BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938598
Length=1360
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56430.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2198 0.0
AT2G40800.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 929 0.0
> AT3G56430.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion, vacuole; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT2G40800.1);
Has 3121 Blast hits to 1477 proteins in 196 species:
Archae - 12; Bacteria - 170; Metazoa - 996; Fungi - 324;
Plants - 132; Viruses - 59; Other Eukaryotes - 1428 (source:
NCBI BLink). | chr3:20923600-20925809 REVERSE LENGTH=1471
Length=1471
Score = 2198 bits (1190), Expect = 0.0
Identities = 1305/1361 (96%), Gaps = 5/1361 (0%)
Strand=Plus/Plus
Query 1 TTCGATCTAAAACCCTAAAAAGATGGTGAAACCCTCTGATTTCAAAGCAGTGCACAAACT 60
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 92 TTCGATCTAAAACCCTAAAAAGATGGTGAAACCTTCCGATTTCAAAGCAGTTCACAAACT 151
Query 61 TATTCAATTGCATTACAGTCGAGTCAACCTGGTCACAACGACGGGCCGGTCAAAACTCTC 120
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 152 TATTCAATTGCATTACAGTCGAGTCAACCTGTTCACAACGACGGGATGGTCAAAACTCTC 211
Query 121 CGCTTTGTCTTCTCCGACTCTTCCTTCAAATGGGGTTTCTCAGCTTCAGGCTAAGTCCGG 180
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 212 AGCTTTGTCTTCTCCGGCTCTTCCTTCAAATGGGGTTTCTCAGCTTCAGCCTAAGTCTGG 271
Query 181 TTTCCACAGCTTTTCGTCGAGACCCACTGCGAAAAACTTTGGCTTGTCCCAGATTCTTCC 240
|||||||| ||| ||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 272 TTTCCACACCTTCTCGTCGAGACCCACTTCGAAAAACTTTGGCTTATCCCAGATTCTTCC 331
Query 241 CTCTAATGGGGTTTCTCAGCTTCAACCTAAGACCAGTTTCCACAGCTTTTTGTCAAGACC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 332 CTCTAATGGGGTTTCTCAGCTTCAACCTAAGACCAGTTTCCACAGCTTTTTGTCGAGACC 391
Query 301 CACTTCGAAAAATGTGGGATTATCCCAGATTCTACCCAGTAGTCCTAAGCTCGTACCTAG 360
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct 392 CACTTCGAAAAATGTGGGATTATCCCAGATTTTACCC---AGTCCTAAGCTCGTACCTGG 448
Query 361 TTTGCAGAATTGTGGTGTAGCGTTGGTTAAGCCCCGTGTTAATGTGAACTTTGCATCGGC 420
||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||
Sbjct 449 TTTGCAGAATTGTGGTGTAGCCTTGGTTAAGCCCCGTGTTAATATGAACTTTGTATCGGC 508
Query 421 TTTTAGATTGTTTTCGAGCTCTGGGTTTCGAAAAGTCGATGGGAATTTCGCTAGAAAGGT 480
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 509 GTTTAGATTGTTTTCGAGCTCTGGATTTCGAAAAGTTGATGGGAATTTCGCTAGAAAGGT 568
Query 481 TGTTGACAAGCCAATCCAAGCTGTTAGTTCGACTTTTGCTAGATACCGAATGGCTTTAGG 540
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 TGTTGACAAGCCAATCAAAGCTGTTAGTTCGACTTTTGCTAGATACCGAATGGCTTTAGG 628
Query 541 GTTGCACATTGATGCGTTTTGGAAGAAGAATAACCTTTTGGTGTTTGGAGCAGGAGCTGT 600
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 GTTGCACGTTGATGCATTTTGGAAGAAGAATAACCTTTTGGTGTTTGGAGCAGGAGCTGT 688
Query 601 TTTTGTATGTATTTTCTTGTGGAGGATCATGTTTGGAATTGCTAGCACATTCGTTGGTCT 660
|||||| |||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||
Sbjct 689 TTTTGTTTGTATTTTCTTGTGGAGGGTCATGTTTGGAATCGCTAGTACATTCGTTGGCCT 748
Query 661 CTCTGAGGGAATGGCCAAGTACGGCTTCCTTGCTCTCTCATCTGCCATTGTTGCATTTGC 720
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 749 CTCTGAGGGAATGGCCAAGTATGGCTTCCTTGCTCTCTCATCTGCCATTGTTGCATTTGC 808
