BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938640
Length=575
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56800.1 | Symbols: CAM3, acam-3 | calmodulin 3 | chr3:21034... 965 0.0
AT3G43810.1 | Symbols: CAM7 | calmodulin 7 | chr3:15664371-1566... 497 4e-140
AT2G41110.2 | Symbols: CAM2 | calmodulin 2 | chr2:17140229-1714... 477 5e-134
AT2G27030.3 | Symbols: CAM5 | calmodulin 5 | chr2:11532004-1153... 464 4e-130
AT5G37780.3 | Symbols: CAM1, TCH1, ACAM-1 | calmodulin 1 | chr5... 383 1e-105
> AT3G56800.1 | Symbols: CAM3, acam-3 | calmodulin 3 | chr3:21034537-21036077
REVERSE LENGTH=1051
Length=1051
Score = 965 bits (522), Expect = 0.0
Identities = 561/579 (97%), Gaps = 5/579 (1%)
Strand=Plus/Plus
Query 1 GAAAAGGAGAAGaaaaaaaCAATGGCGGATCAGCTCACCGACGATCAGATCTCTGAGTTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 GAAAAGGAGAAGAAAAAAACAATGGCGGATCAGCTCACCGACGATCAGATCTCTGAGTTT 196
Query 61 AAGGAAGCTTTCAGCTTATTCGACAAGGATGGTGATGGTTGCATTACCACCAAGGAGCTT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 AAGGAAGCTTTCAGCTTATTCGACAAGGATGGTGATGGTTGCATTACCACCAAGGAGCT- 255
Query 121 GGG-ACTGTGATGCGTTCCCTTGGACAAAACCCAACCGAAGCAGAGCTTCAAGACATGAT 179
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 GGGTACTGTGATGCGTTCCCTTGGACAAAACCCAACCGAAGCAGAGCTTCAAGACATGAT 315
Query 180 CAATGAAGTGGACGCTGATGGTAACGGTACCATTGATTTCCCAGAGTTCTTGAACCTCAT 239
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 316 CAACGAAGTGGATGCTGATGGTAACGGTACCATTGATTTCCCAGAGTTCTTGAACCTTAT 375
Query 240 GGCTCGTAAGATGAAGGACACCGACTCTGAGGAAGAGCTCAAGGAAGCATTCCGGGTTTT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 GGCTCGTAAGATGAAGGACACCGACTCTGAGGAAGAGCTCAAGGAAGCATTCCGGGTTTT 435
Query 300 TGACAAGGACCAGAACGGTTTCATTTCAGCCGCTGAGCTTCGTCATGTGATGACAAACCT 359
||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||
Sbjct 436 CGACAAGGACCAGAACGGTTTCATCTCAGCAGCTGAGCTCCGCCATGTGATGACAAACCT 495
Query 360 TGGTGAGAAGCTTACTGATGAAGAAGTTGATGAGATGATCAAGGAAGCTGATGTTGATGG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 TGGTGAGAAGCTTACTGATGAAGAAGTTGATGAGATGATCAAGGAAGCTGATGTTGATGG 555
Query 420 TGATGGTCAGATTAACTATGAAGAGTTTGTTAAGGTCATGATGGCTAAGTGATGCGGTTT 479
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 556 TGATGGTCAGATTAACTACGAAGAGTTTGTTAAGGTCATGATGGCTAAGTGATGCTGTTT 615
Query 480 TGGA-CCAAACAATGGCTCTA-AA-CTTGGTTTGCATCTCTTACATATAAATTCTTATGT 536
| || |||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 616 TAGAACCAAACAATGGCTCTATAAACTTGGTTTGCATCTCTTACATATAAATTCTTATGT 675
