BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938693
Length=1321
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57220.1 | Symbols: | Glycosyl transferase family 4 protein... 2091 0.0
AT2G41490.1 | Symbols: GPT | UDP-glcnac-adolichol phosphate glc... 1430 0.0
> AT3G57220.1 | Symbols: | Glycosyl transferase family 4 protein
| chr3:21174455-21177119 FORWARD LENGTH=1557
Length=1557
Score = 2091 bits (1132), Expect = 0.0
Identities = 1262/1324 (95%), Gaps = 12/1324 (1%)
Strand=Plus/Plus
Query 4 TAGCCAACGGATCCGTCATGGCAGCTCGTAAGAGAGCTTCTTCAGTCACTAATTCGGCGA 63
||||||||||||||| |||| | |||||||||||| || ||||||| | ||||||| |
Sbjct 45 TAGCCAACGGATCCGCCATGACTGCTCGTAAGAGAACTCCTTCAGTGTCCAATTCGGAG- 103
Query 64 AAAC-AGCTCTATCTGAACAGGCATCGTCCCCGACGGAGCTGAAGA-CTGTAGTTTCCGG 121
|||| ||||||| |||||| ||||| |||||||||| | ||||| || | ||||||||
Sbjct 104 AAACTAGCTCTACCTGAACCTGCATCTTCCCCGACGGTTCAGAAGACCTCT-GTTTCCGG 162
Query 122 CGAGGATTTCC-GTCTCGCGCCGCCCAAATTGGGCGTGATCTTT-GTGATCTCTTCGCTT 179
|||||||||| | ||||||||||| |||||||||||||| ||| |||||||||||||||
Sbjct 163 AGAGGATTTCCAG-CTCGCGCCGCCGAAATTGGGCGTGAT-TTTCGTGATCTCTTCGCTT 220
Query 180 CTGTGTTCGCTTTATCTTTACCTTCTCTGTTTCCACTACAATGTTGACAATGAGCTCAAG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 CTGTGTTCGCTTTATCTTTACCTTCTCTGTTTCCACTACAATGTTGACAATGAGCTCAAG 280
Query 240 CGTCCGATCCTCATTAACGCTGGGCTTAGTTTGGTTGGGTTCTTTGTCACACTCAAATTG 299
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 281 CGTCCGATCCTCATTAACGCTGGGCTTAGCTTGGTTGGATTCTTTGTCACACTCAAGTTG 340
Query 300 ATTCCTGTAGCTGCTAGATACGTTCTGAGGCGTAACATGTTTGGTTTTGATATTAACAAA 359
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 341 ATTCCTGTAGCTGCTAGATACGTTCTGAGGCGTAATATGTTTGGTTTTGATATCAACAAA 400
Query 360 AGAGGCACTCCTCAAGGAGAAGTTAAAGTGCCTGAGTCATTGGGAATTGTTGTCGGTATT 419
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 401 AGAGGCACTCCTCAAGGAGAAGTTAGAGTGCCTGAGTCATTGGGAATTGTTGTCGGTATT 460
Query 420 GTCTTCTTGATAGTGGCGATAGTGTTTCAGTTCTTTAATTTCACTGAAGATTCGGTGTGG 479
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 461 GTCTTCTTGATAGTGGCGATTGTATTTCAGTTCTTTAATTTCACTGAAGATTCGGTGTGG 520
Query 480 CTTGTGGAGTATAATGCAGCACTGGCGTCTATTTGCTTCATGATTTTGCTTGGATTTGTA 539
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 521 CTTGTGGAGTATAATGCAGCACTGGCGTCTATTTGCTTCATGATATTGCTTGGATTTGTA 580
