BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938644
Length=1507
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56840.1 | Symbols: | FAD-dependent oxidoreductase family p... 2248 0.0
> AT3G56840.1 | Symbols: | FAD-dependent oxidoreductase family
protein | chr3:21044317-21046314 FORWARD LENGTH=1589
Length=1589
Score = 2248 bits (1217), Expect = 0.0
Identities = 1393/1475 (94%), Gaps = 23/1475 (2%)
Strand=Plus/Plus
Query 50 GAAGCACAAACCTGAAACGGCGGCGTTTAGCTTGATTAGG-CTCAGGAAGCTTGGGCTGC 108
|||||| |||||||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 3 GAAGCATAAACCTGAAACGGCGGCGTTTAGCTTGATTCGGCCTCTCGAAGCTTGGGCTGC 62
Query 109 --A---AAA-TAA----G--A-A-TAAGAAGATGCTTGCTTGTCTTGGTAGAAAATGGAT 154
| ||| || | | | |||||||||||| ||||||| ||||||||||||||
Sbjct 63 AAATGCAAACAAAGCCTGTAATACTAAGAAGATGCTACCTTGTCTGGGTAGAAAATGGAT 122
Query 155 GAGATTGTCAACGATGAATCTAAAACCAACCTGGAACTTCG-TAAACGCCGTTGACGCAA 213
|||||||||||||| ||||||||||||||| |||||||| | |||||| |||||||||||
Sbjct 123 GAGATTGTCAACGAGGAATCTAAAACCAACTTGGAACTT-GATAAACGTCGTTGACGCAA 181
Query 214 GTAGAACAATTGTGAGAGGAATAAGCGGTGGAGGAGCTGAAACGGTAGCTAAAGAGAGAG 273
||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 182 GTAAAACAATTGTGAGAGGAATAAGCGGT---GGAGCTGAAACGATAGCTAAAGAGAGAG 238
Query 274 TTGACACTGTCGTTATCGGTGCCGGAGTCGTGGGTTTAGCGGTGGCGCGTGAGCTCAGTC 333
||||||| || || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 239 TTGACACCGTAGTGATCGGTGCCGGAGTCGTAGGTTTAGCGGTGGCGCGTGAGCTCAGTC 298
Query 334 GCCGCGGTAGAGAAGTGCTAATCCTTGAAGCAGCCTCATCGTTCGGTACCGTGACGAGTT 393
|||||| |||||||| || ||||| || || || ||||||||||| |||||||||||||
Sbjct 299 TCCGCGGCAGAGAAGTTCTGATCCTCGACGCCGCATCATCGTTCGGCACCGTGACGAGTT 358
Query 394 CCCGCAACAGTGAAGTCGTCCACGCCGGAATCTATTATCCACCAAACTCTCTAAAGGCCA 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CCCGCAACAGTGAAGTCGTCCACGCCGGAATCTATTATCCACCAAACTCTCTAAAGGCCA 418
Query 454 AGTTTTGTGTAAGAGGGAGGGAATTGCTGTATAGGTACTGCTCAGAATATGAAATCCCTC 513
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 419 AGTTTTGTGTAAGAGGGAGGGAATTGCTGTATAAATACTGCTCTGAATATGAAATCCCTC 478
Query 514 ATAAGAAGATTGGTAAGCTTATCGTTGCTACGGGATCCTCTGAGATACCGAAATTGGATC 573
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 479 ATAAGAAGATTGGTAAGCTTATCGTTGCTACGGGATCCTCTGAGATACCGAAACTAGATC 538
Query 574 TATTGATGCATCTTGGAACTCAGAATGGAGTCTCGGGTCTAAGGATGTTGGATGGTTTTG 633
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 539 TATTGATGCATCTTGGAACTCAGAATAGAGTCTCGGGTCTAAGGATGTTGGAAGGTTTTG 598
Query 634 AAGCTATGAGAATGGAGCCACAGCTTCGTTGTGTTAAAGCATTGCTATCTCCTGAATCTG 693
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 599 AAGCTATGAGAATGGAGCCACAGCTTCGTTGTGTTAAAGCTTTGCTATCTCCTGAATCTG 658
Query 694 GGATTCTTGATTCACATTCCTTCATGTTATCTTTAGTGGAAAAGAGTTTTGATTTCATGG 753
| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 659 GCATTCTTGATACACATTCCTTCATGCTATCTTTAGTGGAAAAGAGTTTTGATTTCATGG 718
Query 754 TTTACAGGGATAACAACAACTTGAGACTACAGGGAGAAGCAGAGAACAATCACGCAACTT 813
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 719 TTTACAGGGATAACAACAACTTGAGACTACAGGGAGAAGCACAGAACAACCACGCAACTT 778
Query 814 TCTCATACAACACGGTGGTTTTAAACGGTCGTGTTGAAGAAAAGAAGATGCATTTGTTTG 873
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 779 TCTCGTACAACACGGTGGTTTTAAACGGTCGTGTTGAAGAAAAGAAGATGCATTTGTATG 838
Query 874 TTGCTGATACCAGATTCTCTGAATCTCAGTGTGAGGCAGAAGCACAGCTTGAGCTTATCC 933
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 839 TTGCTGATACCAGATTTTCTGAATCTCGGTGTGAGGCAGAAGCACAGCTTGAGCTTATCC 898
Query 934 CTAATCTCGTTGTTAACTCTGCGGGACTAGGTGCTCAAGCTCTAGCAAAGAGATTCCATG 993
||||||| |||||||||||||||||| |||||||||||||||||||||||||| | ||||
Sbjct 899 CTAATCTTGTTGTTAACTCTGCGGGATTAGGTGCTCAAGCTCTAGCAAAGAGACTACATG 958
Query 994 GCTTAGATCATCGATTTGTTCCTTCGTCTCACTATGCCCGTGGATGCTACTTTACACTAT 1053
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 959 GCTTAGATCATCGATTTGTTCCTTCGTCTCACTATGCTCGTGGATGCTACTTTACACTAT 1018
Query 1054 CAGGCACAAAGGCTCCGCCTTTTAATAAACTTGTGTATCCTATACCTGAGGAAGGAGGTC 1113
| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CGGGCATAAAGGCTCCACCTTTTAATAAACTTGTGTATCCTATACCTGAGGAAGGAGGTC 1078
Query 1114 TCGGTGTCCATGTCACTGTAGATTTGAACGGACTTGTTAAGTTTGGACCTGATGTAGAAT 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TCGGTGTCCATGTCACTGTAGATTTGAACGGACTTGTTAAGTTTGGACCTGATGTAGAAT 1138
Query 1174 GGATTGAATGCGCAGATGATACATCAAGCTTCCTCAACAAATTTGATTATTGTGTAAACC 1233
||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1139 GGATTGAATGCACAGATGATACATCAAGCTTCCTCAACAAGTTTGATTATCGTGTAAACC 1198
Query 1234 CACAACGAGCAGAGAAATTCTACCCAGAGATCAGAAAGTACTATCAGGATCTCAAAGATG 1293
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1199 CACAACGATCAGAGAAATTCTACCCAGAGATCAGAAAGTACTATCCGGATCTCAAAGATG 1258
Query 1294 GATCATTGGAACCCGGTTATTCAGGCATCCGTCCTAAGCTTTCCGGACCAAAACAGTCTC 1353
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1259 GATCATTGGAACCGGGTTATTCAGGCATCCGTCCTAAGCTTTCCGGGCCAAAACAGTCTC 1318
Query 1354 CTGCAGATTTTGTCATACAGGGAGAGGAGACTCATGGAGTTCCTGGTCTTGTTAATCTCT 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CTGCAGATTTTGTCATACAGGGAGAGGAGACTCATGGAGTTCCTGGTCTTGTTAATCTCT 1378
Query 1414 TTGGCATCGAATCACCTGGTTTAACTTCAAGCTTGGCTATTGCAGAACATATAGCAAACA 1473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TTGGCATCGAATCACCTGGTTTAACTTCAAGCTTGGCTATTGCAGAACATATAGCAAACA 1438
Query 1474 AACTT-TTGAGATGAATTTGAGTTAAAAAGTCTAC 1507
|| || |||||||||||||||||||||| || |||
Sbjct 1439 AA-TTCTTGAGATGAATTTGAGTTAAAA-GTTTAC 1471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74347007145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5