BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938620
Length=1653
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56600.1 | Symbols: | Protein kinase superfamily protein | ... 2473 0.0
AT2G40850.1 | Symbols: ATPI4K GAMMA 1, PI4K GAMMA 1 | phosphoin... 736 0.0
> AT3G56600.1 | Symbols: | Protein kinase superfamily protein
| chr3:20968444-20970913 FORWARD LENGTH=2251
Length=2251
Score = 2473 bits (1339), Expect = 0.0
Identities = 1536/1633 (94%), Gaps = 5/1633 (0%)
Strand=Plus/Plus
Query 6 aaaaaaaaaGTTTGGCATGAACTGTATGTCCGTGGCTTTCGATCCACTAACCGACCAGCT 65
|||||||| ||||||||||||||||||| |||| ||| |||||||||||||||||| | |
Sbjct 409 AAAAAAAAGGTTTGGCATGAACTGTATGGCCGTCGCTCTCGATCCACTAACCGACCGGTT 468
Query 66 TGCGCAGTTTAGCCGATCTTCACAAAGATGCAGACTCCAATCGTTAACCAACCTCGACTT 125
| |||||||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||
Sbjct 469 TTCGCAGTTTAGCCGATCTTCACAGAGATGTAGACTCCAATCTTTAACCAACCTTGACTT 528
Query 126 TAACTTTCTTGGTTTCAACACTAAACAAACCAATATCCCTGCTTCTTCACATTCCTTGAA 185
|||||||| || ||||||||||||||||||||| || ||||||| ||||| ||||||||
Sbjct 529 CAACTTTCTCGGATTCAACACTAAACAAACCAATCTCTCTGCTTCCTCACACTCCTTGAA 588
Query 186 CCACCGAAGTGTATCTACTCCATGCTTCTCCATATCCGGTAGTAATCTAGATGGCTCTAC 245
| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 589 CAACCGAAGCGTTTCTACTCCATGCTTCTCCATATCCGGTAGTAATCTAGATGGCTCTGC 648
Query 246 TGCTCCGCGCATTGAGATTCTCGGTGGTCAAAGAGTCCCCACTGTACGCGCCCTTGTAGC 305
| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 649 TACTCCGCACATTGAGATTCTCGGTGGTCAAAGAGTCCCCACTGTACGTTCCCTTGTAGC 708
Query 306 TGAAGTAACCATAGCTATGGTTTCTGGAGCTCAGCCTTTGCTTTTACCAAGTGGTTTAGG 365
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 709 TGAAGTAACCATAGCTATCGTTTCTGGAGCTCAGCCTCTGCTTTTACCAAGTGGTTTAGG 768
Query 366 AGGTGCTTATCTCTTGCAAACCGGAAATGGTCACAACATTGCGGTTGCAAAGCCAGTAGA 425
|||||| |||||||||||||||| ||| ||| ||||||||||||||||||| ||||| ||
Sbjct 769 AGGTGCATATCTCTTGCAAACCGAAAAAGGTAACAACATTGCGGTTGCAAAACCAGTCGA 828
Query 426 TGAAGAGCCTTTAGCTTTTAACAATCCTAAAGGATCTGGTGGATTGACGCTAGGACAACC 485
|||||||||||||||||| |||||||||||||||||||| || || || || || |||||
Sbjct 829 TGAAGAGCCTTTAGCTTTCAACAATCCTAAAGGATCTGGCGGTTTAACACTCGGGCAACC 888
Query 486 AGGGATGAAACGGTCAATCCGCGTTGGTGAAAGCGGAATCCGTGAATTGGCTGCTTACCT 545
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AGGCATGAAACGGTCTATCCGCGTTGGTGAAAGCGGAATCCGTGAATTGGCTGCTTACCT 948
Query 546 TTTAGACCACCAAGGCTTTTCCGGGGTTCCACCAACTGCATTGGTCAGAATCTCGCATGT 605
|||||||||||||||||||||| | ||||||||||| ||||||||||||||||| |||||
Sbjct 949 TTTAGACCACCAAGGCTTTTCCAGTGTTCCACCAACCGCATTGGTCAGAATCTCTCATGT 1008