Query 537 TATGTTCTATAATTTTTATTCATGGGACTCAAGGTCTGT 575
|||||||||||||||||||||||||||||| |||| |||
Sbjct 676 TATGTTCTATAATTTTTATTCATGGGACTCGAGGTATGT 714
> AT3G43810.1 | Symbols: CAM7 | calmodulin 7 | chr3:15664371-15666460
REVERSE LENGTH=803
Length=803
Score = 497 bits (269), Expect = 4e-140
Identities = 402/467 (86%), Gaps = 6/467 (1%)
Strand=Plus/Plus
Query 8 AGAAGa-aaaaaaCAATGGCGGATCAGCTCACCGACGATCAGATCTCTGAGTTTAAGGAA 66
|||||| |||||| ||||||||||||||| ||||| || |||||||| ||||| ||||||
Sbjct 92 AGAAGACAAAAAA-AATGGCGGATCAGCTAACCGATGACCAGATCTCCGAGTTCAAGGAA 150
Query 67 GCTTTCAGCTTATTCGACAAGGATGGTGATGGTTGCATTACCACCAAGGAGCTTGGGACT 126
||||| ||| |||||||||| || || |||||||| || ||||| |||||||||||||||
Sbjct 151 GCTTTTAGCCTATTCGACAAAGACGGAGATGGTTGTATCACCACAAAGGAGCTTGGGACT 210
Query 127 GTGATGCGTTCCCTTGGACAAAACCCAACCGAAGCAGAGCTTCAAGACATGATCAATGAA 186
|||||| | || ||||| || ||||| || ||||| ||||| || ||||||||||| |||
Sbjct 211 GTGATGAGATCACTTGGGCAGAACCCGACAGAAGCCGAGCTCCAGGACATGATCAACGAA 270
Query 187 GTGGACGCTGATGGTAACGGTACCATTGATTTCCCAGAGTTCTTGAACCTCATGGCTCGT 246
||||| || || || ||||| || || ||||||||||||||| ||||||| ||||| |||
Sbjct 271 GTGGATGCAGACGGGAACGGGACAATAGATTTCCCAGAGTTCCTGAACCTAATGGCACGT 330
Query 247 AAGATGAAGGACACCGACTCTGAGGAAGAGCTCAAGGAAGCATTCCGGGTTTTTGACAAG 306
|||||||| ||||| || || ||||||||||| |||||||| ||| ||||||||||||||
Sbjct 331 AAGATGAAAGACACTGATTCAGAGGAAGAGCTTAAGGAAGCCTTCAGGGTTTTTGACAAG 390
Query 307 GACCAGAACGGTTTCATTTCAGCCGCTGAGCTTCGTCATGTGATGACAAACCTTGGTGAG 366
||||||||||||||||| || || |||||||||||||| ||||||||||| ||||| |||
Sbjct 391 GACCAGAACGGTTTCATCTCGGCGGCTGAGCTTCGTCACGTGATGACAAATCTTGGGGAG 450
Query 367 AAGCTT-ACTGATGAAGAAGTTGATGAGATGATCA-AGGAAGCTGATGTTGATGGTGATG 424
||| || || ||||| ||||| |||||||||||| || | ||||| || ||||||||||
Sbjct 451 AAG-TTGACGGATGAGGAAGTCGATGAGATGATCCGAG-AGGCTGACGTCGATGGTGATG 508
Query 425 GTCAGATTAACTATGAAGAGTTTGTTAAGGTCATGATGGCTAAGTGA 471
||||||| |||||||||||||| || || ||||||||||| ||||||
Sbjct 509 GTCAGATCAACTATGAAGAGTTCGTCAAAGTCATGATGGCAAAGTGA 555
> AT2G41110.2 | Symbols: CAM2 | calmodulin 2 | chr2:17140229-17141393
FORWARD LENGTH=837
Length=837
Score = 477 bits (258), Expect = 5e-134
Identities = 337/376 (90%), Gaps = 2/376 (1%)
Strand=Plus/Plus
Query 97 GGTTGCATTACCACCAAGGAGCTTGGGACTGTGATGCGTTCCCTTGGACAAAACCCAACC 156
|||||||||||||| ||||||||||| || |||||||||||||| || ||||||||||||
Sbjct 262 GGTTGCATTACCACAAAGGAGCTTGGTACCGTGATGCGTTCCCTCGGTCAAAACCCAACC 321
Query 157 GAAGCAGAGCTTCAAGACATGATCAATGAAGTGGACGCTGATGGTAACGGTACCATTGAT 216
