BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938656
Length=1057
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56920.1 | Symbols: | DHHC-type zinc finger family protein ... 1664 0.0
AT2G40990.1 | Symbols: | DHHC-type zinc finger family protein ... 652 0.0
> AT3G56920.1 | Symbols: | DHHC-type zinc finger family protein
| chr3:21070648-21072702 FORWARD LENGTH=1464
Length=1464
Score = 1664 bits (901), Expect = 0.0
Identities = 1006/1058 (95%), Gaps = 2/1058 (0%)
Strand=Plus/Plus
Query 1 ATTCCCCGAAGAAAAACGTTATGTCTTCTCAGAATCCTGAACGAAAAAGGATCTATCAAG 60
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 167 ATTCCCCGAAGAAAAACGTTATGTCTTCTCAGAATCTTGAACGACAAAGGATCTATCAAG 226
Query 61 TTTGGCCCGCCAAAAATAAATTTTACTGTGGGGGAAGACTAGTGTTTGGTCCAGATGCAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 TTTGGCCCGCCAAAAATAAATTTTACTGTGGGGGAAGACTAGTGTTTGGTCCAGATGCAT 286
Query 121 CGTCGCTTCTTTTGACCACATGTATGATTGGAGGACCAGCTATCACTTTCTGCATCAGGA 180
|||| ||||||||||||||||||||||| ||||| ||||||||| |||||| ||||||||
Sbjct 287 CGTCACTTCTTTTGACCACATGTATGATAGGAGGGCCAGCTATCGCTTTCTCCATCAGGA 346
Query 181 TGGCTTATTTGATCAGCCATCGTCACCCTTTCTTTCATTCTCTTACTTTGATCGGTGCAA 240
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 347 TGGCTTATTTGATAAGCCATCGTCACCCTTTCTTTCATTCTCTTACTTTGATTGGTGCAA 406
Query 241 TTCTTCTCACATTCATGGCTTTTACTTTTCTCTTCTTGACATCATCGAGAGACCCCGGGA 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 407 TTCTTCTCACATTCATGGCTTTCACTTTTCTCTTCTTGACATCATCGAGAGACCCCGGGA 466
Query 301 TTATCCCAAGGAACAAAGAAGTGCCTGAGGCAGAGATTCCTCATGTCATCACCCAATCGA 360
||||||||||||||||| ||||| ||||||||||||||||| |||| | |||||||||||
Sbjct 467 TTATCCCAAGGAACAAACAAGTGTCTGAGGCAGAGATTCCTGATGTTACCACCCAATCGA 526
Query 361 CAGAATGGGTGACTAACAAATTAGGAAATATGAAATTACCTCGAACAAAAGATGTAATGG 420
||||||||||||||| ||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 527 CAGAATGGGTGACTAGCAAATTAGGAAGTGTGAAACTACCTCGAACAAAAGATGTAATGG 586
Query 421 TGAATGGCTTCACCGTGAAAGTGAAGTTCTGCGATACCTGTCAGCTATACCGTCCTCCTC 480
||||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 587 TGAATGGCTTCACTGTCAAAGTGAAGTTTTGCGATACCTGTCAGCTATATCGTCCTCCTC 646
Query 481 GTGCCTTTCACTGCTCAATCTGCAACAACTGTGTCCAAAGGTTTGATCATCACTGTCCAT 540
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 647 GTGCCTTTCACTGCTCAATCTGCAATAACTGTGTCCAAAGGTTTGATCATCACTGTCCTT 706
Query 541 GGGTAGGTCAGTGCATCGCCTTGCGTAACTATCCATTCTTCGTCTGTTTCTTATCATGTT 600
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 GGGTTGGTCAGTGCATCGCCTTGCGTAACTATCCATTCTTCGTCTGTTTCTTATCATGTT 766
Query 601 CAACACTCCTCTGCATCTATGTCTTT-GTCTTCTCATGGGTCAGCATGCTTAAAGTCCAT 659
||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||
