BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938635
Length=923
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56740.1 | Symbols: | Ubiquitin-associated (UBA) protein | ... 1561 0.0
AT2G41160.1 | Symbols: | Ubiquitin-associated (UBA) protein | ... 760 0.0
> AT3G56740.1 | Symbols: | Ubiquitin-associated (UBA) protein
| chr3:21015371-21018157 FORWARD LENGTH=1416
Length=1416
Score = 1561 bits (845), Expect = 0.0
Identities = 899/925 (97%), Gaps = 4/925 (0%)
Strand=Plus/Plus
Query 1 TCCTCTGTTCACCCGACGAAGATGAACGGCGGTCCCTCCGGTTTCCATAATGCTCCGGTA 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCCTCTGTTCACCCAACGAAGATGAACGGCGGTCCCTCCGGTTTCCATAATGCTCCGGTA 299
Query 61 ACCAAAGCCTTCGTTATCACGAGCGCCCTTTTCACTGTCTTCTTCGGGATCCAAGGTCGT 120
|| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 300 ACGAAAGCCTTCGTTATTACGAGCGCTCTTTTCACTGTCTTCTTCGGGATCCAAGGTCGT 359
Query 121 TCTTCTAAGCTCGGGTTGTCTTACCAGGATATTTTTGAGAAGTTTCGGATATGGAAGTTA 180
|||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 360 TCTTCTAAGCTCGGTTTGTCTTACCAGGACATTTTTGAGAAATTTCGGATATGGAAGTTA 419
Query 181 ATCATGTCGACTTTTGCCTTCTCCTCCACACCAGAATTGATGTTCGGATTGTATTTGTTA 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 ATCATGTCCACTTTTGCCTTCTCCTCCACACCAGAATTGATGTTCGGATTGTATTTGCTA 479
Query 241 TACTACTTCCGAGTTTTTGAGAGACAGATTGGCTCAAATAAGTACTTGGTTTTTATCTTG 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 480 TACTACTTCCGAGTTTTTGAGAGACAGATTGGCTCAAATAAGTACTCGGTTTTTATCTTG 539
Query 301 TTCTCAGGGACTGTATCTCTATTACTCGAGGTCATTTTGTTATCACTGCTTAAAGATACC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTCTCAGGGACTGTATCTCTATTACTCGAGGTCATTTTGTTATCACTGCTTAAAGATACC 599
Query 361 ACAGCAAACTTACTAACCTCTGGACCATACGGCCTGATATTTGCTTCGTTTATACCCTTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACAGCAAACTTACTAACCTCTGGACCATACGGCCTGATATTTGCTTCGTTTATACCCTTC 659
Query 421 TACTTGGACATTCCTGTTTCAACGAGGTTTCGCGTATTTGGTGTCAACTTCTCTGATAAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TACTTGGACATTCCTGTTTCAACGAGGTTTCGCGTATTTGGTGTCAACTTCTCTGATAAG 719
Query 481 TCATTCATATATCTCGCAGGAGTTCAGCTTCTACTATCTTCTTGGAAAAGATCCATCTTT 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 720 TCATTCATATATCTCGCAGGAGTGCAGCTTCTACTATCTTCTTGGAAAAGATCCATCTTT 779
Query 541 CCTGGAATTTGCGGCATAATTGCCGGTTCCTTGTATCGTTTGAACATCCTTGGCATCCGC 600
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 780 CCTGGAATTTGCGGCATAATTGCGGGTTCCTTGTATCGTTTGAACATCCTTGGCATCCGC 839
Query 601 AAGGCAAAGTTCCCCGAGTTTGTGGCTTCATTCTTTTCGCGGCTTTCTTTTCCCTCTTTC 660
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 840 AAGGCAAAGTTCCCTGAGTTTGTGGCTTCGTTCTTCTCGCGGCTTTCTTTTCCCTCTTTC 899
Query 661 GGTAACTCTCCTCCTCCAGCACCAAGCAGAAACATCGTTGGGACTATATCACCTAACACA 720
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 900 GGTAACTCTCCTCCTCCAGCACCAAGCAGGAACATCGTTGGGACTATATCACCTAACACA 959
Query 721 GGGCGTCGAGCAGAGAGATCTCAGCCAGCTCCAGT-GCCGTCAAGTGTGGAGCCATCTGA 779
|||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct 960 GGGCGTCGAGCAGAGAGATCTCAGCCAGCTCC-GTTGCCCTCAAGTGTGGAGCCATCTGA 1018
Query 780 GGAAGCCATAACTACATTGGTATCAATGGGATTCGACAGAAACGCAGCGAGACAGGCACT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1019 GGAAGCCATAACTACATTGGTATCAATGGGATTCGACAGAAACGCAGCGAGACAGGCGCT 1078
Query 840 TGTCCACGCCAGAAATGATGTCAACGCCGCCACAAACATCCTTCTCGAAGCACAATCCCA 899
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1079 TGTGCACGCCAGGAATGATGTCAACGCCGCCACAAACATCCTTCTCGAAGCACAGTCCCA 1138
Query 900 CTAA-TTGAAAAAGGGTTTTACTCT 923
|||| || ||||||| |||||||||
Sbjct 1139 CTAACTTAAAAAAGG-TTTTACTCT 1162