||||| |||||||| ||||||||||| ||||| || || ||||||||||| |||||||||
Sbjct 322 GAAGCTGAGCTTCAGGACATGATCAACGAAGTTGATGCGGATGGTAACGGAACCATTGAT 381
Query 217 TTCCCAGAGTTCTTGAACCTCATGGCTCGTAAGATGAAGGACACCGACTCTGAGGAAGAG 276
||||| |||||||||||||| |||||| | || ||||||||||| ||||||||||||||
Sbjct 382 TTCCCGGAGTTCTTGAACCTAATGGCTAGGAAAATGAAGGACACTGACTCTGAGGAAGAA 441
Query 277 CTCAAGGAAGCATTCCGGGTTTTTGACAAGGACCAGAACGGTTTCATTTCAGCCGCTGAG 336
||||||||||| ||| | ||||| ||||| ||||||||||||||||| ||||| |||||
Sbjct 442 CTCAAGGAAGCTTTCAGAGTTTTCGACAAAGACCAGAACGGTTTCATCTCAGCTGCTGA- 500
Query 337 CTT-CGTCATGTGATGACAAACCTTGGTGAGAAGCTTACTGATGAAGAAGTTGATGAGAT 395
|| | ||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 501 ATTGAGACATGTGATGACTAACCTCGGCGAGAAGCTTACTGATGAAGAAGTTGATGAGAT 560
Query 396 GATCAAGGAAGCTGATGTTGATGGTGATGGTCAGATTAACTATGAAGAGTTTGTTAAGGT 455
||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 561 GATTAAGGAAGCTGATGTTGATGGTGATGGTCAGATCAACTACGAAGAGTTTGTGAAGGT 620
Query 456 CATGATGGCTAAGTGA 471
|||||||||||||||
Sbjct 621 TATGATGGCTAAGTGA 636
Score = 137 bits (74), Expect = 9e-32
Identities = 94/103 (91%), Gaps = 3/103 (3%)
Strand=Plus/Plus
Query 1 GAAAAGGAGAAGaaaaaaaCAATGGCGGATCAGCTCACCGACGATCAGATCTCTGAGTTT 60
||||| || ||| ||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 132 GAAAA-GAAAAG-AAAAAACAATGGCGGATCAGCTCACAGACGATCAGATCTCAGAATTC 189
Query 61 AAGGAAGCTTTCAGCTTATTCGACAAGGATGGTGATGGT-TGC 102
|||||||| |||||||||||||||||||||||||||||| |||
Sbjct 190 AAGGAAGCCTTCAGCTTATTCGACAAGGATGGTGATGGTATGC 232
> AT2G27030.3 | Symbols: CAM5 | calmodulin 5 | chr2:11532004-11534333
FORWARD LENGTH=768
Length=768
Score = 464 bits (251), Expect = 4e-130
Identities = 392/459 (85%), Gaps = 13/459 (3%)
Strand=Plus/Plus
Query 16 aaaaCAATGGCGGATCAGCTCACCGACGATCAGATCTCTGAGTTTAAGGAAGCTTTCAG- 74
|||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 61 AAAA-AATGGCAGATCAGCTCACCGATGATCAGATCTCTGAGTTCAAGGAAGCTTTTAGC 119
Query 75 CTTATTCGACAAGGATGGTGATGGTTGCATTACCACCAAGGAGCTTGGGACTGTGATGCG 134
||| |||||||| || || ||||||||||| || || || ||||| || || |||||| |
Sbjct 120 CTT-TTCGACAAAGACGGAGATGGTTGCATCACAACGAAAGAGCTAGGAACAGTGATGAG 178
Query 135 TTCCCTT-GGACAAAACCCAACCGAAGCAGAGCTT-CAAGACATGATCAATGAAGTGGAC 192
| | || || ||||| ||||| ||||||||| || ||||| ||||| || ||||| ||
Sbjct 179 AT-CATTAGGTCAAAATCCAACAGAAGCAGAG-TTACAAGATATGATAAACGAAGTAGAT 236
Query 193 GCTGATGGTAACGGTACCATTGATTTCCCAGAG-TTCTTGAACCTCATGGCTCGTAAGAT 251
|||||||||||||| ||||| || ||||| ||| ||| ||||||| |||||| | |||||
Sbjct 237 GCTGATGGTAACGGAACCATAGACTTCCCTGAGTTTC-TGAACCTAATGGCTAGGAAGAT 295