Sbjct 767 CAACACTCCTCTGCATCTACGT-TTTCGTCTTCTCATGGGTCAGCATGCTTAAAGTCCAT 825
Query 660 GGGGAATTCTATGCTGTCCTTGCTGATGACTTAATATTAGGTGTTCTTGGCCTCTACTGC 719
||||||||||||| ||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 826 GGGGAATTCTATGTTGTTCTCGCTGATGACTTAATATTAGGTGTTCTTGGTCTCTACTGC 885
Query 720 TTTGTTTCAGTCTGGTTTGTTGGTGGACTTACTGTCTTCCACTTCTACCTTATCTGCACC 779
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 TTTGTTTCCGTTTGGTTTGTTGGTGGACTTACTGTCTTCCACTTCTACCTTATCTGCACC 945
Query 780 AACCAGACGACCTGTGAGAATTTTCGGTACCATTATGATAAGAAGGAAAACCCTTATCGA 839
||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 946 AACCAGACGACTTGTGAGAATTTTCGGTACCATTACGACAAGAAGGAAAACCCTTACCGA 1005
Query 840 AAGGGGATCTTAGAGAACTTCAAGGAACTGTTCTTTGCAAGAATCCCACCACCTTTGACC 899
|||||||||||||||||||||||||| || |||||||||| ||| ||||||||||||| |
Sbjct 1006 AAGGGGATCTTAGAGAACTTCAAGGAGCTATTCTTTGCAAAAATTCCACCACCTTTGATC 1065
Query 900 AATTTCAGAGATTGGGCGCCAGAAGAAGAAGACGATGTGGAGGTCGGATCCATAGCCTCT 959
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1066 AATTTCAGAGATTGGTCGCCAGAAGAAGAAGACGATGTGGAGGTTGGATCCATAGCCTCT 1125
Query 960 GAGCTAGGCAGAAACTTTGGTCTAAAAGACACGAAAATGAGCAGTGGCAAGTCTGATTCC 1019
||||||| |||| |||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1126 GAGCTAGTCAGAGCCTTTGGTCCAAAAGACACGAAAATGAGCAGTGGAAAGTCTGATTCC 1185
Query 1020 GAAGCTAGAGAACGGTAACAACAGTGGCACGGCTGTCA 1057
|||||||||||||||||||||| |||||||||||||||
Sbjct 1186 GAAGCTAGAGAACGGTAACAACGGTGGCACGGCTGTCA 1223
> AT2G40990.1 | Symbols: | DHHC-type zinc finger family protein
| chr2:17105097-17106773 REVERSE LENGTH=1236
Length=1236
Score = 652 bits (353), Expect = 0.0
Identities = 776/977 (79%), Gaps = 41/977 (4%)
Strand=Plus/Plus
Query 21 ATGTCTTCTC-AGAATCCTGAACGAAAAAGGATCTATCAAGTTTGGCCCGCCAAAAATAA 79
|||| ||||| || ||| | ||| || || ||||| ||| | ||||||| ||| ||||
Sbjct 55 ATGTTTTCTCAAG-ATCATAAACCCAAGAGAATCTACCAACTCTGGCCCGGCAACAATAG 113
Query 80 ATTTTACTGTGG-GGGAAGACTAGTGTTTGGTCCAGATGCATCGTCGCTTCTTTTGACCA 138
|||||| ||||| ||| |||||||| |||||||||||||||||||| || ||| |||| |
Sbjct 114 ATTTTATTGTGGAGGG-AGACTAGTCTTTGGTCCAGATGCATCGTCTCTCCTTCTGACAA 172
Query 139 CATG-TATGATTGGAGGACCAGCTATCACTTTCTGCATCA-GGATGGCTTATTTGATCAG 196
|| | |||||||||||| || ||| ||||||||||||| | | |||| || ||||||| |
Sbjct 173 CA-GCTATGATTGGAGGTCCTGCTCTCACTTTCTGCAT-ACGAATGGTTTTTTTGATCGG 230
Query 197 CCATCGTC-ACCCTTTCTTTCATTCTCTTACT-TTGATCGGTGCAATTCTT-CTCACAT- 252
| || | | ||||| || || ||||||| | ||| | |||||| || || ||||| |
Sbjct 231 AAAACG-CTATCCTTTGTTCCACTCTCTTA-TATTGTTGGGTGCACTT-TTGCTCAC-TG 286
Query 253 TCATGGCTTTTACTTTTCTCTTCTTGACATCATCGAGAGACCCCGGGATTATCCCAAGGA 312