> AT2G41160.1 | Symbols: | Ubiquitin-associated (UBA) protein
| chr2:17156029-17158880 REVERSE LENGTH=1342
Length=1342
Score = 760 bits (411), Expect = 0.0
Identities = 750/910 (82%), Gaps = 38/910 (4%)
Strand=Plus/Plus
Query 4 TCTGTTCACCCGACGAAGATGAACGGCGGTCCCTCCGGTTTCCATAATGCTCCGGTAACC 63
|||||||| |||| ||||||||||| ||||| ||||||||| ||||||||||||| ||
Sbjct 176 TCTGTTCATCCGATTAAGATGAACGGAGGTCCTTCCGGTTTCAATAATGCTCCGGTCACG 235
Query 64 AAAGCCTTCGTTATCACGAGC-GCCCTTTTCACTGTCTTCTTCGGGATCCAAGGTCGTTC 122
||||||||||| ||| ||| | || ||||||||||| ||||||||||||| || ||||
Sbjct 236 AAAGCCTTCGTCATCGCGA-CTGCTCTTTTCACTGTGTTCTTCGGGATCCGGGGAGGTTC 294
Query 123 TTCTAAGCTCGGGTTGTCTTACCAGGATATTTTTGAGAAGTTTCGGATATGGAAGTTAAT 182
||| |||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 295 TTCCAAGCTCGGCTTATCTTACCAGGATATTTTTGAGAAGTTTCGGATTTGGAAGTTAAT 354
Query 183 CATGTCGACTTTTGCCTTCTCCTCCACACCAGAATTGATGTTC-GGATTGTATTTGTTAT 241
|| ||| ||||||||||||| |||||| | ||||| | ||| || || |||||| |||
Sbjct 355 TATATCGGCTTTTGCCTTCTCGTCCACAACTCAATTGCT-TTCTGGCTTATATTTGCTAT 413
Query 242 ACTACTTCCGAGTTTTTGAGAGACAGATTGGCTCAAATAAGTACTT-GGTTTTTATCTTG 300
||| ||||||||| ||||||||||||||||| ||||||||||| || |||||| |||||
Sbjct 414 ACTTCTTCCGAGTCTTTGAGAGACAGATTGGTTCAAATAAGTA-TTCGGTTTTCATCTTC 472
Query 301 TTCTCAGGGACT-GTATCTCTATTACTCGAGGTCATTTTGTTATCACTG-CTTAAAGATA 358
||||| || | | ||||| ||| |||| ||| ||||||||||||| || || ||||||
Sbjct 473 TTCTCTGG-ATTTGTATCACTAATACTAGAGACCATTTTGTTATCATTGACT-AAAGAT- 529
Query 359 CC-ACAGCAAACTTACTAACCTCTGGACCATACGGCCT-GATATTTGCTTCGTTTATACC 416
|| || |||||| |||| || ||||||||||||| ||| | |||| ||||| ||| ||||
Sbjct 530 CCTACTGCAAACCTACTGACATCTGGACCATACGCCCTCG-TATTCGCTTCTTTTGTACC 588
Query 417 CTTCTACTTGGACATTCCTGTTTCAACGAGGTTTCGCGTATTTGGTGTCAACTTCTCTGA 476
||||| |||||| ||||| ||| ||| ||||||| | ||||| || ||| ||||||||||
Sbjct 589 CTTCTTCTTGGATATTCCAGTTACAAAGAGGTTTGGTGTATTGGGCGTCCACTTCTCTGA 648
Query 477 TAAGTCATTCATATATCTCGCAGGAGTTCAGCTTCTACTATCTTCTTGGAAAAGATCCAT 536
||| ||||||||||| || ||||| || |||||| ||||||| || |||||||| |||||
Sbjct 649 TAAATCATTCATATACCTTGCAGGTGTCCAGCTTTTACTATCATCATGGAAAAGGTCCAT 708
Query 537 CTTTCCTGGAATTTGCGGCATAATTGCCGGTTCCTTGTATCGTTTGAACATCCTTGGCAT 596
|||| ||||||||||||| |||||||| |||||||||||||| ||||||||| |||| ||
Sbjct 709 CTTTACTGGAATTTGCGGTATAATTGCTGGTTCCTTGTATCGGTTGAACATCTTTGGTAT 768
Query 597 CCGCAAGGCAAAGTTCCCCGAGTTTGTGGCTTCATTCTTTTCGCGGCTTTCTTTTCCCTC 656
||||||||||||||||| ||||| ||||||| || || || ||| |||| || |||||
Sbjct 769 TCGCAAGGCAAAGTTCCCGGAGTTCATGGCTTCGTTATTCTCCCGGTTTTCCTTACCCTC 828
Query 657 TTTCG-GTAACTC-TCCTCCTCCAGCACCAAGCAGAAACATCGTTGGGACTATATCACCT 714
|| | | | | | | || || | ||||||| | | | | || || ||||
Sbjct 829 CTT-GAGCAGC-CAT--TC-TCAACCACCAAG-A-A------G--G--AC-AT--CACCC 868
Query 715 AACACAGGGCGTCGAGCAGAGAGATCTCAGCCAGCTCCAGTGCCGTCAAGTGTGGAGCCA 774
||| ||| || | ||||| |||| || | | ||||||| ||||||||| | ||||||
Sbjct 869 AACTTAGGTCGCCAAGCAGTGAGAGCTTATCGAGCTCCAATGCCGTCAACTACAGAGCCA 928
Query 775 TCTGAGGAAGCCATAACTACATTGGTATCAATGGGATTCGAC-AGAAACGCAGCGAGACA 833
|| |||||||||||| |||| |||||||| |||||||| ||| |||| |||||||||||
Sbjct 929 TCAGAGGAAGCCATAGCTACTTTGGTATCTATGGGATTTGACCAGAAT-GCAGCGAGACA 987
Query 834 GGCACTTGTCCACGCCAGAAATGATGTCAACGCCGCCACAAACATCCTTCTCGAAGCACA 893
||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 988 GGCGCTTGTACACGCCAGAAATGATGTCAACGCTGCCACCAACATCCTTCTTGAAGCACA 1047
Query 894 ATCCCACTAA 903
|| ||||||
Sbjct 1048 CTCTCACTAA 1057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45110264006
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5