BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938677
Length=295
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57062.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 281 2e-75
> AT3G57062.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:21121346-21121878
FORWARD LENGTH=533
Length=533
Score = 281 bits (152), Expect = 2e-75
Identities = 172/182 (95%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 114 AAAAGCTTTCAGATGGCGATGCCGCTGGGCATGGCGATGTATCTGATGAGAATGGTTTGG 173
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 86 AAAAGCTTTGAGATGGCGATGCCGCTGGGCATGGCGATGTATCTGATGAGAATGGTTTGG 145
Query 174 TTTTCTCTGAGTGGTTGGGTTTTCACTTGCGTGGCTATTGCTGACGAAATCGCTGGCTCT 233
|||||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||
Sbjct 146 TTTTCTCTGAGTGGTTGGGTTTTCACTTGCGTGGCTATCGCTGATGAGATCGCTGGTTCT 205
Query 234 CTTAGAAACGGAGATATTGGTCCTTTCCATGTCGGATGATCGTATTCGAGATCTTTAGCT 293
|| |||||||||||||||||||||||||| |||||||||| | |||||||||| ||||||
Sbjct 206 CTGAGAAACGGAGATATTGGTCCTTTCCACGTCGGATGATTGAATTCGAGATCCTTAGCT 265
Query 294 CT 295
||
Sbjct 266 CT 267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13622559979
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5