|| ||| |||||| ||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 287 TCCTGGATTTTACATTTCTCTTCTTAACATCATCGAGAGACCCCGGGATTATCCCTAGAA 346
Query 313 ACAAAGAAGTGCCTGAGGCAGAGATTCCTC-ATGTCATCACCCAATCGACAGAATGGGTG 371
||||||||| ||||| ||||| | || || | ||||| ||||| |||| |||||
Sbjct 347 ACAAAGAAGCACCTGAAGCAGA-AGGGCTTGATATGATCACTCAATCCTCAGAGTGGGTA 405
Query 372 A-CTAACAAATTAGGAAATATGAA-ATTACCTCGAACAAAAGATGTAATGGTGAATGGCT 429
| | |||||| | || |||| || || ||||||||| || ||| || ||||||||||||
Sbjct 406 AAC-AACAAACTCGGTAATACAAAGAT-ACCTCGAACGAAGGATATATTGGTGAATGGCT 463
Query 430 TCACCGTGAAAGTGAAGTTCTGCGATACCTGTCAGCTATACCGTCCTCCTCGTGCCTTTC 489
||| || ||||| || || || ||||| ||| ||| |||||||||||||| |||| ||
Sbjct 464 ACACTGTCAAAGTTAAATTTTGTGATACATGTTTGCTTTACCGTCCTCCTCGCGCCTCTC 523
Query 490 ACTGCTCAATCTGCAACAACTGTGTCCAAAGGTTTGATCATCACTGTCCATGGGTAGGTC 549
|||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||| || |
Sbjct 524 ACTGTTCAATCTGTAACAACTGTGTTCAAAGGTTTGATCATCATTGTCCATGGGTTGGCC 583
Query 550 AGTGCATCGCCTTGCGTAACTATCCATTCTTCGTCTGTTTCTTATCATGTTCAACACTCC 609
| ||||| ||||| || |||||||||| |||| |||||||| ||||| |||||||||||
Sbjct 584 AATGCATAGCCTTACGAAACTATCCATACTTCATCTGTTTCATATCAACTTCAACACTCC 643
Query 610 TCTGCATCTATGTCTTTGTCTTCTCATGGGTCAGCATGCTTAAAGTCCATGGGGA-AT-T 667
||||| | || ||||||||||||||||||||||| |||||| | || || || | || |
Sbjct 644 TCTGCTTGTACGTCTTTGTCTTCTCATGGGTCAGTATGCTTGAGGTACACGGCAAGATGT 703
Query 668 CTATGC-TG-TCCTTGCTGATGACTTAATATTAGGTGTTCTTGGCCTCTACTGCTTTGT- 724
| | || || | | | |||||| |||| | |||||| |||||||||||| ||
Sbjct 704 -TGTTAATGGTCATCACAAACGACTTAGTATTTGTTGTTCTCATCCTCTACTGCTTCGTC 762
Query 725 -TTCAGTCTGGTTTGTTGGTGGACTTACTGTCTTCCA-CTTCTACCTTATCTGCACCAAC 782
|| ||||||||||| || || || ||||| ||||| || |||||| |||||||||||
Sbjct 763 GTT--GTCTGGTTTGTCGGCGGGCTCACTGTTTTCCATCT-CTACCTCATCTGCACCAAT 819
Query 783 CAGACGACCTGTGAGAATTTTCGGTACCATTATGATAAGAAGGAAAACCCTTATCGAAAG 842
||||| || | ||||||||| ||||| | ||||| ||||| |||||||||||| |||||
Sbjct 820 CAGACAACTTATGAGAATTTCCGGTATCGGTATGACAAGAAAGAAAACCCTTATGGAAAG 879
Query 843 GGGATCTT-AGAGAACTTCA-AGGAACTGTTCTTTGCAAGAATCCCACCACCTTTGACCA 900
|| |||| | ||||| | | | || |||||||||| ||||| ||||| || ||| ||
Sbjct 880 GGTCTCTTCA-AGAACCT-ATATGAGTTGTTCTTTGCCAGAATTCCACCTCCCATGATCA 937
Query 901 ATTTCAGAGATTGGGCGCCAGAAGAAGAAGACGATGTGGAGGTCGGATCCATAGCCTCTG 960
| |||||||| ||||| ||||| ||| ||||| | | |||| |||||||| || ||||
Sbjct 938 ACTTCAGAGACTGGGCTCCAGAGGAACCTGACGA-G-G-AGGTTGGATCCATTGCATCTG 994
Query 961 AGCTAGGCAGAAACTTT 977
|||||| | ||| ||||
Sbjct 995 AGCTAGACCGAA-CTTT 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51841639704
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5