BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938632

Length=245
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G56700.1 | Symbols: FAR6 | fatty acid reductase 6 | chr3:209...   134    5e-31


> AT3G56700.1 | Symbols: FAR6 | fatty acid reductase 6 | chr3:20999731-21002058 
REVERSE LENGTH=1584
Length=1584

 Score =  134 bits (72),  Expect = 5e-31
 Identities = 162/200 (81%), Gaps = 28/200 (14%)
 Strand=Plus/Plus

Query  1    TTGGGAAGATCTTCCTTCTGATGAGATCCAGGGATCAAGAATCAGCCAACAAGAGACTCT  60
            |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct  329  TTGGGAAGATCTTCCTTCTGATGAGATCCAAGGATCAAGAATCAGCAAACAAGAGACTCT  388

Query  61   ATGATGAG--C-T----TC---T--G---AAGC-----AA--A--TGCACGGGAGTTCTT  96
            | ||||||  | |    ||   |  |   ||||     ||  |  |||| ||||| ||||
Sbjct  389  ACGATGAGATCATAAGCTCGGATCTGTTCAAGCTTCTGAAGCAAATGCATGGGAGCTCTT  448

Query  97   ACGAAGCCTTCACGAAGAGCCAGTTGGAT-CCAGTAATTGGAGACATTGTAG-AAGACAA  154
            ||||||| |||| ||||||  ||||| || ||||||||||||||||||| || |||||||
Sbjct  449  ACGAAGCTTTCATGAAGAGAAAGTTG-ATTCCAGTAATTGGAGACATTG-AGGAAGACAA  506

Query  155  TCTAGGGATCGAATCTGAAA  174
            |||||||||| |||||||||
Sbjct  507  TCTAGGGATCAAATCTGAAA  526



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11109172529


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5