BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938710
Length=2649
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57350.1 | Symbols: | Nucleoporin interacting component (Nu... 2390 0.0
AT2G41620.1 | Symbols: | Nucleoporin interacting component (Nu... 1402 0.0
> AT3G57350.1 | Symbols: | Nucleoporin interacting component (Nup93/Nic96-like)
family protein | chr3:21220387-21225305 REVERSE
LENGTH=2802
Length=2802
Score = 2390 bits (1294), Expect = 0.0
Identities = 1468/1550 (95%), Gaps = 20/1550 (1%)
Strand=Plus/Plus
Query 1098 AGGAAGCTAGAGAAATTGCCCAGTCATCTCGGTCATCTCAACAACAGTTTGCTCCTCTGC 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 AGGAAGCTAGAGAAATTGCCCAGTCATCTCGGTCATCTCAACAACAGTTTGCTCCTCTGC 1129
Query 1158 TTACAGAGTGGATTACCACAGGTGGTACTGTGGCTGCACATACCGCTGCTATTGCTTCTG 1217
|||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1130 TTACAGAGTGGATTACAACAGGTGGTACTGTGGCTGCACAAACCGCTGCTACTGCTTCTG 1189
Query 1218 AGGAATGTGAGAAATTGTTAAGGATGGGTGATCGGTTTGGCCAAACAACATATGACAAGA 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 AGGAATGTGAGAAATTGTTAAGGATGGGTGATCGGTTTGGCCAAACAACATATGACAAGA 1249
Query 1278 AGAAGCTCCTACTCTACACTATCATATCTGGTTCCCGAAGGCAAATTGATCGCATCTTGA 1337
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1250 AGAAGCTTCTACTCTACACTATCATATCTGGTTCCCGAAGACAAATTGATCGCATCATGA 1309
Query 1338 GGGATTTTTCTACGCTCTTTAACACAATAGAAGATTTTCTCTGGTTCAAACTATCATGTG 1397
| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 GAGATTTTTCGACCCTCTTTAACACAATAGAAGATTTTCTCTGGTTCAAACTATCATGTG 1369
Query 1398 TACGTGACGTAGCTGGTGGATCTTCATCTGTGATCTTGAATGATGGGCTAGTGCCTTACA 1457
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||
Sbjct 1370 TACGTGACGTAGCTGGTGGATCTTCATCTATGATCGTGAATGATGGGCTAGTGCCATACA 1429
Query 1458 GTTTGGATGATCTTCAGGTTTATCTTAATAAATTTGAGCCATCTTACTACACTAAGAATG 1517
||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1430 GTTTGGATGATCTCCAGGCCTATCTTAATAAGTTTGAGCCATCTTACTACACTAAGAATG 1489
Query 1518 GCAAAGACCCTCTGGTATACCCATATGTTTTGCTTCTTAGCATCCAGTTACTACCGGCGA 1577
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1490 GGAAAGACCCTCTGGTATACCCATATGTTTTGCTTCTTAGCATTCAGTTACTACCGGCGA 1549
Query 1578 TCATGCACATGTCCAACGAAGCTGGAGATGAAGGGTATAACATTGATGCTGTCCATGTAG 1637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 TCATGCACATGTCCAACGAAGCTGGAGATGAAGGGTATAACATTGATGCTGTCCATGTAG 1609
Query 1638 CTATTTCGCTAGTGGACCATTCCATTCTATCTGAAGGATCTGGGACTGGGCACAAACTAA 1697
|||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1610 CTATATCGCTAGTGGACCATTCCATTCTCTCTGAAGGATCTGGGACTGGGCGCAAACTAA 1669
Query 1698 GTGTGATGGATGCTAATGCCGAGGCATCTAGCATGATTAGGCAATATGGGTCAATGTATT 1757
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1670 GTGTGATGGATGCTAATGCCGAGGCATCTAGCATGATTAGGCAATATGGGTCGATGTATT 1729