Query 606 TCCGTTCCAT-ATCAGTGATAGTGATCACGCCGCCTGTAAAGTTGCTTCTTTGCAACGAT 664
|||||||||| | ||| | ||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1009 TCCGTTCCATGA-CAGAGGTAGTGATCACGCCGCCTATAAAGTTGCCTCTTTGCAACGAT 1067
Query 665 TTGTGGGTCATGACTTTGATGCAGGAGAGCTTGGATCAGGAAGCTTCACGGTTGGATCTG 724
||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||| |
Sbjct 1068 TTGTGGGTCATGATTTTGATGCAGGAGAGCTTGGACCAGGAAGCTTCACGGTTGTATCGG 1127
Query 725 TCCATAGGATTGGCATACTTGATGTGAGAGTCTTGAACCTTGACAGACACGCTGGAAACA 784
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1128 TCCATAGGATTGGTATACTTGATGTGAGAGTCTTGAACCTTGACAGACACGCCGGAAACA 1187
Query 785 TGTTGGTGAAGAAGATACATGACCAAGATGAGAGTACTTGTTATAATGGAGTTGGAGCCG 844
||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||| |
Sbjct 1188 TGTTGGTGAAGAAGATACATGACCAAGATGAGACTACTTGTTCTAACGGAGTTGGAGCTG 1247
Query 845 CTGAGCTCGTGCCTATAGATCATGGTCTTTGCCTACCCGAATGCCTTGACGATCCTTATT 904
| ||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 1248 CAGAGCTTGTGCCTATAGATCATGGTCTTTGCCTACCTGAATGCCTCGATGATCCTTATT 1307
Query 905 TCGAATGGCTTAACTGGCCTCAAGCTTCGGTGCCATTCACCGACACTGAGCTTCAGTATA 964
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1308 TCGAATGGCTTAACTGGCCTCAAGCTTCGGTGCCATTCACCGACATTGAGCTTCAGTATA 1367
Query 965 TATCAAACTTGGACCCTTTCAAAGACGCAGAGCTTTTGAGAACCGAACTAGGCTCAATAC 1024
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||
Sbjct 1368 TATCAAACTTGGACCCTTTCAAAGACGCAGAGCTTTTGAGAACAGAACTAGACTCTATAC 1427
Query 1025 AGGAATCTTCCCTACGGGTTCTCATCGTCTGCACGATATTCTTGAAACAAGCTGCTGGTG 1084
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||
Sbjct 1428 AGGAATCTTCCCTACGGGTTCTTATCGTCTGCACGATATTCTTGAAAGAAGCTGCTGCTG 1487
Query 1085 CAGGGCTTAGTCTTGCAGAGATAGGAGAGAAGATGACTCGGGACATCTGCAGAGGGGAAG 1144
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1488 CAGGGCTTAGTCTTGCAGAGATAGGAGAGAAGATGACTCGGGACATATGCAGAGGGGAAG 1547
Query 1145 AGAGTACTAGTGTGTTGGAGATTATTTGCAACAAAGCAAAAGCAAGCGCGGTTAGTGGAA 1204
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1548 AGAGTTCTAGTGTGTTGGAGATTCTTTGCAACAAAGCAAAAGCAAGCGCGGTTAGTGGAA 1607
Query 1205 CTGAC---GATGATGATTATAGTAGTGAATGGAATGAAGTAGAAGCAGAACTAGAGTGTG 1261
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1608 GTGACGATGATGATGATTATAGTAGTGAATGGAATGAAGTAGAAGCAGAGCTAGAGTGTG 1667
Query 1262 GAATTTTTCAGTTTGACGATGAAGTTGAATGCAAAGAGCTTCCAGATATGTTACAAGTGC 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 GAATTTTTCAGTTTGACGATGAAGTTGAATGCAAAGAGCTTCCAGATATGTTACAAGTGC 1727
Query 1322 CTTTATTTACAAGAGTTCCATCCATTGCTGCGAATCTATCCGCTCTCATGCGGTGTCCAC 1381
