BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938685
Length=2432
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57140.1 | Symbols: SDP1-LIKE | sugar-dependent 1-like | chr... 3818 0.0
> AT3G57140.1 | Symbols: SDP1-LIKE | sugar-dependent 1-like | chr3:21150422-21153507
REVERSE LENGTH=2837
Length=2837
Score = 3818 bits (2067), Expect = 0.0
Identities = 2304/2419 (95%), Gaps = 13/2419 (1%)
Strand=Plus/Plus
Query 1 CTCATCTTTGAGTCGGAGACAATGGATATAAGCAACGAAGCAGGTGTTGATGCGTTCTCA 60
||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 91 CTCGTCTTCGAGTCGGAGACAATGGATATAAGCAACGAAGCAGGCGTTGATGCGTTCTCA 150
Query 61 ATTATAGGACCCACAACTATAATCGGAAGAACAATTGCCTTCCGGATCTTGTTCTGCAAC 120
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 151 ATTATAGGACCCACGACTATAATCGGAAGAACAATTGCCGTCCGGATCTTGTTCTGCAAC 210
Query 121 TCCGTGTCTATATTCAGACACAAAGTCTTCAGATTTCTCATGTTTTTCCTCAGAGGAGGT 180
|||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||
Sbjct 211 TCCGTGTCTATATTCAGACACAAAGTTTTCAGAATTCTCAAATTTTTCCTCAGAGGAGGT 270
Query 181 AGGGTTTTACTGTCACCGTTTGTGTCCTTACTACATCCCAGGAATCCCCAAGGGATATTA 240
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 271 AGGGTTTTACTATCACCGTTTGTGTCCTTGCTACATCCCAGGAATCCACAAGGGATATTA 330
Query 241 GTAATGGTGACGACGATGGCCTTTCTGTTGAATCGCTACACCAGCTTAAAAGCAAAGGCT 300
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 331 GTAATGGTGACGACGATGGCCTTTCTGTTGAACCGCTACACAAGCTTAAAAGCAAAGGCT 390
Query 301 GAGATGGCTTACAGGAGGAAATTCTGGAGGAACATGATGAGAGCTGCATTGACATACGAG 360
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 391 GAGATGGCTTACAGGAGAAAATTTTGGAGGAACATGATGAGAGCTGCATTGACATATGAG 450
Query 361 GAATGGTCTCACGCCGCAAAGATGCTCGATAAAGAGACTCCGAAGGTGAACGAGACAGAT 420
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 451 GAATGGTCTCACGCCGCAAAGATGCTAGATAAAGAGACTCCCAAGGTGAACGAGACAGAT 510
Query 421 CTTTTTGATGTGGAGCTCGTGAGTAATAAGCTTGAGGAGCTTAAGCATAGACGTCATGAG 480
|||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 511 CTTTTTGATGTGGAGCTCGTAAGTAATAAGCTTGATGAACTTAAGCATAGACGTCATGAG 570
Query 481 GGCTCTCTGAGAGACATTATCTTCTGTATGAGAGCTGATCTTGTGAGAAATTTAGGTAAT 540
|||||||| ||||||||||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 571 GGCTCTCTTAGAGACATTATTTTCTGTATGAGAGCTGATCTTGTGAGAAATCTCGGTAAT 630
Query 541 ATGTGTAACCCTGAGCTTCACAAGGGAAGGCTTCACGTACCGAGACTCATCAAAGAGTAT 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 631 ATGTGTAACCCTGAGCTTCACAAGGGAAGGCTTCACGTGCCGAGACTCATCAAAGAGTAT 690
Query 601 ATCGATGAGGTCTCTACACAGCTTAGGATGGTTTGCGACATGGACACTGAAGAGCTTTCT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 ATCGATGAGGTCTCTACACAGCTTAGGATGGTTTGCGACATGGACACTGAAGAGCTTTCT 750
Query 661 CTGGAGGAGAAACTCTCTTTTATGCATGAGACGAGACACGCATATGGAAGAACGGCTCTG 720
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 751 CTGGAGGAGAAACTTTCTTTTATGCATGAGACCAGACACGCGTATGGAAGAACAGCTCTA 810
Query 721 CTTCTGAGCGGAGGAGCTTCTCTAGGGGCTTTCCATCTTGGTGTGGTCAAGACGCTTGTG 780
