAAACCGTGTGTGATATGTTTGCTGGTATAGGGCCTTTTGCT 680
||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 731 TCTTTGTTTAAACCTGGGGAAACCGTATGTGATATGTTTGCTGGTATTGGGCCTTTTGCT 790
Query 681 ATTCCAGCTGCACAGAAAGGATGCTTCGTTTATGCAAATGATTTAAATCCAGACAGTGTT 740
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 791 ATTCCAGCTGCACAGAAAGGATGCTTTGTGTATGCAAATGATTTAAATCCAGACAGTGTT 850
Query 741 CGGTACTTGAAGATCAATGCAAAGTTCAATAAGGTTGACGATTTGATTTGTGTGCACAAT 800
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 851 CGGTACTTGAAGATCAATGCAAAGTTCAATAAGGTTGATGATTTGATTTGTGTGCACAAC 910
Query 801 ATGGATGCTCGTAAATTTTTCTCTCAGTTGATGGCGGTGTCAACTTGTGAGGGTAATTTG 860
|||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||
Sbjct 911 ATGGATGCTCGTAAATTTTTCTCTCACTTGATGGCGGTGTCAACTTGCGAGGATAATTTG 970
Query 861 CAATCAGTGGCTGATAATGATAAAACAAAGGAAGCAGCCGTGAGTCGAGGAGGTGAGACT 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 CAATCAGTGGCTGATAATGATAAAACAAAGGAAGCAGCCGTGAGTCGAGGAGGTGAGACT 1030
Query 921 AATTCCAGTGAAGAGGAGATACGTGAATCAAATGCGAGCAGAAATGAGCCTCTTGGTGCA 980
|||||||||| |||||| ||||||||||| ||||| |||| |||||||||||||||||||
Sbjct 1031 AATTCCAGTGGAGAGGAAATACGTGAATCCAATGCAAGCATAAATGAGCCTCTTGGTGCA 1090
Query 981 AATAAGAAGCCATCTGGTACTACAGAGACAGAAAATGGGGTAGGAAAAGATTGCAAGAGT 1040
|||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||
Sbjct 1091 AATAAGAAGCCATCTGGTACTACAAAGACGGAAAATGGGGTAGGAAAAGACTGCAAGAGT 1150
Query 1041 ATTGAAGGACACGCAAATAAGAGGTTGAGACAAACGTTGCTTCCAATCGCAAAGCCGTGG 1100
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1151 ATAGAAGGACACGCAAATAAGAGATTGAGACAAACGTTGCTTCCAATCGCAAAGCCGTGG 1210
Query 1101 GAACATATTGACCATGTTATTATGAACCTTCCAGCTTCTGCCTTGCAGTTTCTCGATTCT 1160
|||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1211 GAACATATCGACCATGTTATTATGAACCTTCCAGCATCTGCCTTGCAGTTTCTTGATTCG 1270
Query 1161 TTCAGTAATGTTATTCAAAAGAAGTATTGGAAAGGACCTCTTCCTTTAATTCATTGCTAT 1220
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1271 TTCAGTAATGTTATTCAAAAGAAGTATTGGAAAGGACCTCTTCCATTAATTCATTGCTAT 1330
Query 1221 TGTTTCATCCGTGCAAGCGAAACCACAGAGTTTATAATTGCAGAAGCTGAAACTGCTTTG 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 TGTTTCATCCGTGCAAGCGAAACCACAGAGTTTATAATTGCAGAAGCTGAAACTGCTTTG 1390
Query 1281 AAGTTCCATATAGAAGATCCAGTCTTCCACAAGGTTAGAGATGTTGCTCCAAACAAGGCT 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 AAGTTCCATATAGAAGATCCAGTCTTCCACAAGGTTAGAGATGTTGCTCCAAACAAGGCT 1450
Query 1341 ATGTTTTGCCTAAGCTTTAGACTACCTGAAGCATGCTTGAAGCAAGAAGACTAAAAGACA 1400
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1451 ATGTTTTGCCTAAGCTTTAGACTACCTGAAGCATGCTTGAAGCAAGAAGAGTAAAAGACA 1510
Query 1401 TTTCTAGGAAAGAA 1414
||||||||||||||
Sbjct 1511 TTTCTAGGAAAGAA 1524
Score = 619 bits (335), Expect = 2e-176
Identities = 366/381 (96%), Gaps = 2/381 (1%)
Strand=Plus/Plus
Query 1 AAAACGACACCGTTAGCACCATGTTTGATGAAAGCAAGTTCGATGTCAATCTCAAGCTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 AAAACGACACCGTTAGCACCATGTTTGATGAAAGCAAGTTCGATGTCAATCTCAAGCTCT 137
Query 61 GGGCTCTTAGAATTCCCCGGGAACTCTGTAAAAGCGCAACTCGCATTCTCAATGGATACA 120
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 138 GGGCTCTTAGAATTCCCCGTGAACTCTGTAAAAGCGCATCTCGCATTCTCAATGGATACA 197
Query 121 TGCTCAATATGCCACGAATTAAGCCCATCACTGAAGATCCTACCTGTGAAAAGACTCGTT 180
|||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 TGCTTAACATGCCGCGAATTAAGCCCATCACTGAAGATCCTACCTGTGAAAAGACTCGTT 257
Query 181 TGGTGATATTGTCCGAAAGTGTTAAAAATGCTGATTTGGT-GGAGATACCCGATGAAAAA 239
|||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||
Sbjct 258 TGGTGATATTGTCCGAAAGTGTTAAAAATGCTGATTTG-TCGGAGATACCCGAGGAAAAA 316
Query 240 CTAAACCAGCTTAAGAAACTAAGTGAACTTGAAGTTGTTCCTCATTCGGTTACTCTTGGG 299
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 317 CTAAACCAGCTTAAGAAACTTAGTGAACTTGAGGTTGTTCCTCATTCGGTTACTCTTGGG 376
Query 300 TATTCCTATTGGAGTGCAGATCACATATTGAAGCAGATTCTACCAGATGGAGTGGATATA 359
|||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||||||
Sbjct 377 TATTCCTATTGGAGTGCAGACCACCTTTTGAAGCAGATTCTACCAGATGGATTGGATATA 436
Query 360 CCTTCCTCTTTTGAAACAATA 380
||||||||||||||||| |||
Sbjct 437 CCTTCCTCTTTTGAAACTATA 457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69728557005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5