BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938687
Length=277
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57157.1 | Symbols: | other RNA | chr3:21157011-21157247 FO... 388 1e-107
> AT3G57157.1 | Symbols: | other RNA | chr3:21157011-21157247
FORWARD LENGTH=237
Length=237
Score = 388 bits (210), Expect = 1e-107
Identities = 228/237 (96%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 21 ATGGCCGGACTTCAATACAGTTTCTTCCCGACCGACTTCTTCTACCCACGAGCTTCTCCT 80
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCGGCCTTCAATATAGTTTCTTCCCGACCGACTTCTTCTACCCACGAGCTTCTCCT 60
Query 81 CCGGCTACAACAAGCCTTGTAGCCACCAATCCGAAACTAGAGAAAATCCAAAAGAGAGAT 140
|||||||| ||||||||||| ||||||||||| ||||| ||||||| |||||||||||||
Sbjct 61 CCGGCTACGACAAGCCTTGTCGCCACCAATCCAAAACTGGAGAAAACCCAAAAGAGAGAT 120
Query 141 GGTTTAGTAGTGATTGATGAAACTCGTGCTTCTTTGTCTCTGTTTATACGTGAAAAGAAG 200
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 GGTTTAGTAGTGATTGATGAAACTCGTGCTTCTCTGTCTCTGTTTATACGTGAAAAGAAG 180
Query 201 ACTAATCAGTCACAAACATGGAAGAAGAAGCCACTTTGGATCGAAGATGACATGTGA 257
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 ACTAATCAGTCACAAACATGGAAGAAGCAGCCACTTTGGATCGAAGATGACATGTGA 237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12717740497
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5