|| |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1728 CTATATTCACAAGAGTTCCATCCATTGCTGCCAATCTATCTGCTCTCATGCGGTGTCCAC 1787
Query 1382 CAAACCAGTGGATTACTACATGTGACACTAACAGAGAAGAGGACAGGAGAGATCGGAGTA 1441
||||||||||||||| ||||| ||||||||||| ||||||||| ||||||||||||||||
Sbjct 1788 CAAACCAGTGGATTAGTACATATGACACTAACATAGAAGAGGAAAGGAGAGATCGGAGTA 1847
Query 1442 TCGTGAGGAGCAAGAGTCACCCGATATGTGTGAATTATGATGAGAAAGAAGGTGTTCATT 1501
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1848 TCGTGAGGAGCAAGAGTCACCCGATATGTGTGAATTATGATGAGAAAGAAGGTGTTTATT 1907
Query 1502 TTGGGGACATGAGTGGAGATGAATGGGAGATGTTCTTGCATAGTTTCCAGATGCTTTTGC 1561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1908 TTGGGGACATGAGTGGAGATGAATGGGAGATGTTCTTGCATAGTTTCCAGATGCTTTTGC 1967
Query 1562 CAGAAGCACTTGAAGGCTCAACAAGCAAGGGGCCAAAGCCAAGATTTGGATCTTCCTGCA 1621
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |
Sbjct 1968 CAGAAGCACTTGAAGGCTCAACAAGCAAGGGACCAAAACCAAGATTTGGATCTTCTTGTA 2027
Query 1622 AATTCTAATGAAA 1634
|||||||| ||||
Sbjct 2028 AATTCTAAGGAAA 2040
> AT2G40850.1 | Symbols: ATPI4K GAMMA 1, PI4K GAMMA 1 | phosphoinositide
4-kinase gamma 1 | chr2:17051123-17053292 FORWARD
LENGTH=2080
Length=2080
Score = 736 bits (398), Expect = 0.0
Identities = 854/1066 (80%), Gaps = 63/1066 (6%)
Strand=Plus/Plus
Query 247 GCTCCGCGCATTGAGATTCTCGGTGGTCAAAGAGTCCCCACTGTACGCGCCCTTGTAGCT 306
||||| || ||||||||||| ||||| || ||||| ||||| || || || ||||| |||
Sbjct 639 GCTCCACGGATTGAGATTCTTGGTGGACAGAGAGTGCCCACCGTTCGTGCTCTTGTGGCT 698
Query 307 GAAGTAACCATAGCTATGGTTTCTGGAGCTCAGCCTTTGCTTTTACCAAGTGGTTTAGGA 366
|| || ||||| ||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 699 GAGGTGACCATGGCTATGGTTTCTGGAGCTCAGCCTTTGCTTTTACCAAGTGGCATGGGA 758
Query 367 GGTGCTTATCTCTTGCAAACCGGAAATGGTCACAACATTGCGGTTGC-AAAGCCAGTAGA 425
|||||||||||||||||||||||||| || || |||||||| || || ||| || || ||
Sbjct 759 GGTGCTTATCTCTTGCAAACCGGAAAGGGACATAACATTGCTGTGGCTAAA-CCGGTTGA 817
Query 426 TGAAGAGCCTTTAGCTTTTAACAATCCTAAAG-GATCTGGTGGATT-GACGCTAGGACAA 483
|||||||||| ||||||| || ||||||||| | ||||| ||| || ||| || |||
Sbjct 818 TGAAGAGCCTCTAGCTTTCAATAATCCTAAAAAG-TCTGGAA-ATTTGATGCTCGGGCAA 875
Query 484 CCAGGGA-TGAAACGGTCAAT-CCGCGTTGGTGAAAGCGGA-ATCCGTGAATTGGCTGCT 540
|| |||| |||||| ||||| || ||||| || | ||| ||| | ||| | |||||
Sbjct 876 CC-GGGAATGAAACATTCAATTCCT-GTTGGCGAGA-CGGGTATCAGAGAACTAGCTGCC 932
Query 541 TACCTTTTAGACCACCAAGGCTTTTCCGGGGTTCCACCAACTGCATTGGTCAGAATCTCG 600
|||||||| || ||||||||||||| || ||||||||||| |||||||| || |||||
Sbjct 933 TACCTTTTGGATTACCAAGGCTTTTCTGGTGTTCCACCAACAGCATTGGTTAGTATCTCA 992
Query 601 CATGTTCCGTTCCATATCAGTGATAG--TGATCA--CGCCGCC-TG---TA-AAG-TTGC 650
