BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg938656 Length=1057 Score E Sequences producing significant alignments: (Bits) Value AT3G56920.1 | Symbols: | DHHC-type zinc finger family protein ... 1664 0.0 AT2G40990.1 | Symbols: | DHHC-type zinc finger family protein ... 652 0.0 > AT3G56920.1 | Symbols: | DHHC-type zinc finger family protein | chr3:21070648-21072702 FORWARD LENGTH=1464 Length=1464 Score = 1664 bits (901), Expect = 0.0 Identities = 1006/1058 (95%), Gaps = 2/1058 (0%) Strand=Plus/Plus Query 1 ATTCCCCGAAGAAAAACGTTATGTCTTCTCAGAATCCTGAACGAAAAAGGATCTATCAAG 60 |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct 167 ATTCCCCGAAGAAAAACGTTATGTCTTCTCAGAATCTTGAACGACAAAGGATCTATCAAG 226 Query 61 TTTGGCCCGCCAAAAATAAATTTTACTGTGGGGGAAGACTAGTGTTTGGTCCAGATGCAT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 227 TTTGGCCCGCCAAAAATAAATTTTACTGTGGGGGAAGACTAGTGTTTGGTCCAGATGCAT 286 Query 121 CGTCGCTTCTTTTGACCACATGTATGATTGGAGGACCAGCTATCACTTTCTGCATCAGGA 180 |||| ||||||||||||||||||||||| ||||| ||||||||| |||||| |||||||| Sbjct 287 CGTCACTTCTTTTGACCACATGTATGATAGGAGGGCCAGCTATCGCTTTCTCCATCAGGA 346 Query 181 TGGCTTATTTGATCAGCCATCGTCACCCTTTCTTTCATTCTCTTACTTTGATCGGTGCAA 240 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 347 TGGCTTATTTGATAAGCCATCGTCACCCTTTCTTTCATTCTCTTACTTTGATTGGTGCAA 406 Query 241 TTCTTCTCACATTCATGGCTTTTACTTTTCTCTTCTTGACATCATCGAGAGACCCCGGGA 300 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 407 TTCTTCTCACATTCATGGCTTTCACTTTTCTCTTCTTGACATCATCGAGAGACCCCGGGA 466 Query 301 TTATCCCAAGGAACAAAGAAGTGCCTGAGGCAGAGATTCCTCATGTCATCACCCAATCGA 360 ||||||||||||||||| ||||| ||||||||||||||||| |||| | ||||||||||| Sbjct 467 TTATCCCAAGGAACAAACAAGTGTCTGAGGCAGAGATTCCTGATGTTACCACCCAATCGA 526 Query 361 CAGAATGGGTGACTAACAAATTAGGAAATATGAAATTACCTCGAACAAAAGATGTAATGG 420 ||||||||||||||| ||||||||||| | ||||| |||||||||||||||||||||||| Sbjct 527 CAGAATGGGTGACTAGCAAATTAGGAAGTGTGAAACTACCTCGAACAAAAGATGTAATGG 586 Query 421 TGAATGGCTTCACCGTGAAAGTGAAGTTCTGCGATACCTGTCAGCTATACCGTCCTCCTC 480 ||||||||||||| || ||||||||||| |||||||||||||||||||| |||||||||| Sbjct 587 TGAATGGCTTCACTGTCAAAGTGAAGTTTTGCGATACCTGTCAGCTATATCGTCCTCCTC 646 Query 481 GTGCCTTTCACTGCTCAATCTGCAACAACTGTGTCCAAAGGTTTGATCATCACTGTCCAT 540 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 647 GTGCCTTTCACTGCTCAATCTGCAATAACTGTGTCCAAAGGTTTGATCATCACTGTCCTT 706 Query 541 GGGTAGGTCAGTGCATCGCCTTGCGTAACTATCCATTCTTCGTCTGTTTCTTATCATGTT 600 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 707 GGGTTGGTCAGTGCATCGCCTTGCGTAACTATCCATTCTTCGTCTGTTTCTTATCATGTT 766 Query 601 CAACACTCCTCTGCATCTATGTCTTT-GTCTTCTCATGGGTCAGCATGCTTAAAGTCCAT 659 ||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||| Sbjct 767 CAACACTCCTCTGCATCTACGT-TTTCGTCTTCTCATGGGTCAGCATGCTTAAAGTCCAT 825 Query 660 GGGGAATTCTATGCTGTCCTTGCTGATGACTTAATATTAGGTGTTCTTGGCCTCTACTGC 719 ||||||||||||| ||| || ||||||||||||||||||||||||||||| ||||||||| Sbjct 826 GGGGAATTCTATGTTGTTCTCGCTGATGACTTAATATTAGGTGTTCTTGGTCTCTACTGC 885 Query 720 TTTGTTTCAGTCTGGTTTGTTGGTGGACTTACTGTCTTCCACTTCTACCTTATCTGCACC 779 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 886 TTTGTTTCCGTTTGGTTTGTTGGTGGACTTACTGTCTTCCACTTCTACCTTATCTGCACC 945 Query 780 AACCAGACGACCTGTGAGAATTTTCGGTACCATTATGATAAGAAGGAAAACCCTTATCGA 839 ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| ||| Sbjct 946 AACCAGACGACTTGTGAGAATTTTCGGTACCATTACGACAAGAAGGAAAACCCTTACCGA 1005 Query 840 AAGGGGATCTTAGAGAACTTCAAGGAACTGTTCTTTGCAAGAATCCCACCACCTTTGACC 899 |||||||||||||||||||||||||| || |||||||||| ||| ||||||||||||| | Sbjct 1006 AAGGGGATCTTAGAGAACTTCAAGGAGCTATTCTTTGCAAAAATTCCACCACCTTTGATC 1065 Query 900 AATTTCAGAGATTGGGCGCCAGAAGAAGAAGACGATGTGGAGGTCGGATCCATAGCCTCT 959 ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1066 AATTTCAGAGATTGGTCGCCAGAAGAAGAAGACGATGTGGAGGTTGGATCCATAGCCTCT 1125 Query 960 GAGCTAGGCAGAAACTTTGGTCTAAAAGACACGAAAATGAGCAGTGGCAAGTCTGATTCC 1019 ||||||| |||| |||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 1126 GAGCTAGTCAGAGCCTTTGGTCCAAAAGACACGAAAATGAGCAGTGGAAAGTCTGATTCC 1185 Query 1020 GAAGCTAGAGAACGGTAACAACAGTGGCACGGCTGTCA 1057 |||||||||||||||||||||| ||||||||||||||| Sbjct 1186 GAAGCTAGAGAACGGTAACAACGGTGGCACGGCTGTCA 1223 > AT2G40990.1 | Symbols: | DHHC-type zinc finger family protein | chr2:17105097-17106773 REVERSE LENGTH=1236 Length=1236 Score = 652 bits (353), Expect = 0.0 Identities = 776/977 (79%), Gaps = 41/977 (4%) Strand=Plus/Plus Query 21 ATGTCTTCTC-AGAATCCTGAACGAAAAAGGATCTATCAAGTTTGGCCCGCCAAAAATAA 79 |||| ||||| || ||| | ||| || || ||||| ||| | ||||||| ||| |||| Sbjct 55 ATGTTTTCTCAAG-ATCATAAACCCAAGAGAATCTACCAACTCTGGCCCGGCAACAATAG 113 Query 80 ATTTTACTGTGG-GGGAAGACTAGTGTTTGGTCCAGATGCATCGTCGCTTCTTTTGACCA 138 |||||| ||||| ||| |||||||| |||||||||||||||||||| || ||| |||| | Sbjct 114 ATTTTATTGTGGAGGG-AGACTAGTCTTTGGTCCAGATGCATCGTCTCTCCTTCTGACAA 172 Query 139 CATG-TATGATTGGAGGACCAGCTATCACTTTCTGCATCA-GGATGGCTTATTTGATCAG 196 || | |||||||||||| || ||| ||||||||||||| | | |||| || ||||||| | Sbjct 173 CA-GCTATGATTGGAGGTCCTGCTCTCACTTTCTGCAT-ACGAATGGTTTTTTTGATCGG 230 Query 197 CCATCGTC-ACCCTTTCTTTCATTCTCTTACT-TTGATCGGTGCAATTCTT-CTCACAT- 252 | || | | ||||| || || ||||||| | ||| | |||||| || || ||||| | Sbjct 231 AAAACG-CTATCCTTTGTTCCACTCTCTTA-TATTGTTGGGTGCACTT-TTGCTCAC-TG 286 Query 253 TCATGGCTTTTACTTTTCTCTTCTTGACATCATCGAGAGACCCCGGGATTATCCCAAGGA 