BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938652
Length=1075
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57580.1 | Symbols: | F-box and associated interaction doma... 1144 0.0
AT3G56890.1 | Symbols: | F-box associated ubiquitination effec... 706 0.0
AT3G57590.1 | Symbols: | F-box and associated interaction doma... 545 2e-154
AT1G33020.1 | Symbols: | F-box and associated interaction doma... 187 2e-46
AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-... 126 4e-28
AT2G23160.1 | Symbols: | F-box family protein | chr2:9862470-9... 121 2e-26
AT1G30945.1 | Symbols: | pseudogene, hypothetical protein | ch... 93.5 4e-18
AT2G02660.1 | Symbols: | F-box associated ubiquitination effec... 80.5 3e-14
> AT3G57580.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:21320491-21322379 REVERSE LENGTH=1889
Length=1889
Score = 1144 bits (619), Expect = 0.0
Identities = 909/1043 (87%), Gaps = 43/1043 (4%)
Strand=Plus/Plus
Query 55 TTCTCAGGAGACATTAGCCAATACGCTTGTAGCTATGCCTCAGGTTTGATCTACTTCCCT 114
||||||||||| ||||||| ||| |||||||||||||||||||||| |||| || |||
Sbjct 639 TTCTCAGGAGATGTTAGCCACTACATTTGTAGCTATGCCTCAGGTTTGCTCTATTTTCCT 698
Query 115 GTTGTGCGGATCATTGATACGGACACGATTGTGATTTGTAACCCTATCACCGGAATGTAT 174
| ||||| ||| ||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 699 GCTGTGCATATCGTTGATACTGAGACGATTGTGATTTGTAACCCTATCACCGGAATGTAT 758
Query 175 GTGGGCTTACCTGAAG-TCATGAAGTACAGCAGGTCGAAAGGCTTTTTAGGGTTTGATCC 233
||||||||||| | |||||||| |||| ||||| ||||||||||| |||||||||
Sbjct 759 ACGGGCTTACCTG-TGATCATGAAGGACAGAAGGTCTCGAGGCTTTTTAGTGTTTGATCC 817
Query 234 CATTGATAAGCAATTCAAGGCATTGGATTA-TGATTCCATTCTAACATTAGGATCTGGAG 292
| ||||||||| ||||||||| || || || | ||| |||||||||||||||||||||||
Sbjct 818 CGTTGATAAGCGATTCAAGGCTTTTGA-TACTCATTTCATTCTAACATTAGGATCTGGAG 876
Query 293 AACTCAAGTGGA-GGATAAAGGATATCCATGGTCCTCTGTATGAGCGTTGTCCTTCGACT 351
|||||||||||| ||| |||| |||||| | |||||||||||||||||||| |||||| |
Sbjct 877 AACTCAAGTGGAGGGA-AAAGAATATCCCTTGTCCTCTGTATGAGCGTTGTTCTTCGAAT 935
Query 352 CAAGGGATATGCATCAATGGGGTTTTGTATTACTTAGCTAGAACT-TACTTAGCTGAAAC 410
|||||||||||||| ||||||||||||||||||||||||| |||| | ||||| ||||||
Sbjct 936 CAAGGGATATGCATTAATGGGGTTTTGTATTACTTAGCTAAAACTGT-CTTAGTTGAAAC 994
Query 411 A----CT---TT--C---TTTGATAGTTCGCTTTGATGTTAGCTCTGAGGAGTTCAAGTT 458