||||| || |||||| |||||||| | | || | || || || || ||| ||||
Sbjct 993 CATGTCCCATTCCATGTCAGTGAT-GCCTTCTCTTTCTCCTCCATGCCCTATAAGGTTGC 1051
Query 651 TTCTTTGCAACGATTTGTGGGTCATGACTTTGATGCAGGAGAGCTTGGATC-AGGAAGCT 709
||| ||||| ||||||||||||||||| |||||||||||||| |||| || ||||||||
Sbjct 1052 TTCCTTGCAGCGATTTGTGGGTCATGATTTTGATGCAGGAGAA-TTGGGTCCAGGAAGCT 1110
Query 710 TCACGGTTGGATCTGTCCATAGGATTGGCATACTTGATGTGAGAGTCTTGAACCTTGACA 769
|||||| | || || ||||||||||| ||||||||||||||| || ||||||||||||
Sbjct 1111 TCACGGCTACTTCGGTTCATAGGATTGGAATACTTGATGTGAGACTCCTGAACCTTGACA 1170
Query 770 GACACGCTGGAAACATGTTGGTGAAGAAGATACATGACCAAGATGAGAGTACTTGTTATA 829
|||| |||||||| ||| | ||||||| ||| |||| || | || || ||| |||
Sbjct 1171 GACATGCTGGAAATATGCTAGTGAAGA-GATG--TGACAAAAAGGA-AG--CTT---ATA 1221
Query 830 ATGGAGTTGG-AGCCGCTGAGCTCGTGCCTATAGATCATGGTCTTTGCCTACCC-GAATG 887
|| || |||| | |||||||||| |||||||| ||||||||||| ||||| ||| |||||
Sbjct 1222 ATCGACTTGGGA-CCGCTGAGCTTGTGCCTATTGATCATGGTCTCTGCCT-CCCTGAATG 1279
Query 888 CCTTGACGATCCTTA-TTTCGAATGGCTTAACTGGCCTCAAGCTTCGGTGCCATTCACCG 946
||| || |||||||| ||| |||||||| |||||||||||||||| ||| |||||| | |
Sbjct 1280 CCTAGATGATCCTTACTTT-GAATGGCTAAACTGGCCTCAAGCTTTGGTTCCATTCTCTG 1338
Query 947 ACACTGAGCTTCAGTATATATCAAA-CTTGGACCCTTTCAAAGACGCAGAGCTTTTGAGA 1005
||||||| || | |||||||| || |||| ||||||||||||||||||| ||| |||||
Sbjct 1339 ACACTGAACTGGATTATATATCCAATCTTG-ACCCTTTCAAAGACGCAGAACTTCTGAGA 1397
Query 1006 ACCGAACTAGGCTCAATACAGGAATCTTCCCTACGGGTTCTCATCGTCTGCAC-GATATT 1064
|| |||||| ||| | | ||||||| || || |||| ||| |||||||||| | | ||
Sbjct 1398 ACTGAACTACACTCTCTGCCGGAATCTGCCATAAGGGTCCTCGTCGTCTGCACAGTT-TT 1456
Query 1065 CTTGAAACAAGCTGCTGGTGCAGGGCT-TAGTCTTGCAGAGATAGGAGAGAAGATGACTC 1123
||| |||||||| || | ||||||||| | |||| || |||||||| |||||||||||||
Sbjct 1457 CTTAAAACAAGCAGCAGCTGCAGGGCTCT-GTCTCGCGGAGATAGGCGAGAAGATGACTC 1515
Query 1124 GGGACATCTGCAGAGGG-GAAGAGAGTA-CTAGTGTGTTGGAGATTATTTGCAACAAAGC 1181
|||| ||| || |||| ||||||||| | ||| |||| |||| | |||| ||||||
Sbjct 1516 GGGATTTCTCCA-AGGGTGAAGAGAGTTTC-AGTCTGTTAGAGACCCTCTGCACCAAAGC 1573
Query 1182 AAAAGCAAGCG-CGGTTAGTGGAACT-GACGATGA---TGATTATAGT-AGTGAATGGAA 1235
|||||||| | | || | ||| | ||| || ||| |||||| | |||| ||||
Sbjct 1574 GAAAGCAAGTGTCT-TTGGCAAAACAAG-CGAAGACAGTGACTATAGTCA-TGAA-GGAA 1629
Query 1236 -TGAAGTAGAAG-CAGAACTAGAGTGTGGAATTTTTCAGTTTGACG 1279
|||||| ||| |||| || |||||||||| ||| |||||||||
Sbjct 1630 ATGAAGT-GAACACAGAGTTACAGTGTGGAATGTTTAAGTTTGACG 1674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81676286715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5