Query 540 GATGACGTCCTTGATGTGCCTTGGAGAGTGAAACTTCTCTTGCCATCTTTTGCAACCCTT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 GATGACGTCCTTGATGTGCCTTGGAGAGTGAAACTTCTCTTGCCATCTTTTGCAACCCTT 640
Query 600 CCATTGTTGATGGCTTATGCTGGACATACAACTATCGTCATACCGAAACCTCTT-GTTTC 658
||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 641 CCACTGTTGATGGCTTATGCTGGACATACAACTATCGTCATACCGAAACCT-TTAGTTTC 699
Query 659 TTATATTGGCTTGGAAGTGTTTGATCTAGGACGGATATATAAGTTATATATGGCGCTACT 718
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 700 TTATATTGGCTTGGAAGTGTTTGATCTAGGACGTATATATAAGTTATATATGGCGCTACT 759
Query 719 AGCTGTCTTTTGCACAAATTCTATAAACATTCATGCTGGTTTGAATGGCCTAGAAATCGG 778
||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 760 GGCTGTCTTTTGCACAAATTCTATTAACATTCACGCTGGTTTGAATGGCCTTGAAATCGG 819
Query 779 TCAAACCGTAGTTATTGCAGCTGCTATTCTGATACACAACATTATGCAAATCGGAGTATC 838
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 820 TCAAACCGTAGTTATTGCAGCTGCTATTCTGATACACAACGTTATGCAAATCGGAGCATC 879
Query 839 TGTTGATACTGAGTATCATCAAGCTCATGCCTTCTCAATCTATCTTACTCAGCCATTGAT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 TGTTGATACTGAGTATCATCAAGCTCATGCCTTCTCAATCTATCTTACTCAGCCATTGAT 939
Query 899 GGCAACATCCTTGGCAATGCTTGCCTACAATTGGTACCCTTCTGCAGTTTTTGTTGGAGA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 GGCAACATCCTTGGCAATGCTTGCCTACAATTGGTACCCTTCTGCAGTTTTTGTTGGAGA 999
Query 959 CACTTACACAGTCTTTGCCGGAATGACTATGGCAGTTGTTGGCATTCTCGGTCACTTCAG 1018
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 CACTTACACAGTCTTTGCTGGAATGACTATGGCAGTTGTTGGCATTCTCGGTCACTTCAG 1059
Query 1019 TGAAACCCTCTTAATCTTTTTTCTTCCTCAAGTGTTGAACTTTCTTT-TGTCGCTTCCGC 1077
||||||||| ||||||||||||||||||||||||||||||||| || |||| |||||||
Sbjct 1060 TGAAACCCTGTTAATCTTTTTTCTTCCTCAAGTGTTGAACTTT-TTACTGTCACTTCCGC 1118
Query 1078 AGCTTGCTGGCATTGTGAAATGTCCACGACATCGTCTCCCCAAGTTTGATCCTGCTACGG 1137
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1119 AGCTTGCTGGCATTGTCAAATGTCCACGACATCGTCTCCCCAAGTATGATCCTGCTACGG 1178
Query 1138 GGCTATTAACAGGAACAAAAGATGGGACACTCGTGAACGTCTACCTGAGGATTTTTGGTA 1197
| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1179 GACTGTTAACAGGAACAAAAGATGGGACACTCGTGAACGTCTACTTGAGGATTTTTGGTA 1238
Query 1198 GGAAATCAGAAAAGTCTCTTTGTATCCATCTTCTTGTTTTCCAGGCTCTAGCTTGCGCCT 1257
||||| ||||||||||||| ||||| ||||||||||||||||||||||| |||||||| |
Sbjct 1239 GGAAAACAGAAAAGTCTCTATGTATTCATCTTCTTGTTTTCCAGGCTCTTGCTTGCGCAT 1298
