BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938706

Length=353
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G57310.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   510    3e-144


> AT3G57310.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr3:21208200-21208511 
REVERSE LENGTH=312
Length=312

 Score =  510 bits (276),  Expect = 3e-144
 Identities = 300/312 (96%), Gaps = 0/312 (0%)
 Strand=Plus/Plus

Query  21   ATGAAGTTCACGAAATTATTGTTCATGGCATTTGTTATGATCGTCATGACATCTCTGGCT  80
            |||||||||||||||||||| ||| |||||| |||||||||||||||| || ||||||||
Sbjct  1    ATGAAGTTCACGAAATTATTATTCGTGGCATCTGTTATGATCGTCATGTCACCTCTGGCT  60

Query  81   CCAACCAGAGCATCTGTGGTTGGAGGTTGGGGTATAGAGGAGAAAGCGGCATGCATCGTG  140
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CCAACCAGAGCAACTGTGGTTGGAGGTTGGGGTATAGAGGAGAAAGCGGCATGCATCGTG  120

Query  141  ACAGACCTCATGTCATGCCTACCGGCGATACTCAAAGGAAGTCAGCCACCGGCATATTGT  200
            ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  121  ACAAACCTCATGTCATGCCTGCCGGCGATACTCAAAGGAAGTCAGCCACCGGCATATTGT  180

Query  201  TGCGAGATGCTGAAAGAGCAGCAGTCTTGTCTTTGTGGTTACATAAAGACTCCAGCGTTT  260
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct  181  TGCGAGATGCTGAAAGAGCAGCAGTCTTGTCTTTGTGGTTACATAAAGTCTCCAACGTTT  240

Query  261  GGTCACTATGTCATCCCTAAAAATGCTCACAAACTTCTAGCGGCTTGTGGTATTCCTTAC  320
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct  241  GGTCACTATGTCATCCCTCAAAATGCTCACAAACTTCTAGCGGCTTGTGGTATTCTTTAC  300

Query  321  CCTAAATGTTGA  332
            ||||||||||||
Sbjct  301  CCTAAATGTTGA  312



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16538089421


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5