Query 721 TGGTTTATACCTTCGCGCAAGGTTCACGATAAATCCCGATAAAGTCTATAGGATCACTAT 780
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 809 TGGTTTATACCTTCGCGCAAGGTTCACGATCAATCCCGATAAAGTTTACAGGATCACTAT 868
Query 781 GAGGAAGCTCAATACAGCGGCTGATGTTCTTGAAGTTATGGGTGCTCCTCTGGCAGGATC 840
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 869 GAGGAAGCTCAATACAGCGGCTGATGTTCTTGAAGTTATGGGTGCTCCTCTAGCAGGATC 928
Query 841 AGATTTGCGTGCTTATGTGATGTCAGGTGGTGGCATAACATTCAAAAAATTCAAGCCAAC 900
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 929 AGATTTGCGTGCTTATGTGATGTCAGGTGGTGGAATAACATTCAAAAAATTCAAGCCAAC 988
Query 901 AATTAGGAACAAGCGTTGCTTCCTCCTATTCCCGGTTCAAGGTTCCGAGAGAAAGGGCCT 960
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||
Sbjct 989 AATTAGGAACAAGCGTTGCTTCCTCCTATTCCCGGTTCAAGGTTCTGAGCGAAAGGGACT 1048
Query 961 TGTTAGTGTCGAAGTCAAGAAGAAGAAAGGCCAGTATGATATGAAACTACTGGCAGTGGA 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1049 TGTTAGTGTCGAAGTCAAGAAGAAGAAAGGCCAGTATGATATGAAACTACTGGCGGTGGA 1108
Query 1021 TATTCCAATGGCGTCTGGTCCTGATCAACGCTTATTCCTTATTGGTGATGAAGAAGAGTA 1080
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 TATTCCGATGGCGTCTGGTCCTGATCAACGCTTATTCCTTATTGGTGATGAAGAAGAGTA 1168
Query 1081 CAGAGTCGGTGGTGGTTTGATCTCTGAGTTAAGAGATCCTGTGGTAAAAGCAATGGCAGC 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 CAGAGTCGGTGGTGGTTTGATCTCTGAGTTAAGAGATCCTGTGGTAAAAGCAATGGCAGC 1228
Query 1141 AACCAAAGAATTTGATAATCTTGACagaattgaagaggaagaagacgccgaaagagaact 1200
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 AACCAAAGAGTTTGATAATCTTGACAGAATTGAAGAGGAAGAAGACGCCGAAAGAGAACT 1288
Query 1201 tcaagaagccgaaaggaaggaacgtgaagaaattgaacttcaagaagccgaaaggaaaga 1260
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1289 TCAAGAAGCCGAAAGGAAGGAACGTGAAGAGATTGAACTTCAAGAAGCCGAAAGGAAGGA 1348
Query 1261 acgtgaagaaatt-gaacttcaagaagcggaaagaaaacagcgtgaagaaaTTGAGAAGC 1319
|||||||||| || |||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 1349 ACGTGAAGAA-TTCGAACTTCAAGAAGCAGAAAGAAAGCAGCGTGAAGAAATCGAGAAGC 1407
Query 1320 TCGGAAAAGAGAGTTCTTAGTCGGTTCTATCGTACTTGCAC 1360
| | |||| ||||||||||||||||||||||||||||||||
Sbjct 1408 TTGAAAAATAGAGTTCTTAGTCGGTTCTATCGTACTTGCAC 1448
> AT2G40800.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G56430.1);
Has 43 Blast hits to 43 proteins in 15 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:17024391-17026973
REVERSE LENGTH=1600
Length=1600
Score = 929 bits (503), Expect = 0.0
Identities = 859/1028 (84%), Gaps = 36/1028 (4%)
Strand=Plus/Plus
Query 217 CTTTGGCTTGTCCCAGATTCTTCCCTCTAATGGGGTTTCTCAGCTTCAACCTAAGACCAG 276
||||| ||| | |||| | ||||||| ||||| |||||||||||||| |||||| ||
Sbjct 302 CTTTGTCTTCT-CCAG-CTATTCCCTCCAATGGTGTTTCTCAGCTTCAGCCTAAGTTTAG 359
Query 277 TTTCCACAGCTTTTTGTC-AAGACCCACTTCGAAAAATGTGGGATTATCCCAGATTCTAC 335
||||||||||| | || || ||||||||| ||||| |||||||||| ||||||||
Sbjct 360 CTTCCACAGCTTATCCTCGAA-ACCCACTTCCAAAAACGTGGGATTATATCAGATTCT-G 417
Query 336 CCAGTAGTCCTAAGCTCGTA-CCT-AGTTTGCAG-AATTGTGGTGTAGCGTTGGTTAAGC 392
| || |||||||||| | ||| || |||||| || | | | | |||| ||
Sbjct 418 TC-GT-CTCCTAAGCTC-AATCCTAAG-TTGCAGCAA----GCT-T----TGGGTT-TGC 463