Query 252 GAAGGACACCGACTCTGAGGAAGAGCTCAAGGAAGCATTCCGGGTTTTTGACAAGGACCA 311
||||||||| |||||||| ||||||||||| ||||| ||| ||||||| || ||||||||
Sbjct 296 GAAGGACACTGACTCTGAAGAAGAGCTCAAAGAAGCTTTCAGGGTTTTCGATAAGGACCA 355
Query 312 GAACGGTTTCATTTCAGCCGCTGAGCTT-CGTCATGTGATGACAAACCTTGGTGAGAAGC 370
|||||||||||| || || |||||| || | ||||| |||||||| ||||||||||||
Sbjct 356 GAACGGTTTCATCTCGGCAGCTGAG-TTAAGACATGTAATGACAAATCTTGGTGAGAAG- 413
Query 371 TT-ACTGATGAAGAAGTTGATGAGATGATCAAGGAAGCTGATGTTGATGGTGATGGTCAG 429
|| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 414 TTAACTGATGAAGAAGTTGATGAGATGATCAAAGAAGCTGATGTTGATGGAGATGGTCAG 473
Query 430 ATTAACTATGAAGAGTTTGTTAAGGTCATGATGGCTAAG 468
|| || |||||||||||||| || || |||||||| |||
Sbjct 474 ATCAATTATGAAGAGTTTGTCAAAGTTATGATGGCAAAG 512
> AT5G37780.3 | Symbols: CAM1, TCH1, ACAM-1 | calmodulin 1 | chr5:15004527-15006205
REVERSE LENGTH=858
Length=858
Score = 383 bits (207), Expect = 1e-105
Identities = 324/381 (85%), Gaps = 6/381 (2%)
Strand=Plus/Plus
Query 95 ATGGTTGCATTACCACCAAGGAGCTTGGG-ACTGTGATGCGTTCCCTTGGACAAAACCCA 153
|||||||||| || || || |||| |||| || || |||||||| || ||||||||||||
Sbjct 240 ATGGTTGCATCACAACAAAAGAGC-TGGGAACAGTTATGCGTTCACTAGGACAAAACCCA 298
Query 154 ACCGAAGCAGAGCTTCAAGACATGATCAATGAAGTGGACGCTGATGGTAACGGTACCATT 213
|| || || ||||| |||||||||||||| || || || || ||||| ||||| || ||
Sbjct 299 ACAGAGGCTGAGCTCCAAGACATGATCAACGAGGTTGATGCAGATGGAAACGGCACTATC 358
Query 214 GATTTCCCAGAGTTCTTGAACCTCATGGCT-CGTAAGATGAAGGACACCGACTCTGAGGA 272
|| ||||| |||||| ||||||| |||||| | |||||||| ||||| ||||| |||||
Sbjct 359 GACTTCCCCGAGTTCCTGAACCTGATGGCTAAG-AAGATGAAAGACACTGACTCCGAGGA 417
Query 273 AGAGCTCAAGGAAGCATTCCGGGTTTTTGACAAGGACCAGAACGGTTTCATTTCAGCCGC 332
|||||| || ||||| ||| ||||||| ||||| ||||||||||||||||| || || ||
Sbjct 418 AGAGCTAAAAGAAGCCTTCAGGGTTTTCGACAAAGACCAGAACGGTTTCATCTCCGCTGC 477
Query 333 TGAGCTTCGTCATGTGATGACAAACCTTGGTGAGAAGCTTACTGATGAAGAAGTTGATGA 392
|||||| || ||||||||||| || |||||||||||||| |||||||||||||| || ||
Sbjct 478 TGAGCTACGCCATGTGATGACCAATCTTGGTGAGAAGCTAACTGATGAAGAAGTGGAAGA 537
Query 393 GATGATCAAG-GAAGCTGATGTTGATGGTGATGGTCAGATTAACTATGAAGAGTTTGTTA 451
||||||| | || |||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 538 GATGATC-CGTGAGGCTGATGTTGATGGAGATGGTCAGATTAACTATGAAGAGTTTGTCA 596
Query 452 AGGTCATGATGGCTAAGTGAT 472
|| | ||||||||||||||||
Sbjct 597 AGATTATGATGGCTAAGTGAT 617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27628780850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5