312 || ||| |||||| ||||||||||| ||||||||||||||||||||||||||||| || | Sbjct 287 TCCTGGATTTTACATTTCTCTTCTTAACATCATCGAGAGACCCCGGGATTATCCCTAGAA 346 Query 313 ACAAAGAAGTGCCTGAGGCAGAGATTCCTC-ATGTCATCACCCAATCGACAGAATGGGTG 371 ||||||||| ||||| ||||| | || || | ||||| ||||| |||| ||||| Sbjct 347 ACAAAGAAGCACCTGAAGCAGA-AGGGCTTGATATGATCACTCAATCCTCAGAGTGGGTA 405 Query 372 A-CTAACAAATTAGGAAATATGAA-ATTACCTCGAACAAAAGATGTAATGGTGAATGGCT 429 | | |||||| | || |||| || || ||||||||| || ||| || |||||||||||| Sbjct 406 AAC-AACAAACTCGGTAATACAAAGAT-ACCTCGAACGAAGGATATATTGGTGAATGGCT 463 Query 430 TCACCGTGAAAGTGAAGTTCTGCGATACCTGTCAGCTATACCGTCCTCCTCGTGCCTTTC 489 ||| || ||||| || || || ||||| ||| ||| |||||||||||||| |||| || Sbjct 464 ACACTGTCAAAGTTAAATTTTGTGATACATGTTTGCTTTACCGTCCTCCTCGCGCCTCTC 523 Query 490 ACTGCTCAATCTGCAACAACTGTGTCCAAAGGTTTGATCATCACTGTCCATGGGTAGGTC 549 |||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||| || | Sbjct 524 ACTGTTCAATCTGTAACAACTGTGTTCAAAGGTTTGATCATCATTGTCCATGGGTTGGCC 583 Query 550 AGTGCATCGCCTTGCGTAACTATCCATTCTTCGTCTGTTTCTTATCATGTTCAACACTCC 609 | ||||| ||||| || |||||||||| |||| |||||||| ||||| ||||||||||| Sbjct 584 AATGCATAGCCTTACGAAACTATCCATACTTCATCTGTTTCATATCAACTTCAACACTCC 643 Query 610 TCTGCATCTATGTCTTTGTCTTCTCATGGGTCAGCATGCTTAAAGTCCATGGGGA-AT-T 667 ||||| | || ||||||||||||||||||||||| |||||| | || || || | || | Sbjct 644 TCTGCTTGTACGTCTTTGTCTTCTCATGGGTCAGTATGCTTGAGGTACACGGCAAGATGT 703 Query 668 CTATGC-TG-TCCTTGCTGATGACTTAATATTAGGTGTTCTTGGCCTCTACTGCTTTGT- 724 | | || || | | | |||||| |||| | |||||| |||||||||||| || Sbjct 704 -TGTTAATGGTCATCACAAACGACTTAGTATTTGTTGTTCTCATCCTCTACTGCTTCGTC 762 Query 725 -TTCAGTCTGGTTTGTTGGTGGACTTACTGTCTTCCA-CTTCTACCTTATCTGCACCAAC 782 || ||||||||||| || || || ||||| ||||| || |||||| ||||||||||| Sbjct 763 GTT--GTCTGGTTTGTCGGCGGGCTCACTGTTTTCCATCT-CTACCTCATCTGCACCAAT 819 Query 783 CAGACGACCTGTGAGAATTTTCGGTACCATTATGATAAGAAGGAAAACCCTTATCGAAAG 842 ||||| || | ||||||||| ||||| | ||||| ||||| |||||||||||| ||||| Sbjct 820 CAGACAACTTATGAGAATTTCCGGTATCGGTATGACAAGAAAGAAAACCCTTATGGAAAG 879 Query 843 GGGATCTT-AGAGAACTTCA-AGGAACTGTTCTTTGCAAGAATCCCACCACCTTTGACCA 900 || |||| | ||||| | | | || |||||||||| ||||| ||||| || ||| || Sbjct 880 GGTCTCTTCA-AGAACCT-ATATGAGTTGTTCTTTGCCAGAATTCCACCTCCCATGATCA 937 Query 901 ATTTCAGAGATTGGGCGCCAGAAGAAGAAGACGATGTGGAGGTCGGATCCATAGCCTCTG 960 | |||||||| ||||| ||||| ||| ||||| | | |||| |||||||| || |||| Sbjct 938 ACTTCAGAGACTGGGCTCCAGAGGAACCTGACGA-G-G-AGGTTGGATCCATTGCATCTG 994 Query 961 AGCTAGGCAGAAACTTT 977 |||||| | ||| |||| Sbjct 995 AGCTAGACCGAA-CTTT 1010 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51841639704 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5