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 811 CTTCTCAGTGGAGGAGCTTCTCTTGGGGCTTTCCATCTTGGTGTGGTCAAGACGCTTGTG 870
Query 781 GAACATAAGCTCTTGCCGAGAATTATAGCCGGTTCAAGTGTGGGGTCTGTAATGTGTGCG 840
||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 871 GAACATAAGCTATTGCCAAGAATTATAGCTGGTTCAAGCGTGGGGTCTGTAATGTGTGCG 930
Query 841 GTTGTGGGGACAAGGTCATGGCCTGAGTTACAGAGCTTCTTTGAAGGCTCTTGGCATGCT 900
||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||
Sbjct 931 GTTGTGGGGACAAGGTCATGGCCCGAGTTGCAGAGCTTCTTTGAAGGGTCCTGGCATGCT 990
Query 901 TTGCAGTTCTTTGATCAGATGGGAGGGATTTTCACTACTGTGAAACGGGTTATGACTCAA 960
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 991 CTGCAGTTCTTTGATCAGATGGGAGGAATTTTCACTACTGTGAAGCGGGTTATGACTCAA 1050
Query 961 GGCGCAGTCCATGAGATCCGGCATTTGCAATGGAAGTTGAGGAATCTCACCAACAATCTC 1020
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1051 GGCGCAGTCCATGAGATCCGGCATCTGCAATGGAAGTTGAGGAATCTCACCAACAATCTC 1110
Query 1021 ACATTCCAAGAAGCTTACGATATTACAGGACGGATTCTAGGGATAACAGTTTGTTCCCTG 1080
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1111 ACATTCCAAGAAGCTTACGACATAACAGGACGGATTCTAGGGATAACAGTTTGTTCCCTG 1170
Query 1081 AGGAAACACGAGCCGCCTAGATGTCTCAATTACCTGACTTCGCCTCATGTTGTGATATGG 1140
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1171 AGGAAACACGAGCCGCCTAGATGTCTCAATTATCTGACTTCGCCTCATGTTGTGATATGG 1230
Query 1141 AGTGCAGTGACTGCCTCTTGTGCTTTCCCAGGTCTGTTCGAGGCTCAAGAACTCATGGCC 1200
|||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1231 AGTGCAGTGACTGCATCTTGTGCTTTCCCAGGTCTTTTCGAAGCTCAAGAACTCATGGCC 1290
Query 1201 AAAGATAGAACTGGAGAGATTGTTCCATATCACCCACCTTTTAACTTAGATCCTGAAGAG 1260
||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 1291 AAAGACAGAACTGGAGAGATTGTTCCTTATCATCCACCATTTAACTTAGATCCTGAAGAG 1350
Query 1261 GGCTCAGCATCAGTTCGGCGCTGGAGGGACGGTAGTTTAGAGATGGATTTACCGATGATA 1320
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1351 GGCTCAGCATCAGTTCGGCGCTGGAGGGACGGTAGTTTGGAGATGGACTTACCGATGATA 1410
Query 1321 CAACTCAAAGAGCTTTTCAATGTCAACCATTTCATTGTCAGTCAAGCCAACCCTCATATA 1380
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1411 CAACTCAAAGAGCTTTTCAATGTCAACCATTTCATTGTCAGTCAAGCCAACCCTCACATA 1470
Query 1381 GCACCATTCTTGAGGATGAAGGAGTTTGTAAGAGCTTGTGGAGGTCGATTTGCAGCAAAG 1440
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1471 GCACCCTTCTTGAGGATGAAGGAGTTTGTGAGAGCTTGTGGAGGTCGATTTGCAGCAAAG 1530
Query 1441 CTCGCGCAACTCGCGGAGATGGAAGTGAAGCATAGATGTAATCAAGTACTAGAACTCGGG 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1531 CTCGCGCAACTCGCGGAGATGGAAGTGAAGCATAGATGTAATCAAGTACTAGAACTCGGG 1590
Query 1501 CTTCCTCTACGAGAAGTAGCTTCACTATTTGCTCAAGAATGGGAAGGCGATGTCACTATC 1560
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1591 CTTCCTCTAAGAGAAGTAGCTTCACTATTTGCTCAAGAATGGGAAGGCGATGTCACAATT 1650
Query 1561 GTCATGCCAGCTACTTTTTCTCAGTACTTGAAGATCATACAGAACCCAAGCAATGTAGAG 1620
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1651 GTCATGCCAGCTACTTTTTCTCAGTACTTGAAGATCATACAAAATCCAAGCAATGTAGAG 1710