| | || | |||||||||||||||||||||||| |||||||||||||||||
Sbjct 995 AGTTTTTGGATTGACGTTTTTGATAGTTCGCTTTGATGTTAGTTCTGAGGAGTTCAAGTT 1054
Query 459 TATTGACGCAGCATGCTTTGATGATCATATAGAGGATCCTACTGGATTGAGGTTGGTCAA 518
||||||||| || ||||| |||||| | || ||||||||||| ||||||| ||||||||
Sbjct 1055 TATTGACGCTGCCCGCTTTAATGATCGTCTAAAGGATCCTACTAGATTGAGTTTGGTCAA 1114
Query 519 CTATATGGGTAAATTAGGTGTGACTAATTGCAA-TAATGTTGACGCTGGTGGAAGACGTA 577
||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||
Sbjct 1115 CTATATGGGTAAATTAGGTGTGACTGATTGCAACTG-TGTTGACGCTGGTGGAAGACGTA 1173
Query 578 CAGTTGAGTTGTGTATGTGGGTTCTAGAGGATGTCGAGAAACAGGATTGGGTGAAATATG 637
| |||||||||||| ||||||||||||||||||| ||||||| ||| |||||||| ||||
Sbjct 1174 CCGTTGAGTTGTGTCTGTGGGTTCTAGAGGATGTTGAGAAACTGGAATGGGTGAAGTATG 1233
Query 638 TCTACACTCTGCCAGAGAATGAAGTCCTTGGTTCCTGCGAATTTTCAGTTGCTGGAGTGA 697
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1234 TCTACACTCTGCCTGAGAATGAAGTCCTTGCTTCCTGCGAATTTTCAGTTGCTGGAGTGA 1293
Query 698 CTGCAACAGGGGATATTGTCTTGTGTATGAAATATACATGTAAACCGTACTATGTTTTCT 757
|||| || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1294 CTGCTACTGGGGATATTGTCTTGTGTATGAAGTATACATGTAAACCGTACTATGTGTTCT 1353
Query 758 ACTTCAATCCCGAAAAGAACACTCTCCAAAGTGTTGAAATCCAAGGTTTTGGAGCTGAGC 817
||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||| |||
Sbjct 1354 ACTTCAATCCCGAAAAGAAAACTCTGCAAACTGTTGAAATCCAAGGCTTTGGAGCTAAGC 1413
Query 818 TTGAAGCGGTTGAGACTCGTGGTGAAGTTTATGGCTTTGTTGACTATGTAGAGGATCTTA 877
|||||| |||||||| |||||||||||||| || || |||||||||||||||||||||||
Sbjct 1414 TTGAAGAGGTTGAGAATCGTGGTGAAGTTTTTGCCTATGTTGACTATGTAGAGGATCTTA 1473
Query 878 GTGTAAACGATGCAAAGCAGTTCAAGTCAAGCATTTCTCATGTCAAGACTCGCTGCTCCT 937
|| |||||||||| ||||| ||||||||||||||||||||||||||| || |||| |||
Sbjct 1474 GTCTAAACGATGCGAAGCAACTCAAGTCAAGCATTTCTCATGTCAAGAGTCTCTGCCCCT 1533
Query 938 GCTGT-AACACGTTA-T--ATCCTGACAACATCGGGGAAGGGg-a--a-ga-ggtagatg 988
||||| || | |||| | | ||||| ||||||||||||| || | | || ||| | ||
Sbjct 1534 GCTGTCAAAA-GTTAGTGCAGCCTGAAAACATCGGGGAAGTGGTATGATGATGGT-G-TG 1590
Query 989 a-t-ggt-gt-gaaa-ga--ga--catcagtgaagatcaagaaagaagaagaagagaaga 1039
| | || | |||| || || ||||||||||||| |||| | |||||||||||||||
Sbjct 1591 AGTAGGGAGAAGAAATGAAAGATACATCAGTGAAGATGAAGACATAAGAAGAAGAGAAGA 1650
Query 1040 gtattagagagTAAAACAATGAG 1062