Query 1758 TGCATCATGGTGATCTGCAAATGACGCTGGAATACTATGCACAAGCTGCTATTGCAGTAG 1817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1730 TGCATCATGGTGATCTGCAAATGACGCTGGAATACTATGCACAAGCTGCTATTGCAGTAG 1789
Query 1818 GTGGGGGGCAACAAGCTTGGTCTGGAAGAAGTAATGTTGATCAACAAAGGCAAAGGAACT 1877
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1790 GTGGGGGTCAACAGGCTTGGTCTGGAAGAAGTAATGTTGATCAACAAAGGCAAAGGAACT 1849
Query 1878 TGATGCTAAAGCAACTACTGACTGAGATTTTGTTACAAGAGAATGGTGTTTACTTTCTAC 1937
||||||| ||||||||||||||||||||||||| ||||||| ||||| || ||||||| |
Sbjct 1850 TGATGCTGAAGCAACTACTGACTGAGATTTTGTCACAAGAGGATGGTATTCACTTTCTGC 1909
Query 1938 TTGGTGCTAGAGGTTCCGGTGAAGAAGGTGAGCTTGGAAGATTTCTGCCTGATATAAAAT 1997
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1910 TTGGTGCTAGAGGTTCCGGTGAAGAAGGCGAGCTTGGAAGATTTCTGCCTGATATAAAAT 1969
Query 1998 TGAGGCAGCAGTTCTTGATCGAAGCTGCACATCAATGTCAAGAAGCTGGATTATATGACC 2057
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1970 TGAGGCAGCAGTTCTTGATCGAAGCTGCGCATCAATTTCAAGAAGCTGGATTATATGACA 2029
Query 2058 AATCGATAGAACTACAAAAGAGAGTTGGTGCGTATTCGTCTGCCTTGGAAACGATAAACA 2117
|||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2030 AATCAATAGAACTACAGAAGAGAGTTGGTGCGTTTTCGTCTGCCTTGGAAACGATAAACA 2089
Query 2118 AATGTCTATCTGAAGCCATTTGCTCCCTCGTCCGTGGAAGGCCAGATGGTGAAACCCAAA 2177
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||
Sbjct 2090 AATGTCTATCTGAAGCCATTTGCTCCCTTGTCCGTGGAAGGCCAGATGGTGAAAGCCGAA 2149
Query 2178 CAGAGGGGCTTGTTCTCTCAGGCAACGATATTCTCAATGCATACAAATATCACCCTGATT 2237
||||||||||||||||||| ||||| || ||||||||| | ||||||||||||||||||
Sbjct 2150 CAGAGGGGCTTGTTCTCTCGGGCAATGACATTCTCAATTCTTACAAATATCACCCTGAT- 2208
Query 2238 GTCACATTCTTGTATATTACAGTGGCCAGGAAAGAGC-TCGGGTTATGGAACAAGAAACA 2296
|||| | | | |||||||||| | || ||||||||||||||||||
Sbjct 2209 GTCAG-T----G-------C-----CCAGGAAAGA-CATCTTGTTATGGAACAAGAAACA 2250
Query 2297 ATACTAAGAGAGCTTGAGGCAATACTATCGATCCACAAGTTAGCCAGACTAAACAAACAT 2356
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 2251 ATACTAAGAGAGCTTGAGGCAATATTATCGATCCACAAGTTGGCCAGACTAAACAAACAT 2310
Query 2357 CTAGATGCCATAAGAGAAGTCGCGAAACTTCCGTTCCTTCATCTCGATCCAAGACTACCC 2416
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 2311 CTAGATGCCATAAGAGAAGTCGCGAAACTTCCATTCCTTCATCTCGATCCAAGACAACCA 2370
Query 2417 GACACCACCTCAGATGAGTTCCAGAGAGCATCCTCTTACTTTCAGACTTGTGTCCCTGAT 2476
||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 2371 GACACCACCTCGGATGAGTTCCAGAAAGCATCTTCTTACTTTCAGACTTGTGTCCCTGAT 2430
Query 2477 TTACTTAAGGTTACTCTGACCTGTTTGGATAACGTAGCTGACACTGATGGATCGATCAGG 2536
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2431 TTACTTAAGGTTGCTCTGACCTGTTTGGATAACGTAGCTGACACTGATGGATCAATCAGG 2490
Query 2537 GGCATGAGATCTAAGATTGCTGGGTTTCTTGCAAGCAACACACAGCGGAACTGGCCTCGA 2596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2491 GGCATGAGATCTAAGATTGCTGGGTTTCTTGCAAGCAACACACAGCGGAACTGGCCTCGA 2550
Query 2597 GATTTGTACGAGAAGGTTGCTCGAAGCTTTTGAATCTAAGAAACTCAAAT 2646