Query 1258 TTTGTTTCATGCTTAGGCATTTTCTAGCTGGTTGGTACAAATAAATCTCTGCAACATGAA 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 TTTGTTTCATGCTTAGGCATTTTCTAGCTGGTTGGTACAAATAAATCTCTGCAACATGAA 1358
Query 1318 GAAA 1321
||||
Sbjct 1359 GAAA 1362
> AT2G41490.1 | Symbols: GPT | UDP-glcnac-adolichol phosphate glcnac-1-p-transferase
| chr2:17301695-17304211 FORWARD LENGTH=1544
Length=1544
Score = 1430 bits (774), Expect = 0.0
Identities = 1060/1197 (89%), Gaps = 24/1197 (2%)
Strand=Plus/Plus
Query 116 TTCCGGCGAGG-ATTTCCGTCTCGCGCCGCCCAAATTGGGCGTGATCTTTGTGATCTCTT 174
|||||| |||| |||| |||||||||||||| ||||| || |||||||| |||||||||
Sbjct 178 TTCCGGTGAGGAATTT-CGTCTCGCGCCGCCGAAATTAGGAGTGATCTTCGTGATCTCTA 236
Query 175 CGCTTCTGTGTTCGCTTTATCTTTACCTTCTCTGTTTCCACTACAATGTTGACAATGAGC 234
| ||||| |||||||| ||||| |||||||||||||| |||||||| ||||| |||||||
Sbjct 237 CTCTTCTCTGTTCGCTCTATCTATACCTTCTCTGTTTTCACTACAAGGTTGATAATGAGC 296
Query 235 TCAAGCG-TCCGATCCTCATTAACGCTGGGCTTAGTTTGGTTGGGTTCTTT-GTCACACT 292
||||||| | |||| || |||||||| |||||||| ||||||||||| ||| ||||| ||
Sbjct 297 TCAAGCGAT-CGATTCTAATTAACGCGGGGCTTAGCTTGGTTGGGTT-TTTCGTCACTCT 354
Query 293 CAAATTGATTCCTG-TAGCTGCTAGATACGTTCTGAGGCGTAACATGTTTGGTTTTGATA 351
|||| ||||||||| || |||| |||||||||||||| ||||||||||||||||||||||
Sbjct 355 CAAAATGATTCCTGTTA-CTGCCAGATACGTTCTGAGACGTAACATGTTTGGTTTTGATA 413
Query 352 TTAACAAAAGAGGCACTCCTCAAGGAGA-AGTTAAAGTGCCTGAGTCATTGGGAATTGTT 410
| |||||||||||||| ||||||||||| | |||||||||| ||||||||||| ||||||
Sbjct 414 TCAACAAAAGAGGCACGCCTCAAGGAGATA-TTAAAGTGCCAGAGTCATTGGGTATTGTT 472
Query 411 GTCGGTATTGTCTTCTTGATAGTGGCGATAGTGTTTCAGT-TCTTTAATTTCACTGAAGA 469
|| ||||||||||| ||||| ||||||||| | ||||||| | ||||| |||||||||||
Sbjct 473 GTTGGTATTGTCTTTTTGATCGTGGCGATAATATTTCAGTAT-TTTAACTTCACTGAAGA 531
Query 470 TTC-GGTGTGGCTTGTGGAGTATAATGCAGCACTGGCGTCTATTTGCTTCATGATTTTGC 528
||| | |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 532 TTCTAAT-TGGCTTGTGGAGTATAATGCAGCACTAGCATCTATTTGCTTCATGATTTTGC 590
Query 529 TTGGATTTGTAGATGACGTCCTTGATGTGCCTTGGAGAGTGAAA-CTTCTCTTGCCATCT 587
|||||||||||||||| ||||||||||||||||||||||| ||| ||| || ||||||||
Sbjct 591 TTGGATTTGTAGATGATGTCCTTGATGTGCCTTGGAGAGT-AAAGCTTGTCCTGCCATCT 649
Query 588 TTTGCAACCCTTCCA-TTGTTGATGGCTTATGCTGGACATACAACTATCGTCATACCGAA 646
||||| ||||||||| || ||||||||||||||||| ||||||||||| || ||||| ||
Sbjct 650 TTTGCTACCCTTCCACTT-TTGATGGCTTATGCTGGTCATACAACTATTGTTATACCAAA 708
Query 647 ACCTCTTGTTTCTTATATTGGCTTGGAAGTGTTTGATCTAGGACGGATATATAAGTTATA 706