||| |||||||||||| |||||
Sbjct 1651 TTATAAGAGAGTAAAACGATGAG 1673
> AT3G56890.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:21062990-21063717 REVERSE LENGTH=660
Length=660
Score = 706 bits (382), Expect = 0.0
Identities = 487/537 (91%), Gaps = 10/537 (2%)
Strand=Plus/Plus
Query 440 GCTCTGAGGAGTTCAAGTTTATTGACG-CAGCATGCTTTGATGATCATATAGAGGATCCT 498
||||||||||||||||||||||||| | ||| |||||| ||||||||||||||||| |||
Sbjct 119 GCTCTGAGGAGTTCAAGTTTATTGA-GTCAGAATGCTTAGATGATCATATAGAGGACCCT 177
Query 499 ACTGGATTGAGGTTGGTCAACTATATGGGTAAATTAGGTGTGACTAATTGCAA-TAATGT 557
| |||||| || ||||||||||||||||||||||||| ||||||||| ||||| | ||||
Sbjct 178 AGTGGATTAAGTTTGGTCAACTATATGGGTAAATTAGCTGTGACTAAGTGCAACT-ATGT 236
Query 558 TGACGCTGGTGGAAGACGTACAGTTGAGTTGTGTATGTGGGTTCTAGAGGATGTCGAGAA 617
||||| ||||||||||||| | |||||||||||| ||||||||||||||||||| |||||
Sbjct 237 TGACGTTGGTGGAAGACGTTCCGTTGAGTTGTGTTTGTGGGTTCTAGAGGATGTTGAGAA 296
Query 618 ACAGGATTGGGTGAAATATGTCTACACTCTGCCAGAGAATGAAGTCCTTGGTTCCTGCGA 677
|||||| ||||| || |||||||||||| | || ||||||||||||||||||||||||||
Sbjct 297 ACAGGAATGGGTCAAGTATGTCTACACTTTACCGGAGAATGAAGTCCTTGGTTCCTGCGA 356
Query 678 ATTTTCAGTTGCTGGAGTGACTGCAACAGGGGATATTGTCTTGTGTATGAAATATACATG 737
||||||||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||
Sbjct 357 GTTTTCAGTTGCTGGAGTGACTGCAAGAGGCGATATTGTTTTGTGTATGAAGTATACATG 416
Query 738 TAAACCGTACTATGTTTTCTACTTCAATCCCGAAAAGAACACTCTCCAAAGTGTTGAAAT 797
||||||||||||||| ||||||||| ||||||||||||| || |||||||||||||||||
Sbjct 417 TAAACCGTACTATGTATTCTACTTCGATCCCGAAAAGAAAACCCTCCAAAGTGTTGAAAT 476
Query 798 CCAAGGTTTTGGAGCTGAGCTTGAAGCGGTTGAG-ACTCGTGGTGAAGTTTATGGCTTTG 856
|||||||||||||||| ||||||||| ||||||| | ||||||||||||||||| |||||
Sbjct 477 CCAAGGTTTTGGAGCTAAGCTTGAAGAGGTTGAGCA-TCGTGGTGAAGTTTATGCCTTTG 535
Query 857 TTGACTATGTAGAGGATCTTAGTGTAAACGATGCAAAGCAGTTCAAGTCAAGCATTTCTC 916
|||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 536 TTGACTATGTTGAGGATCTTAGTCTAAACGATGCAAAGCAATTCAAGTCAAGCATTTCTC 595
Query 917 ATGTCAAGA-CTCGCTGCTCCTGCTGT-AACACGTTATATCCTGACAACATCGGGGA 971
|| |||||| | ||||| | ||||||| || ||||||| |||||||||| | |||||
Sbjct 596 ATATCAAGAGC-CGCTGTTACTGCTGTGAA-ACGTTATGTCCTGACAACGTAGGGGA 650
> AT3G57590.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:21330182-21331396 REVERSE LENGTH=1215