||||||||||||||| | ||||||||||||||||||||||||| || |||
Sbjct 2551 GATTTGTACGAGAAGATAGCTCGAAGCTTTTGAATCTAAGAAATTCGAAT 2600
Score = 1520 bits (823), Expect = 0.0
Identities = 898/935 (96%), Gaps = 2/935 (0%)
Strand=Plus/Plus
Query 166 GAATTTGGATCAATTGGAAGCATTGTCGAGGAAACTCAAGGCTAAAACCCTAAGAAACGA 225
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 105 GAATTTGGATCAATTGGAAGCATTGTCGAGGAAACTCAAAGCTAAAACCCTAAGAAACGA 164
Query 226 AGCTCCTTCACAGTCTATTGCTGCCACAAGACTCCTTGCACGGGAGGGAATCAATGCAGA 285
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 165 AGCTCCTTCACAGTCTATTGCTGCCACTAGACTACTTGCACGGGAGGGAATCAATGCAGA 224
Query 286 TCAATTAGCTCGTGATCTTAAGTCATTTGAGTTGAAGACCACATTTGAGGATGTATTCCC 345
||||||| ||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 225 TCAATTATCTCGTGATCTTAAGTCATTTGAGTTGAAGACGACTTTTGAAGATGTATTCCC 284
Query 346 TGCCGAGACAACAAATGTTGAAGAATACCTGCAACAGGTTCATGAAATGGCTATGGTATC 405
||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 285 TGCGGAGACAACAAGTGTTGAAGAATACCTGCAACAGGTTCATGAAATGGCAATGGTATC 344
Query 406 GGCTATACAGGAGGCTCAAAAAGATAATGTTCGAAGCTTTAACAACTACATGTTGAAAGT 465
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 345 GGCTATACAGGAGGCCCAGAAAGATAATGTTCGAAGCTTTAACAACTACATGTTGAAAGT 404
Query 466 GTTGGAGGAGGACTGTAGGAAAGAAAAACGTGACTTTCTTCATAGCCTTAGCAAAATTTC 525
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||
Sbjct 405 GTTGGAGGAGGACTGTATAAAAGAAAAACGTGACTTTCTTCACAGCCTTAGCAAAACTTC 464
Query 526 AATGTTACCTAAGAACAAGATGATCGATTCAAGCAGAGGCTCTCATGCTGATTCACTAGT 585
|||||||||||||| |||||||||| ||||||| |||||||||||||||| |||||||||
Sbjct 465 AATGTTACCTAAGACCAAGATGATCAATTCAAGTAGAGGCTCTCATGCTGGTTCACTAGT 524
Query 586 GCCTTTGAGTCCTCAAGTATCTTCAAAACCTGGAACGGAGCTCGTGTCTATGACTAACAA 645
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 525 GCCTTTGAGTCCCCAAGTATCTTCAAAACCTGGAACGGAACTCGTGTCTATGACTAACAA 584
Query 646 ACCCATTCATGAGAAAAAGGCTTATGTCTATGCCGAGGTTGTGAAGAAACTAAACTCTGC 705
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 585 ACCCATTCATGAGAAAAAGGCATATGTCTATGCCGAGGTTGTGAAAAAACTAAACTCTGC 644
Query 706 AAGAGAACGAGGCTTGCCATTTAAACCTGCAACATCGTTCAATGGTGCATATGAAAGTCT 765
|||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||
Sbjct 645 AAGAGAACGAGGCTTGCCATTTAAACTTGCAACATTGTTCAACGGTGCATATGAAAGTCT 704
Query 766 AGGAATTGATTTGACTCGTGGAAAATCAGTCAACATGCAGAAAA-TATGGCAACTTATTC 824
|| |||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||
Sbjct 705 AGAAATTGATTTGACTCGTGGAAAATCAGTCAACATGCA-AAAATTATGGCAGCTTATTC 763
Query 825 AGGCAATGACGGGTGAAGATTCAGCAGTACAACATGGTGTTTCCAAGAGGATGGCCCTCG 884
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 764 AGGGAATGACGGGTGAAGAGTCAGCAGTACAACATGGTGTTTCCAAGAGGATGGCCCTCG 823
Query 885 TGATAGGTGCAAGACGCCACTTGGAATGTGGGCATGAGAAACATATAATGGATACAATTC 944
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 824 TGATAGGTGCAAGACGCCACTTGGAATGTGGGCATGGGAAACATATAATGGATACAATTC 883
