BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938682
Length=1117
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57100.1 | Symbols: | Protein of unknown function (DUF677) ... 1399 0.0
> AT3G57100.1 | Symbols: | Protein of unknown function (DUF677)
| chr3:21133013-21134482 REVERSE LENGTH=1470
Length=1470
Score = 1399 bits (757), Expect = 0.0
Identities = 1000/1115 (90%), Gaps = 26/1115 (2%)
Strand=Plus/Plus
Query 4 TTC-TTTTGCTTTGC-AAAAA-GATGAT--AA-TTTGCAATCCTTTCTTGAGACTCATTC 57
||| |||| || ||| ||||| || ||| || |||||||||||||||||||||||||||
Sbjct 122 TTCTTTTTACTCTGCAAAAAACGACGATGAAATTTTGCAATCCTTTCTTGAGACTCATTC 181
Query 58 TCAAGCGTAAACCGATCTCCATGGTTTCTCCAACAATGTTTCTCCTATCGCCACCTAGCA 117
||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||
Sbjct 182 TCAGGCGTAAACCGATCTCCATGATTTCTCCAACAATGTTTCTCCTATCGTCACCTACCA 241
Query 118 CTTCGTCGTCCATCGGCCACACTAATGGGATGCTGCGATCGCGATCAGAAGATAATCTAA 177
||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||| |
Sbjct 242 CTTCGTCTTCCATCGGCCACAGTAATGGGATGCTGCGATCACGATCAGAAGATAATCTTA 301
Query 178 AGAAACTTGGCGACTGCATGGAGAATATGGATGAAGACGTCTCTAAACTCTTCATCGA-A 236
| ||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 302 ACAAACTTGGCGAGTGTATGGATAATATGGACGAAGACGTCTCTAAACTCTTCATCGAGT 361
Query 237 TTCGAGCAAACTGATCTCCGCGAAGATCCCGACTTGTTCCGTCTTCTCAACCACTACTTC 296
||| | |||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 362 TTC-AACAAACTGATCTCCGTGAAGATCCCGACTTGTTCCGTCTTCTCAACCATTACTTC 420
Query 297 ACCACTAGCAAAGGTGTTTCCCAGCTCTGCGAGTCTCTTAGAACATGCTTGGAGAGAGCC 356
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||
Sbjct 421 ACCACTAGCAAAGGTGTTTCCCAGCTCTGCGAGTCTCTTAGAACTTGCTTAGAGAGATCC 480
Query 357 GAGAACAACGAGTGTCTCTTAATTGATGAAGCACTA-TCTGATTTTGAGCAAGAAAAATT 415
||||||||||||||||||||| |||||||||||||| | |||||||||| ||||||||
Sbjct 481 GAGAACAACGAGTGTCTCTTACTTGATGAAGCACTAGT-TGATTTTGAGTTGGAAAAATT 539
Query 416 GGGTTATGGCGGGTTACTTCTCGAACAAGCTAGCTTCAGAAAAACCTTCCGAGATCTGAG 475
|||||||| ||| | | |||||| ||||||| ||||||||||||| ||||||||||||
Sbjct 540 AGGTTATGGTGGG-T-C-ACTCGAAGAAGCTAGTTTCAGAAAAACCTACCGAGATCTGAG 596
Query 476 GAACTTCAATGCCTTTT---ATAACAA------TGACGACGACGACTTGGATTATTGCGA 526
||||||||| ||||||| | ||||| ||| || ||||||||||||||||||||
Sbjct 597 GAACTTCAACGCCTTTTACAACAACAATTCCGGTGAAGAAGACGACTTGGATTATTGCGA 656
Query 527 ATTTCTCAGAAAATTTCAGACCTGTCATGAAGAGCTGGCGAAGATGATCGTTAAACTGGA 586
||||||||||| |||||||| |||||||||||| ||||||||||| |||||||||||||
Sbjct 657 GTTTCTCAGAAAGTTTCAGACTTGTCATGAAGAGTTGGCGAAGATGGTCGTTAAACTGGA 716
Query 587 GAAGACTATGAAAGAAATCGACAAAAAGCTGAGACGTGTTCGAGGACGAAGAGCAATTGT 646
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 717 GAAGACGATGAAAGATATCGACAAAAAGCTGAGACGTGTTCGAGGACGAAGAGCGATTGT 776
Query 647 TACCGCAGCTTTACTTGCTCCAGTAATTGCTGCAATCTTCCTGAGCAAACTCATTGCCGG 706
|| ||||||||||| ||||| |||||||||| ||||||| |||| |||||| |||||||
Sbjct 777 CACGGCAGCTTTACTAGCTCCGGTAATTGCTGTAATCTTCTTGAGTAAACTCGTTGCCGG 836
Query 707 ATTAGTTCCTATGGAGGGATTGACTACATTTGTAGCTTCAAGGTGGAGAAAATCGACCGA 766
|||||||||||| |||||||||| ||| || ||||||||||| ||||||||||| || ||
Sbjct 837 ATTAGTTCCTATAGAGGGATTGAGTACCTTCGTAGCTTCAAGATGGAGAAAATCAACGGA 896
Query 767 ATCATTGAAACGGGAGAAGACGGCCATGAGTTCTATGGAAAGAGGAACGA-CGGTTGCTC 825
||| |||||| |||||||||||||||||||||| ||||||||||||| | || | ||||
Sbjct 897 ATCTTTGAAAAGGGAGAAGACGGCCATGAGTTCAATGGAAAGAGGAATTATCG-TGGCTC 955
Query 826 TCAAACAAGTTGAGAAAATTAGTAAACTCGTGAGTCGATTGGA-TACTGTGGAGAGGTCG 884
|||| ||||| |||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 956 TCAAGCAAGTGGAGAAAATTAGTAAACTCGTGAGTCGATTGGAGT-CTGTGGAGAGGTCA 1014
Query 885 ATTCGTGTGACTGCGGAGTTTGCCGTTAATAAAAGGTCTCCGTTGACTATAGCTATGGGA 944
||| || |||| ||||||||||| ||||| ||||||||| || || | |||||||| ||
Sbjct 1015 ATTAGTTTGACGGCGGAGTTTGCTGTTAAGAAAAGGTCTTCGGTGGTTGTAGCTATGAGA 1074
Query 945 GATGTGGAGGAGGAACGAAAGAGGTTGAAGTCAACTCTCGTTGACTTAGACAGAGAGACC 1004
|| ||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1075 GAGGTGGAAGAGGAACGGAAGAGGTTGAAGTCAACTCTCGTTGACCTAGACAGAGAGACT 1134
Query 1005 GGACTTTGCAATGGTTTTGCTCAGTTTGGGCGTACGGTGGCTTTGGAGAAGATTACTGAG 1064
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1135 GGACTTTGCAATGGTTTTGCTCAGTTTGGTCGTACGGTGGCTCTGGAGAAGATTACTGAG 1194
Query 1065 TTTCTTTCTCGTGGCAACAAGAGCTCGAAATAGTT 1099
||||||||||||||| |||||||||| ||||||||
Sbjct 1195 TTTCTTTCTCGTGGCGACAAGAGCTCCAAATAGTT 1229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54768794595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5