BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938662
Length=755
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56950.2 | Symbols: SIP2;1 | small and basic intrinsic prote... 1203 0.0
> AT3G56950.2 | Symbols: SIP2;1 | small and basic intrinsic protein
2;1 | chr3:21078297-21079856 REVERSE LENGTH=1109
Length=1109
Score = 1203 bits (651), Expect = 0.0
Identities = 702/727 (97%), Gaps = 2/727 (0%)
Strand=Plus/Plus
Query 5 TCGTTGGAATCGAAAAATGGGACGAATCGGTTTAGTTGTGTCTGATCTGGTATTGTCGTT 64
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 197 TCGTTGGAATCGAAAAATGGGACGAATCGGTTTAGTAGTGACTGATCTGGTATTGTCGTT 256
Query 65 CATGTGGATATGGGCAGGAGTTCTGGTCAACATTTTAGTCCATGGAGTTCTTGGATTTAG 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 CATGTGGATATGGGCAGGAGTTCTGGTCAACATTTTAGTCCATGGAGTTCTTGGATTTAG 316
Query 125 CCGGAGCGATCCCTCCGGTGAGATCGTTCGTTATCTCTTCTCTATCATCTCCATGTTCAT 184
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 CCGGACCGATCCTTCCGGTGAGATCGTTCGTTATCTCTTCTCTATCATCTCCATGTTCAT 376
Query 185 CTTCGCCTTCCTTCAACAAATCACCAAAGGCGGACTTTATAATCCTTTGACCGCTTTGGC 244
|||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 377 CTTCGCCTACCTTCAACAAGCCACCAAAGGCGGGCTTTATAATCCTTTGACCGCTTTGGC 436
Query 245 TGCTGGAGTCTCCGGTGGCTTCAGCAGTTTCATCTTCTCCGTCTTCGTTCGAATCCCCGT 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 TGCTGGAGTCTCCGGTGGCTTCAGCAGTTTCATCTTCTCCGTCTTCGTTCGAATCCCCGT 496
Query 305 CGAGGTAATGGGATCAATTCTTGCGGTTAAGCATGTCATTCACGTATTCCCTGCGATTGG 364
||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 497 CGAGGTAATAGGATCAATTCTTGCGGTTAAGCATATCATTCACGTATTCCCTGAGATTGG 556
Query 365 GAAAGGACCTAAACTACAA-GTAGCAATCCATCACGGTGCTTTAACAGAAGGGATACTAA 423
|||||||||||||||| || |||||||| || ||||||||||||||||||||||||||||
Sbjct 557 GAAAGGACCTAAACTA-AATGTAGCAATTCACCACGGTGCTTTAACAGAAGGGATACTAA 615
Query 424 CATTCTTCATTGTACTGCTCTCATTGGGACTCACAAGAAAAATCCCGGGAAGTTTCTTCA 483
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 616 CATTCTTCATTGTACTGCTCTCAATGGGACTAACAAGAAAAATCCCGGGAAGTTTCTTCA 675
Query 484 TGAAGACTTGGATTGGTAGTCTTGCTAAGTTAACTCTTCATATTCTTGGCTCTGATCTTA 543
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 TGAAGACTTGGATCGGTAGTCTTGCTAAGTTAACTCTTCATATTCTTGGCTCTGATCTTA 735
Query 544 CCGGCGGATGCATGAACCCTGCAGCTGTTATGGGATGGGCTTATGCACGAGGTGAACATA 603
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 736 CCGGTGGATGCATGAACCCTGCAGCTGTTATGGGATGGGCTTATGCACGCGGTGAACATA 795
Query 604 TAACAAAAGAGCATTTACTTGTGTATTGGCTTGGACCTGTGAAGGCTACATTGCTTGCAG 663
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 796 TAACGAAAGAGCATTTACTTGTGTATTGGCTTGGACCTGTGAAGGCTACGTTGCTTGCAG 855
Query 664 TTTGGTTCTTCAAAGTTGTGTTTAAGCCTCTCACCGAAGAACAACAGAAACCTAAGGCTA 723
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 856 TTTGGTTCTTCAAAGTTGTGTTTAAGCCTCTCACCGAAGAACAAGAGAAACCTAAGGCCA 915
Query 724 AAACTGA 730
|| ||||
Sbjct 916 AATCTGA 922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36670927310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5