Length=1215
Score = 545 bits (295), Expect = 2e-154
Identities = 567/693 (82%), Gaps = 40/693 (6%)
Strand=Plus/Plus
Query 271 ATTCTAACATTAGGATCTGGA-GAACTCAAG-TGGAGGA-TAAAGGAT-ATCCA-TGGTC 325
||||| ||||||||| || || ||||| || ||||||| | || || || | | |||
Sbjct 508 ATTCTGACATTAGGAACT-GAGGAACT-GAGCTGGAGGAGT-AA-TATCAT-TAGTTGTC 562
Query 326 CT-CTGTATGAGCGTTGTCCTTCGACTCAAGGGATATGCATCAATGGGGTTTTGTATTAC 384
|| | ||||| || | | ||| || | |||| ||||| |||||||| ||||||||||||
Sbjct 563 CTGC-ATATGATCG-T-T-CTTTGAGTGAAGGAATATGTATCAATGGAGTTTTGTATTAC 618
Query 385 TTAGCT-AGAACTTACTTAGCTGAAACAC-T-TTCTTTGAT-AGTTCGCTTTGATGTTAG 440
|||||| || || | ||| | || || | | || | |||| | || |||||||||| ||
Sbjct 619 TTAGCTCAG-AC-T-CTT-GGTG-TAC-CGTCTTGTGTGATCA-TTTGCTTTGATGTAAG 671
Query 441 CTCTGAGGAGTTCAAGT-TTATTGACGCAGCATGCTTTGATGATCATA-TAGAGGATCCT 498
|||||||| || |||| || ||||||||| ||||||| ||||||| | | || ||| ||
Sbjct 672 GTCTGAGGAATTTAAGTATT-TTGACGCAGGATGCTTTAATGATCA-ACTTGATGATACT 729
Query 499 ACTGGATTGAGGTTGGTCAACTAT-ATGGGTAAATTAGGTGTGACTAATTGCAA-TAATG 556
| ||| |||| ||||| |||||| | |||||||||| ||| || |||||| || | |||
Sbjct 730 AGTGGGTTGATTTTGGTAAACTATGA-GGGTAAATTAAGTGGGATTAATTGGAAGT-ATG 787
Query 557 TTGACGCTGGTGGAAGACGTACAGTTGAGTTGTGTATGTGGGTTCTAGAGGATGTCGAGA 616
| | ||||||| ||| || || ||||||||| ||||||||||||||||||||| |||||
Sbjct 788 GTCAAGCTGGTGAAAGGCGCACCGTTGAGTTGCGTATGTGGGTTCTAGAGGATGCCGAGA 847
Query 617 AACAGGATTGGGTGAAATATGTCTACACTCTGCCAGAGAATGAAGTCCTTGGTTCCTGCG 676
| || || ||||| |||||||| ||||||||||| |||||||||||||||| ||||||||
Sbjct 848 AGCATGAATGGGTTAAATATGTGTACACTCTGCCGGAGAATGAAGTCCTTGATTCCTGCG 907
Query 677 AATTTTCAGTTGCTGGAGTGACTGCAACAGGGGATATTGTCTTGTGTATGAAATATACAT 736
| ||||||||||||||||||||| | | ||| |||||||| |||||||||||||||||||
Sbjct 908 ACTTTTCAGTTGCTGGAGTGACTACTAGAGGTGATATTGTTTTGTGTATGAAATATACAT 967
Query 737 GTAAACCGTACTATGTTTTCTACTTCAATCCCGAAAAGAACACTCTCCAAAGTGTTGAAA 796
||||||||| ||||| ||||||||||||||||| | |||||||||||| || |||||||
Sbjct 968 GTAAACCGTTTTATGTGTTCTACTTCAATCCCGAGAGGAACACTCTCCAGAGCGTTGAAA 1027
Query 797 TCCAAGGTTTTGGAGCTGAGCTTGAAGCGGTTGAGACTCGTGGT-GAAGTTTATGGCTTT 855
|||||| |||||||||| | |||||||||||||||| | ||||| || ||||||| ||||
Sbjct 1028 TCCAAGATTTTGGAGCTAACCTTGAAGCGGTTGAGAATTGTGGTAGA-GTTTATG-CTTT 1085
Query 856 -GTTGACTATGTAGAGGATCTTAGTGTAAACGATGCAAAGCAGTTCAAGTCAAGCATTTC 914
