BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938681
Length=554
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57090.1 | Symbols: BIGYIN, FIS1A | Tetratricopeptide repeat... 902 0.0
> AT3G57090.1 | Symbols: BIGYIN, FIS1A | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr3:21128530-21130189 FORWARD
LENGTH=818
Length=818
Score = 902 bits (488), Expect = 0.0
Identities = 533/555 (96%), Gaps = 2/555 (0%)
Strand=Plus/Plus
Query 1 AAAGCTCAAAATCGCCTTCAATGGATGCTAAGATCGGACAATTCTTTGACTCCGTCGGTT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 AAAGCTCAAAATCGCCTTCAATGGATGCTAAGATCGGACAATTCTTTGACTCCGTCGGTA 137
Query 61 CCTTCTTCAGCGGCAGCGATAAGATCCCATGGTGCGACGGAGATGTCATCGCTGGGTGTG 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 138 CTTTCTTCAGCGGCAGCGATAAGATCCCATGGTGCGACGGAGATGTCATCGCTGGATGTG 197
Query 121 AAAGAGAGGTTCGAGAGGCCACAGATGCTGGCTCTGAAGATCTGAAGAAAGAGTGCTTGA 180
|||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||
Sbjct 198 AAAGAGAGGTTCGAGAGGCCACAGATTCTGGCACTGAAGATCTTAAGAAAGAGTGCTTGA 257
Query 181 TGCGATTGTCGTGGGCTCTTGTTCATTCCCGTCAAACCGAAGATGTTCAACGCGGAATAG 240
|||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||
Sbjct 258 TGCGATTGTCATGGGCCCTTGTTCATTCCCGTCAAACGGAAGATGTTCAACGTGGAATAG 317
Query 241 CCATGCTTGAAGCATCTCTGGAAAGCAGTGCCCCTCCTTTAGAGGACCGAGAGAAGCTCT 300
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 318 CCATGCTTGAAGCATCTCTGGAAAGCAGTGCCCCTCCATTGGAGGACCGAGAGAAGCTCT 377
Query 301 ATCTTCTTGCTGTTGGATATTACAGAAGTGGGGACTACTCGAA-GAGCAGGCAGCTCGTG 359
|||||||||||||||| ||||||||||||||| | ||||| || ||||||||||||||||
Sbjct 378 ATCTTCTTGCTGTTGGGTATTACAGAAGTGGGAATTACTC-AAGGAGCAGGCAGCTCGTG 436
Query 360 GACCGCTGTATTGAGATGCAAGCTGATTGGAGACAAGCTTTGGTCCTAAAGAAGACCATC 419
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 GACCGCTGTATCGAGATGCAAGCTGATTGGAGACAAGCTTTGGTCCTAAAGAAGACCATC 496
Query 420 GAAGACAAAATCACAAAGGATGGTGTTATAGGGATAGGGATCACTGCTACAGCCTTTGGC 479
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 497 GAAGACAAAATCACAAAGGATGGTGTTATAGGGATAGGGATCACGGCTACAGCCTTTGGA 556
Query 480 GCCGTGGGTCTCATAGCCGGTGGTATCGTAGCAGCGATGTCTCGCAAAAAATGAAAACCA 539
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 557 GCTGTGGGTCTCATAGCCGGTGGTATCGTAGCAGCGATGTCTCGCAAGAAATGAAAACCA 616
Query 540 CAACCATGACTTCTT 554
|||||||||||||||
Sbjct 617 CAACCATGACTTCTT 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26573863763
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5