BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938645
Length=943
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56850.1 | Symbols: AREB3, DPBF3 | ABA-responsive element bi... 1456 0.0
> AT3G56850.1 | Symbols: AREB3, DPBF3 | ABA-responsive element
binding protein 3 | chr3:21046341-21048516 REVERSE LENGTH=1729
Length=1729
Score = 1456 bits (788), Expect = 0.0
Identities = 893/942 (95%), Gaps = 14/942 (1%)
Strand=Plus/Plus
Query 1 tttttt-tCCGCTAC-AAAGTTTATGGATTCTCAGAGGGGTATTGTTGAAGAAGCTAAAT 58
|||||| |||||||| |||| |||||||||||||||||||||||||||| |||||||||
Sbjct 600 TTTTTTGTCCGCTACAAAAGCCTATGGATTCTCAGAGGGGTATTGTTGAACAAGCTAAAT 659
Query 59 CTCAGTCCTTGAATAGACAAGGCTCTCTCTACAGCTTAACACTTGATGAGGTTCAAAATC 118
|||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 660 CTCAGTCCTTGAATAGGCAAAGCTCTCTTTACAGCTTAACACTTGATGAGGTTCAAAATC 719
Query 119 ACTTGGGGAGTTCTGGTAAAGCTCTGGGAAGCATGAACCTTGATGAGCTTTTGAAGAGTG 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ACTTGGGGAGTTCTGGTAAAGCTCTGGGAAGCATGAACCTTGATGAGCTTTTGAAGAGTG 779
Query 179 TGTGTTCTGTTGAAGCTAATCAGCCAACGTCTATGGCTGTCAATGGTGGA--A-CAGCTC 235
| |||||||||||||||||||||||| ||||||||||||||||||||||| | | ||||
Sbjct 780 TCTGTTCTGTTGAAGCTAATCAGCCATCGTCTATGGCTGTCAATGGTGGAGCAGCTGCTC 839
Query 236 AGGAGGGTCTTTCTCGCCAGGGAAGTTTGACTTTGCCACGGGATCTTAGCaaaaaaaCTG 295
|||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||
Sbjct 840 AGGAGGGTCTTTCTCGCCAGGGGAGTTTGACTTTGCCTCGGGATCTCAGCAAAAAGACTG 899
Query 296 TTGATGAGGTTTGGAAAGACATTCAGCAGAATAAGAATGGAGCTAGTGCTCATGAGAGGA 355
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 900 TTGATGAGGTTTGGAAAGACATTCAGCAGAATAAGAATGGAGGTAGTGCTCATGAGAGGA 959
Query 356 GAGATAAGCAGCCTACACTCGGGGAAATGACGCTTGAAGACTTGTTGTTGAAAGCAGGAG 415
| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 960 GGGATAAGCAGCCTACACTTGGGGAAATGACGCTTGAAGACCTGTTGTTGAAAGCAGGAG 1019
Query 416 TGGTGACTGAGACTATCCCTGGTTCGAACCATGATGGTCCTGGTGGTCCTATTGGTGGTG 475
|||| ||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 1020 TGGTCACTGAGACTATCCCTGGTTCGAACCATGATGGTCC---T-G-----TTGGTGGTG 1070
Query 476 GTAGTGCTGGTTCAGGTGCTGGTTTAGGGCAAAACATAACTCAAGTTGGCCCATGGGTTC 535
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1071 GTAGTGCTGGTTCAGGTGCTGGTTTAGGGCAAAACATTACTCAAGTTGGCCCATGGATTC 1130
Query 536 AATATCATCAGCTCCCATCAATGCCACAGCCTCAAGCATATATGCCATATCCGGTTTCAG 595
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1131 AATATCATCAGCTCCCATCAATGCCACAGCCTCAAGCATTTATGCCCTATCCGGTTTCAG 1190
Query 596 ATATGCAAGCGATGGTGTCTCAGTCTTCTTTAATGGGTGGTTTGTCAGATACACAAACTC 655
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1191 ATATGCAAGCAATGGTGTCTCAGTCTTCTTTGATGGGTGGTTTGTCAGATACACAAACTC 1250
Query 656 Caggaaggaagagagtagcttcaggagaagttgtagagaagactgtagagaggaggcaga 715
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 CTGGAAGGAAGAGGGTAGCTTCAGGAGAAGTTGTAGAGAAGACTGTAGAGAGGAGGCAGA 1310
Query 716 agagaatgataaagaacagagagTCTGCTGCTCGTTCCCGAGCTAGGAAACAGGCTTACA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 AGAGAATGATAAAGAACAGAGAGTCTGCTGCTCGTTCCCGAGCTAGGAAACAGGCTTACA 1370
Query 776 CTCATGAGCTAGAGATCAAAGTTTCGCGGTTAGAAGAAGAAAACGAAAGACTCAGGAGGC 835
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1371 CTCATGAGCTAGAGATCAAAGTTTCACGGTTAGAAGAAGAAAACGAAAGACTCAGGAAGC 1430
Query 836 AAAAGGAGGTGGAGAAAATCCTCCCAAGTGCACCACCGCCTGATCCCAAGCGGCAGCTCC 895
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1431 AAAAGGAGGTGGAAAAAATCCTCCCAAGTGTACCACCGCCTGATCCCAAGCGGCAGCTCC 1490
Query 896 GGCGAACAAGCTCATCTCCTTTCTGATCTCGAAACTCttttt 937
| || |||||||| ||||||||||||||| |||||||||||
Sbjct 1491 GACGGACAAGCTCGGCTCCTTTCTGATCTCTAAACTCTTTTT 1532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46114946946
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5