||| || |||||||||||||| | || ||| | | ||||| ||||||||||||| ||
Sbjct 1086 TGTTAACCATGTAGAGGATCTTCGGGTTAACAAAGGGAAGCAACTCAAGTCAAGCATCTC 1145
Query 915 TCATGTCAAG-ACTCGCTGCTCCTGCTGTAACA 946
||| |||||| | || |||||| ||||||||||
Sbjct 1146 TCAAGTCAAGCA-TCTCTGCTCATGCTGTAACA 1177
> AT1G33020.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11962746-11964832 FORWARD LENGTH=1647
Length=1647
Score = 187 bits (101), Expect = 2e-46
Identities = 350/462 (76%), Gaps = 50/462 (11%)
Strand=Plus/Plus
Query 353 AAGGGATATGCATCAATGGGGTTTTGTATTACTTAGCTAGAACTTACTTAGCT-GAAACA 411
||| ||||||| ||||||||||||||||||||||||| |||| || | | | ||
Sbjct 620 AAGAGATATGCGCCAATGGGGTTTTGTATTACTTAGCT-GAACCAAC-T-GATGGAGGGT 676
Query 412 CTTTCTTTGATA-GTTCGCTTTGATGTTAGCTCTGAGGAGTTCAAGTTTATTGACGCAGC 470
| || | ||||| ||| ||||||||||| | |||||| | ||||| ||||||||||||
Sbjct 677 C-TTATGTGATATGTT-GCTTTGATGTTCGGTCTGAGAAATTCAAATTTATTGACGCAAA 734
Query 471 ATGCTTTGATGATCATATAGAGGATCCTACTGGATTGAGGTTGGTCAACTATATGGGTAA 530
|||||||| | | || | | || || ||| | ||| |||| |||| ||||||
Sbjct 735 ATGCTTTG--G-TGAT-T------T-CT-CT--ATTCA-ATTGATCAATTATAAGGGTAA 779
Query 531 ATTAGGTGTGACTAATTGCAA-TAATGTTGA-CGCT-GGTGG-AAGACGTACAGTTGAGT 586
| |||||| || || ||| || | ||| | | || | | ||| ||| ||||| |||||||
Sbjct 780 ACTAGGTGGGATTAGTTGGAAGT-ATGAT-ACCG-TCGATGGAAAG-CGTACCGTTGAGT 835
Query 587 TGTGTATGTGGGTTCTAGAGGATGTCGAGAAACAGGATTGGGTG-AAATATGTCTACACT 645
||| ||||||||||||||||||||||||||||||| | ||| | ||||| |||||| ||
Sbjct 836 TGTATATGTGGGTTCTAGAGGATGTCGAGAAACAGAAATGG-TCCAAATACGTCTACCCT 894
Query 646 CTGCCAGAGAATGAAGTCCTTGGTTCCTGCGAATT-TTCAGTTGCTGGAGTGACTGC-AA 703
|||| | |||| |||| || | || ||| ||||| |||||||| || ||
Sbjct 895 TTGCCGGGGAAT----TCCTA----CC----A-TTATTCCGTTGCAGGAGTGACAGCTAA 941
Query 704 CAGGGGATATTGTCTTGTGT-ATGAAATATACATGTAAACCGTACTATGTTTTCTACTTC 762
||| |||||||| || ||| | || || |||| |||||||| |||||||||||| |
Sbjct 942 -AGGTGATATTGTTTT-TGTCAAGACTTACACATCTAAACCGTTTTATGTTTTCTACGTA 999
Query 763 AATCCCGAAAAGAACACTCTCCAAAGTGTTGAAATCCAAGGT 804
|||||||||||||| ||| ||||| | ||||||||||| |||
Sbjct 1000 AATCCCGAAAAGAAAACTTTCCAACGCGTTGAAATCCATGGT 1041
> AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-11092899
FORWARD LENGTH=1068
Length=1068
Score = 126 bits (68), Expect = 4e-28
Identities = 232/307 (76%), Gaps = 27/307 (9%)
