BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938670
Length=1073
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57020.1 | Symbols: | Calcium-dependent phosphotriesterase ... 950 0.0
> AT3G57020.1 | Symbols: | Calcium-dependent phosphotriesterase
superfamily protein | chr3:21098315-21100360 REVERSE LENGTH=1370
Length=1370
Score = 950 bits (514), Expect = 0.0
Identities = 581/614 (95%), Gaps = 2/614 (0%)
Strand=Plus/Plus
Query 459 TAGTGACAAGTATCATTTCAGGGACGTATTTTTCGTGGCTATCAGTGGGGAGCGGTCGGG 518
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 576 TAGTGACAAGTATCATTTCAGGGACGTATTTTTCGTGGCTGTCAGTGGGGAGCGGTCGGG 635
Query 519 AAGAGTGATCAGATACGATAAGAAGACGAAAGAGGCCAAAGTTGTCATGGACAACCTCGT 578
||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||
Sbjct 636 AAGAGTGATCAGATACGATAAGAAGACGAAAGAAGCCAAAGTTATCATGGACAATCTCGT 695
Query 579 TTGTAACAACGGTTTGGCTCTAAACAAAGACCGGTCTTTTCTAATAACATGCGAGTCCGG 638
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 696 TTGTAACAACGGTTTGGCTCTAAACAAAGACCGGTCTTTTCTAATTACATGCGAGTCCGG 755
Query 639 CACGAGTCTTGTCCACCGATACTGGATCAAAGGTCCCAAAGCCGGGACTCGTGATATCTT 698
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 756 CACAAGTCTTGTCCACCGATACTGGATTAAAGGTCCCAAAGCCGGGACTCGTGATATCTT 815
Query 699 TGCCAAGGTCCCGGGTTACCCTGACAACATCCGGCTGACATCGAGTGGAGACTTTTGGAT 758
||| |||||||| ||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 816 TGCGAAGGTCCCAGGTTACCCTGACAACATCCGGCTGACATCAACTGGAGACTTTTGGAT 875
Query 759 TGGTATACACTGCAAGAAAAACCTGCTAGGGCGATTGATTTTGAGGTATAAATGGCTTGG 818
|||| |||||||||||||||| ||| ||||| |||||||| ||| ||| |||||||||||
Sbjct 876 TGGTTTACACTGCAAGAAAAATCTGATAGGGAGATTGATTGTGAAGTACAAATGGCTTGG 935
Query 819 GAAATTGGTTGAAAAGACAGTAAAACTGGAGTACGTGATTGCTTTTATCAACGGATTTAA 878
||||||||| ||||||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct 936 GAAATTGGTAGAAAAGACAATGAAACTGGAGTACGTGATTGCTTTTATTAACGGATTTAA 995
Query 879 ACCGCAAGGAGTGGCCGTGAAAATCTCCGGGGAGACAGGG-GAGGTCCTTGAGGTACTTG 937
|||||| ||||| ||||||||||||||||| ||||| ||| ||||| |||||| ||||||
Sbjct 996 ACCGCACGGAGTCGCCGTGAAAATCTCCGGCGAGAC-GGGAGAGGTACTTGAGTTACTTG 1054
Query 938 AGGACAAAGAAGGAAAGACTATGAAGTATGTAAGCGAGGCTTATGAGAGAGATGATGGAA 997
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1055 AGGACAAAGAAGGAAAGACAATGAAGTATGTAAGCGAGGCTTATGAAAGAGATGATGGAA 1114
Query 998 AGTTATGGTTTGGGTCTGTTTACTGGCCAGCCGTTTGGGTTCTTGATCGCAAATGAGTGA 1057
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 AGTTGTGGTTTGGGTCTGTTTACTGGCCAGCCGTTTGGGTTCTTGATCGCAAATGAGTGA 1174
Query 1058 TTATGTTGTATCTA 1071
| ||||||||||||
Sbjct 1175 TCATGTTGTATCTA 1188
Score = 403 bits (218), Expect = 2e-111
Identities = 255/273 (93%), Gaps = 1/273 (0%)
Strand=Plus/Plus
Query 6 TTGTTCCGGCGAAAAAATGCCCACTAATCACAAAATTCCGACTTGGTTTGCCGTTCCGAC 65
||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||| |
Sbjct 42 TTGTTCCGGCGGAAAAATGCCCATTAATCAGAAAATTCCGACTTGGTTTGCCGTTCCGGC 101
Query 66 TGTGTTGGCTGTCTTGTCCGTAGTCTTGTATCAGATCTTAATTGTTCCGGAAAATTTAGA 125
||| || ||||||||||||||| ||| |||||| | ||||||||| ||||||||||||||
Sbjct 102 TGTTTTTGCTGTCTTGTCCGTAATCTCGTATCAAACCTTAATTGTGCCGGAAAATTTAGA 161
Query 126 GGGCACCAAAAATGTATTGACAATGGCTAAAACCATTCCAATTCCTGTTACTGGACCGGA 185
|||| ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 162 GGGCGCCAAAAATGTATTGACAATGGCTAAGACCATACCAATTCCTGTCGCTGGACCGGA 221
Query 186 GAGCATTGAGTTTGACCCTAAAGGAGAAGGTCCTTATGCTGCGGTCGTGGACGGCCGTAT 245
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 222 GAGCATTGAGTTTGACCCAAAAGGAGAAGGTCCTTATGCTGCGGTCGTGGACGGCCGTAT 281
Query 246 TCTCAAGTGGCGCGGCGATGATCATCGGCTGGG 278
||||||||||||||||||||||| |||||||||
Sbjct 282 TCTCAAGTGGCGCGGCGATGATC-TCGGCTGGG 313
Score = 270 bits (146), Expect = 2e-71
Identities = 167/177 (94%), Gaps = 2/177 (1%)
Strand=Plus/Plus
Query 277 GGGAATTGTTC-AAAACATGAAGTAGTGCCTACTTGTGGAAGGCCATTGGGACTTACTTT 335
||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 343 GGGAACTGTTCAAAAAC-TGAAGTAGTGCCTACTTGTGGAAGGCCATTAGGACTTACTTT 401
Query 336 CGAGAAGAAAACGGGCGATTTGTACATCTGCGATGGTTACTTGGGGCTCATGAAGGTTGG 395
||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 402 CGAGAAGAAAACGGGAGATTTGTACATATGTGATGGTTACTTGGGGCTCATGAAAGTTGG 461
Query 396 ACCAGAGGGAGGCTTGGCCGAGTTAGTTGTTGATGAAGTCGAAGGTCGTAAAGTTAT 452
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 462 ACCAGAGGGAGGCTTGGCCGAGTTAATTGTTGATGAAGCCGAAGGTCGTAAAGTTAT 518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52559970615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5