|||||||||| |||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 709 ACCTCTTGTTGCTTATATTGGCTTGGAAGTGCTTAATCTAGGAAGGATATATAAGTTATA 768
Query 707 TATGGCGCTACTAGCTGTCTTTTGCACAAATTCTATAAACATTCATGCTGGTTTGAATGG 766
||||| |||||| ||||||||||| ||||| ||||| ||||| || |||||| |||||||
Sbjct 769 TATGGGGCTACTTGCTGTCTTTTGTACAAACTCTATTAACATCCACGCTGGTCTGAATGG 828
Query 767 CCTAGAAATCGGTCAAACCGTAGTTATTGCAGCTGCTATTCTGATACACAACATTATGCA 826
||| |||||||||||||| || |||||||| |||||||| |||||||||||| |||||||
Sbjct 829 CCTTGAAATCGGTCAAACAGTTGTTATTGCCGCTGCTATCCTGATACACAACGTTATGCA 888
Query 827 AATCGGAGTATCTGTTGATACTGAGTATCATCAAGCTCATGCCTTCTCAATCTATCTTAC 886
|||||||| |||||||||| | |||||||| ||||||||||||||||| || | ||||||
Sbjct 889 AATCGGAGCATCTGTTGATCCCGAGTATCACCAAGCTCATGCCTTCTCGATATTTCTTAC 948
Query 887 TCAGCCATTGATGGCAACATCCTTGGCAATGCTTGCCTACAATTGGTACCCTTCTGCAGT 946
||| || ||||||| |||||||||||||||||||| ||||||||||| |||||| ||||
Sbjct 949 TCAACCGCTGATGGCCACATCCTTGGCAATGCTTGCTTACAATTGGTATCCTTCTTCAGT 1008
Query 947 TTTTGTTGGAGACACTTACACAGTCTTTGCCGGAATGACTATGGCAGTTGTTGGCATTCT 1006
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1009 TTTTGTTGGAGACACTTACACAGTCTTCGCCGGAATGACTATGGCAGTTGTTGGTATTCT 1068
Query 1007 CGGTCACTTCAGTGAAACCCTCTTAATCTTTTTTCTTCCTCAAGTGT-TGAACTTTCTTT 1065
||||||||||||||||||||| | ||||| |||||||||||||| | |||||||||| |
Sbjct 1069 GGGTCACTTCAGTGAAACCCTCCTCATCTTCTTTCTTCCTCAAGT-TCTGAACTTTCTAT 1127
Query 1066 TGTCGCTTCCGCAGCTTGCTGGCATTGTGAAATGTCCACGACATCGTCTCCCCAAGTT-T 1124
| |||||||| ||||||||||| |||||||||||||| || ||||||||||| ||| | |
Sbjct 1128 TATCGCTTCCTCAGCTTGCTGGGATTGTGAAATGTCCGCGCCATCGTCTCCC-AAGGTAT 1186
Query 1125 GATCCTGCTACGGGGCTATTAACAGGAACAAAAGATGGGACACTCGTGAACGTCTACCTG 1184
||||||||||| || || | || || |||||||||||||||||||| || || ||| ||
Sbjct 1187 GATCCTGCTACCGGATTACTGACCGGCACAAAAGATGGGACACTCGTCAATGTTTACTTG 1246
Query 1185 AGGATT-TTTGGTAGGAAATCAGAAAAGTCTCTTTGTATCCATCTTCTTGTTTTCCAGGC 1243
||| || |||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1247 AGG-TTGTTTGGTCCTAAATCAGAAAAGTCTCTTTGCATCCATCTTCTCGTTTTCCAGGC 1305
Query 1244 TCTAGCTTGCGCCTTTTGTTTCATGCTTAGGCATTTTCTAGCTGGTTGGTACAAATA 1300
|||||| |||||||| || ||||| ||| | || ||||| ||||||||||| |||||
Sbjct 1306 TCTAGCCTGCGCCTTCTGCTTCATACTTCGACACTTTCTTGCTGGTTGGTATAAATA 1362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65009705775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5