Strand=Plus/Plus
Query 517 AACTATATGGGTAAATTAGGTGTGACTA-ATTGCAATAATGTTGACGC-TGGTGGAAGAC 574
||||||| |||||||||||||||||||| | || || | || | | |||| | ||
Sbjct 544 AACTATAAGGGTAAATTAGGTGTGACTATAATGGAA-GA--TT-A-TCATGGT-G--GAT 595
Query 575 GTACAGTTGAGTTGTGTATGTGGGTTCTAGAGGATGTCGAGAAACAGGATTGGGTGAAAT 634
| | || ||||| ||||||||||||||||||||||||||||| |||| ||| || ||
Sbjct 596 TTCCCCTTAAGTTGCGTATGTGGGTTCTAGAGGATGTCGAGAAAGAGGAATGGACGAGAT 655
Query 635 ATGTCTACACTCTG---CCAGAGAATGAAGTCCTTGGTTCC-TG-CGAATTT-TCA-GTT 687
||| ||||||| || || |||||| ||||| || | || | | | | | | |||
Sbjct 656 ATGCCTACACTTTGAGGCCTGAGAATAAAGTCGA-GGA-CAATGACTA-TGTAT-ATGTT 711
Query 688 GCTGGAGTGACTGCAACAGGGGATATTGTCTTGTGTATGAAATATA---CATGTAAACCG 744
| ||| | ||||| |||| || ||||| || || | |||| | | ||| |||||||
Sbjct 712 GTTGGGGCAACTGCTTCAGGTGAAATTGT-TT-TG-ACGAAACAGAATGCATATAAACCG 768
Query 745 TACTATGTTTTCTACTTCAATCCCGAAAAGAACACTCTCCAAAGTGTTGAAATCCAAGGT 804
| |||||||||||||| | ||| |||| ||||||||||| ||| |||||||||||||||
Sbjct 769 TTTTATGTTTTCTACTTTAGTCCTGAAAGGAACACTCTCCTAAGCGTTGAAATCCAAGGT 828
Query 805 TTTGGAG 811
||||||
Sbjct 829 GTTGGAG 835
Score = 52.8 bits (28), Expect = 7e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 357 GATATGCATCAATGGGGTTTTGTATTAC 384
||||||||||||||||||||||||||||
Sbjct 402 GATATGCATCAATGGGGTTTTGTATTAC 429
> AT2G23160.1 | Symbols: | F-box family protein | chr2:9862470-9863744
FORWARD LENGTH=1275
Length=1275
Score = 121 bits (65), Expect = 2e-26
Identities = 181/233 (78%), Gaps = 23/233 (10%)
Strand=Plus/Plus
Query 593 TGTGGGTTCTAGAGGATGTCGAGAAACAGGATTGGGT-GAAATATGTCTACACTCT-G-C 649
||||||||||||||||||| ||||||||||| | ||| |||||||| ||||||| | | |
Sbjct 887 TGTGGGTTCTAGAGGATGTAGAGAAACAGGAAT-GGTAGAAATATGCCTACACT-TGGAC 944
Query 650 CAGA-GAATGA-AGTCCTTGGTTCCT-GCGAATTTTCAGTTGCTGGAGTGACTGCAAC-- 704
| || | || | | || || | || | | || |||| |||||| | |||||| |
Sbjct 945 C-GATG-AT-ATATTCTTTCG-TCGTCGTGAGGTTTCCGTTGCTCCAACGACTGCTGCTT 1000
Query 705 AGGG-GATATTGTC--TT-G-TGTATGAAATATA--CATGTA-AACCGTACTATGTTTTC 756
||| || || ||| || | ||| || | |||| | || | |||| | |||||||||
Sbjct 1001 GGGGTGACATAGTCTTTTCGATGTGTG-AGTATACTCCTGGACAACCATTTTATGTTTTC 1059
Query 757 TACTTCAATCCCGAAAAGAACACTCTCCAAAGTGTTGAAATCCAAGGTTTTGG 809
