BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938597

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G56420.1 | Symbols:  | Thioredoxin superfamily protein | chr...   436    5e-122


> AT3G56420.1 | Symbols:  | Thioredoxin superfamily protein | chr3:20922140-20923234 
REVERSE LENGTH=650
Length=650

 Score =  436 bits (236),  Expect = 5e-122
 Identities = 250/257 (97%), Gaps = 0/257 (0%)
 Strand=Plus/Plus

Query  113  GCGCGCCGTGGTGTGTACCTTGTAAAAAGATAGAACCAGTATTCAGGGAGCTTGCTTCTA  172
            ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  394  GCGCGCCATGGTGTGTACCTTGTAAAAAGATAGAACCAGTATTCAGGGACCTTGCTTCTA  453

Query  173  GATACCCTTCAATGATATTTGTAACTGTTGATGTCGAAGAGCTCGCTGAGTTTAGTAATG  232
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  454  GATACCCTTCAATGATATTTGTAACGGTTGATGTCGAAGAGCTCGCTGAGTTTAGTAATG  513

Query  233  AATGGAATGTGGAAGCTACACCAACTGTAGTGTTCCTTAAAGATGGGAGACAAATGGATA  292
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  514  AATGGAATGTGGAAGCTACACCAACTGTAGTGTTCCTTAAAGATGGGAGACAAATGGATA  573

Query  293  AACTTGTTGGTGCTGAAACCTCAGAGCTGCAAAAGAAGACAGCTGCAGCTGCTGATCTCT  352
            |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct  574  AACTTGTTGGTGCTGAAACCTCAGAGCTTCAGAAGAAGACAGCTGCAGCTGCTGATCTCT  633

Query  353  TTCTCAAAAAACCATAA  369
            |||||| |||||| |||
Sbjct  634  TTCTCAGAAAACCTTAA  650


 Score =  100 bits (54),  Expect = 8e-21
 Identities = 81/92 (88%), Gaps = 9/92 (10%)
 Strand=Plus/Plus

Query  31   TATGGCCATGTATATGCTGCTGCAG---CAACAACAAC-A-AG----GCTCAAACCCGAA  81
            ||||| |||||||||||||||||||   |||||||||| | ||    | |||||||||||
Sbjct  226  TATGGTCATGTATATGCTGCTGCAGCAACAACAACAACAACAGTTATGGTCAAACCCGAA  285

Query  82   GCCAACACGGGTCCAAAGGAAAGGTCCATCCG  113
            ||||||||||||||||||||||||||||||||
Sbjct  286  GCCAACACGGGTCCAAAGGAAAGGTCCATCCG  317



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18347728385


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5