Query 1621 ATTCAAAAGGCGGCAAATCAAGGAAGGAGATGCACCTGGGAGAAACTCGCAGTAATCAAA 1680
||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1711 ATTCAAAAGGCAGCAAATCAAGGAAGGAGATGCACCTGGGAAAAACTAGCAGTAATCAAA 1770
Query 1681 GCAAACTTTGGGATCGAACTAGCACTCGACGAGTGCGTCGCCGTTCTTAACCACATGCGC 1740
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1771 GCAAACTTCGGGATCGAACTAGCACTCGACGAGTGCGTCACCGTTCTTAACCACATGCGC 1830
Query 1741 CGCCTAAAACGCAGCGCTGAAAGAGCCGCTGCTTTCTCCGCCATCTCATCCTCACCGCCA 1800
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| || |||
Sbjct 1831 CGCCTTAAACGCAGCGCAGAAAGAGCCGCTGCTTTCTCCGCCATCTCTTCCTCTCCACCA 1890
Query 1801 TCTAAACACCTTTTGGCCGGAACCAATAGATTCAACGCCTCCAAAAGAATCCCTTCCTGG 1860
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1891 TCTAAACATCTTTTGGCCGGAACCAATAGATTCAACGCCTCCAAAAGAATCCCTTCCTGG 1950
Query 1861 AACTGTATAGCTCGTCAGAACTCATCCGGATCCGTCGACGATGATGTACTAGCTGAAGCT 1920
|| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 1951 AATTGTATAGCTCGTCAGAACTCCTCCGGATCCGTCGATGATGATGTCCTAGCTGAAGCT 2010
Query 1921 TCACGGTTGTACCAGCATATCGTGGTTGGATCCGGGAGGAATAGTAATCGAACCAGCAAC 1980
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 2011 TCACGGTTGTACCAGCATATCGTGGTTGGATCTGGGAGGAATAGTAATCGAACCAGTAAC 2070
Query 1981 TTAAGCCATTCCTATGACGCAGGAAGCGAATGTGATTCTCCAGAAGCTGAAGACTGGACT 2040
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2071 TTAAGCCATACCTATGACGCAGGAAGCGAATGTGATTCTCCAGAAGCTGAAGATTGGACT 2130
Query 2041 CGATCTGGTGGACCATTGATGAGGACCAATTCTGCTCAGATGTTCACAGACTACGTCCAG 2100
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2131 AGATCTGGCGGACCATTGATGAGGACCAATTCTGCTCAGATGTTCACTGACTACGTCCAG 2190
Query 2101 AATCTCGACGCCGTTGATCCCGAACAGATTAGAGCTTCGGAGAACGATTCGATTATGGCT 2160
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 2191 AATCTCGACGCCGTTGATCCGGAACAGATTAGAGCTTCGGAGAACGATTCGATTGTAGCT 2250
Query 2161 GCTTCTTCGTCTTCTCATAGCATCACTGTCACGGAAGGCGATTATCTGCAGACGGGAAGA 2220
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2251 GCTTCGTCGTCTTCTCATAGCATCACTGTCACGGAAGGCGATTATCTTCAGACGGGAAGA 2310
Query 2221 ACACACAACGGATTCGTGTTGAATCTCGTAAGAGGAGAGAATTTGAGGATGAAT-CAAGA 2279
|||||||| ||||| |||||||||||||| |||||||||||||||||||||||| || ||
Sbjct 2311 ACACACAATGGATTTGTGTTGAATCTCGTTAGAGGAGAGAATTTGAGGATGAATTCA-GA 2369
Query 2280 TCTGGAAGATAGCCCAAACGAAAGTGAAACTCCGGAGA----G-----CGTGCAA-TTGG 2329
| ||||||||||| |||||||||||||| |||||||| | ||||||| |||
Sbjct 2370 GCCGGAAGATAGCCAAAACGAAAGTGAAATTCCGGAGACTCCGGAAAGCGTGCAACTTG- 2428
Query 2330 ATTCGCCGGAAAAGGACATTATTGACGGAGATAGCTCGGCGTCGGAAGACGGAGACGCTC 2389
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2429 ATTCGCCGGAAAAGGACATTATTGACGGAGAGAGCTCGGCGTCGGAAGACGGAGACGCTC 2488
Query 2390 AGGCGAATCTAATCCATGA 2408
|||||||||||||||||||
Sbjct 2489 AGGCGAATCTAATCCATGA 2507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120782511270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5