||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1060 TACTTCAATCCCGAAAAGAGCACTCTCCAACGTGTTGAAATCCAAGGTTTTGG 1112
> AT1G30945.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11026338-11026784 REVERSE LENGTH=447
Length=447
Score = 93.5 bits (50), Expect = 4e-18
Identities = 163/214 (76%), Gaps = 22/214 (10%)
Strand=Plus/Plus
Query 580 GTTGAGTTGTGTATGTGGGTTCTAGAGGATGTCGAGAAACAGGATTGGGT-GAAATATGT 638
|||||||| ||||||||||||||||||||||||||||||| || ||| | || | ||||
Sbjct 220 GTTGAGTTACGTATGTGGGTTCTAGAGGATGTCGAGAAACACGAATGG-TCGAGACATGT 278
Query 639 CTACACTCTGCCAGAGA--AT-GAAGTCCTTG--GT-TC-CTGCGAAT-TTT-CAGTTGC 689
||| || |||| |||| || ||| | | | || | || | ||| ||| | ||||
Sbjct 279 TTACTCTTTGCCGGAGACCATTGAATTTCA-GCAGTGTAACTAC-AATATTTGC-GTTGG 335
Query 690 TGG-AGTGACTGCAACAGGGGATATTGTCTTGT-GTA-TGA-A-ATAT--ACATGTAAAC 742
||| | ||| ||| | ||| || ||||| || | | | | | | |||| |||| ||||
Sbjct 336 TGGGA-TGAATGCTATAGGTGAAATTGTTTTTTCGGAGTCATATATATCTACATCCAAAC 394
Query 743 CGTACTATGTTTTCTACTTCAATCCCGAAAAGAA 776
||| |||||||||||||||||||||||||||||
Sbjct 395 CGTTTTATGTTTTCTACTTCAATCCCGAAAAGAA 428
Score = 63.9 bits (34), Expect = 3e-09
Identities = 88/112 (79%), Gaps = 11/112 (10%)
Strand=Plus/Plus
Query 353 AAGGGATATGCATCAATGGGGTTTTGTATTACT-TAGCTAGAACTTACTTAGCTGAAACA 411
||| ||||||||||||||||||||||||||||| | ||||| || | |||| | |
Sbjct 16 AAGAGATATGCATCAATGGGGTTTTGTATTACTCTGGCTAG---TT-C--AGCTCATGGA 69
Query 412 CTTTCTT-TGATAGTTCGCTTT-GATGTTAGCTCTGAGGAGTTCAAGTTTAT 461
| |||| |||||||| |||| ||| |||| |||||| | ||||| |||||
Sbjct 70 -TATCTTCTGATAGTTT-CTTTTGATTTTAGGTCTGAGAAATTCAATTTTAT 119
> AT2G02660.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:738504-739769 FORWARD LENGTH=1266
Length=1266
Score = 80.5 bits (43), Expect = 3e-14
Identities = 94/117 (80%), Gaps = 10/117 (9%)
Strand=Plus/Plus
Query 355 GGGATATGCATCAATGGGGTTTTGTATTACTTAGCT-AGA-ACTTACTTAGCTGAAACAC 412
|||||||||||||||||||||||||||| ||||||| ||| | | | |||| | | |
Sbjct 598 GGGATATGCATCAATGGGGTTTTGTATTTCTTAGCTGAGAGAA--A-TGAGCT-AGAGTC 653
Query 413 T--TTCTTTGATAGTTCGCTTTGATGTTAGCTCTGAGGAGTTCA-AGTTTATTGACG 466
| || | |||||||| ||||||||||||| |||||| | |||| | | ||||||||
Sbjct 654 TGATTATGTGATAGTTTGCTTTGATGTTAGGTCTGAGAAATTCACA-TATATTGACG 709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52660371705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5