Query 393 CCCGTGTTAATGTGAACTTTGCATCGGCTTTTAGATT-GT-T----TTCGAGCTCTGGGT 446
| ||||| ||||||| ||||||||||| |||||||| || | | ||||||||| |
Sbjct 464 CTCGTGTGAATGTGAGTTTTGCATCGGCGTTTAGATTGGTATCCACTAAGAGCTCTGGAT 523
Query 447 TTCGAAAAGTCGATGGGAATTTCGCTAGAAAGGTTGTTGACAAGCCAATCCAAGCTGTTA 506
||||||| || ||||||| ||| || |||||||||||||| ||||| || |||||||||
Sbjct 524 TTCGAAAGGTTGATGGGAGTTTTGCGAGAAAGGTTGTTGATAAGCCTGTCAAAGCTGTTA 583
Query 507 GTTCGACTTTTGCTAGATACCG-AATGGCTTTAGGGTTGCACATTGATGCGTTTTGGAAG 565
|||| ||||||||||||||||| | |||| ||||||||||||||||||| ||||||||
Sbjct 584 GTTCTACTTTTGCTAGATACCGTGA-GGCTATAGGGTTGCACATTGATGCATTTTGGAAA 642
Query 566 AAGAATAACCTT-TTGGTGTTTGGAGCAGGAGCTGTTTTTGTATGTATTTT-CTTGTGGA 623
||||||| ||| || ||||||||||| | || |||||||||||||||||| ||| |||
Sbjct 643 AAGAATAGTCTTGTT-GTGTTTGGAGCTGCAGGTGTTTTTGTATGTATTTTCCTT-TGGC 700
Query 624 GGATCATGTTTGGAATTGCTAGCACATTCGTTGGTCTCTCTGAGGGAATGGCCAAGTACG 683
|||| ||||||||||||||||| || || ||||| ||||| ||||| ||||||||||| |
Sbjct 701 GGATTATGTTTGGAATTGCTAGTACGTTTGTTGGCCTCTCAGAGGGCATGGCCAAGTATG 760
Query 684 GCTTCCTTGCTCTCTCATCTGCCATTGTTGCATTTGCTGGTTTATACCTTCGCGCAAGGT 743
| || ||||| ||||| || |||||||| |||||| |||| |||||||| ||| ||||||
Sbjct 761 GGTTTCTTGCACTCTCCTCAGCCATTGTAGCATTTTCTGGATTATACCTCCGCTCAAGGT 820
Query 744 TCACGATAAATCCCGATAAAGTCTATAGGATCACTATGAGGAAGCTCAATACAGCGGCTG 803
| || || ||||| |||||||| ||||| || || ||||||||| |||| || || ||||
Sbjct 821 TTACAATTAATCCGGATAAAGTTTATAGAATGACCATGAGGAAGATCAACACGGCAGCTG 880
Query 804 ATGTTCTTGAAGTTATGGGTGCTCCTCTGGCAGGATCAGATTTGCGTGCTTATGTGATGT 863
| |||| ||||||||||||||||||||| ||||||||||||| || || ||||||||||
Sbjct 881 AAATTCTAGAAGTTATGGGTGCTCCTCTGTCAGGATCAGATTTACGAGCGTATGTGATGT 940
Query 864 CAGGTGGTGGCATAACATTCAAAAAATTCAAGCCAACAATTAGGAACAAGCGTTGCTTCC 923
||||||||||||||||||| || |||||||||||||||||||||| |||||| ||||| |
Sbjct 941 CAGGTGGTGGCATAACATTTAAGAAATTCAAGCCAACAATTAGGAGCAAGCGCTGCTTTC 1000
Query 924 TCCTATTCCCGGTTCAAGGTTCCGAG-AGAAAGGGCCTTGTTAGTGTCGAAGTCAAGAAG 982
| |||||||| ||||| ||||| ||| | ||||||||||||||| || ||||| ||||||
Sbjct 1001 TTCTATTCCCCGTTCAGGGTTCTGAGCA-AAAGGGCCTTGTTAGCGTTGAAGTTAAGAAG 1059
Query 983 AAGAAAGGCCAGTATGATATGAAACTACTGGCAGTGGATATTCCAATGGCGTCTGGTCCT 1042
||||||||||||||||| ||||| || |||| || |||||||||||||| ||||||||
Sbjct 1060 AAGAAAGGCCAGTATGACATGAAGCTTTTGGCGGTAGATATTCCAATGGCATCTGGTCCC 1119
Query 1043 GATCAACGCTTATTCCTTATTGGTGATGAAGAAGAGTACAGAGTCGGTGGTGGTTTGATC 1102
|| ||||| ||||| || ||||| |||||||||||||||||| | ||||||||||| |||
Sbjct 1120 GACCAACGGTTATTTCTGATTGGCGATGAAGAAGAGTACAGAATTGGTGGTGGTTTAATC 1179
Query 1103 TCTGAGTTAAGAGATCCTGTGGTAAAAGCAATGGCAGCAACCAAAGAATTTGATAATCTT 1162
|||| ||||||||| ||||| || ||||||||||||||||| || || || |||||||||
Sbjct 1180 TCTGTGTTAAGAGACCCTGTTGTGAAAGCAATGGCAGCAACTAAGGAGTTCGATAATCTT 1239
Query 1163 GACagaattgaagaggaagaagacgccgaaagagaacttcaagaagccgaaaggaaggaa 1222
|| ||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||| |
Sbjct 1240 GATAGAATCGAAGAGGAAGAAGACGCTGAAAGAGAACTTCAAGAAGCTGAAAGAAAGCAT 1299
Query 1223 cgtgaaga 1230
||||||||
Sbjct 1300 CGTGAAGA 1307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66967527030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5