Query 945 AAAGTCATCCTACACAAGCTGCTCTTGGTGGATCAGTTGGAAATTTGCAAAGAATTCGTG 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 AAAGTCATCCTACACAAGCTGCTCTTGGTGGATCAGTTGGAAATTTGCAAAGAATTCGTG 943
Query 1005 CTTTTCTTCGGATTCGTCTGAGAGATTATGGGATTTTGGATTTTGATTCAGGTGATGCTC 1064
||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||
Sbjct 944 CTTTTCTTCGGATTCGTCTGAGAGATTATGGGAGTTTGGACTTTGATTCAGTTGATGCTC 1003
Query 1065 GTAGGCAGCCTCCAGTTGATACTACTTGGCAGCAG 1099
|||||||||||||||||||||||||||||||||||
Sbjct 1004 GTAGGCAGCCTCCAGTTGATACTACTTGGCAGCAG 1038
Score = 161 bits (87), Expect = 3e-38
Identities = 97/102 (95%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 23 ATGGCGAACGACCAGGAGATGAGTGGATGGACTGATCTTCTCCATTCTTCTACTAAGCTC 82
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGCGAACGACCAGGAGATGAGTGGATGGACTGATCTTCTCCATTCTTCGACTAAGCTT 60
Query 83 CTTGAGCAAGCGACTCCTTCGTCTCAGTTTCCTCCTCTTCAG 124
|| ||||||||| ||||||| |||||||||||||||||||||
Sbjct 61 CTGGAGCAAGCGGCTCCTTCTTCTCAGTTTCCTCCTCTTCAG 102
> AT2G41620.1 | Symbols: | Nucleoporin interacting component (Nup93/Nic96-like)
family protein | chr2:17347304-17355084 REVERSE
LENGTH=3859
Length=3859
Score = 1402 bits (759), Expect = 0.0
Identities = 1292/1546 (84%), Gaps = 49/1546 (3%)
Strand=Plus/Plus
Query 1098 AGGAAGCTAGAGAAATTGCCCAGTCATCTCGGTCATCTCAACAACAGTTTGCTCCTCTGC 1157
|||| ||||| |||||||| | |||| | ||||||||||| | | | ||||| || ||||
Sbjct 1163 AGGAGGCTAGGGAAATTGCTCGGTCAACACGGTCATCTCAGC-A-A-TTTGCACCACTGC 1219
Query 1158 TTACAGAGTGGATTACCACAGGTGGTACT-GTGGCTGCACA-TACCGCTGCTATTGCTTC 1215
||||||||||||||||||||| ||||| | ||||||||| | | | || |||||||| ||
Sbjct 1220 TTACAGAGTGGATTACCACAGATGGTA-TGGTGGCTGCAGAGT-CTGCAGCTATTGCATC 1277
Query 1216 TGAGGAATGTGAGAAATTGTTAAGGATGGGTGATCGGTTTGGCCAAACAACATATGACAA 1275
|| |||||||||||| || |||||||||| |||||||| || | |||| | ||||||||
Sbjct 1278 AGAAGAATGTGAGAAAATGCTAAGGATGGGCGATCGGTTGGGTCGAACAGCTTATGACAA 1337
Query 1276 GAAGAAGCTCCTACTCTACACTATCATATCTGGTTCCCGAAGGCAAATTGATCGCAT-CT 1334
||| || |||||||||||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct 1338 GAAAAAACTCCTACTCTACACTATCATTTCTGGTTCCCGTAGGCAAATTGAGCGCATAC- 1396
Query 1335 TGAGGGATTTTTCTACGCTCTTTAACACAATAGAAGATTTTC-TCTGGTTCAAACTATCA 1393
|||||||| | ||||| |||||||||||||| ||||| |||| | ||||||||| | |||
Sbjct 1397 TGAGGGATCTATCTACACTCTTTAACACAATTGAAGA-TTTCTTATGGTTCAAATTGTCA 1455
Query 1394 TGTGTACGTGACGT-AGCTGGTGGATCTTCATCTGTGATCTTGAATGATGGGCTAGTGCC 1452
|| || | ||||| | |||||||||| ||||||||| || |||||||||| || | |||
Sbjct 1456 TGCATAAGAGACGTCA-CTGGTGGATCCTCATCTGTGGTCCTGAATGATGGCCTTGCGCC 1514
Query 1453 TTACAGTTTGGATGATCTTCAGGTTTATCTTAATAAATTTGAGCCATCTTACTACACTAA 1512
|||||||||||||||||||||| |||||| |||||||||||||| || |||||||| ||
Sbjct 1515 ATACAGTTTGGATGATCTTCAGGCTTATCTCAATAAATTTGAGCCTTCATACTACACAAA 1574
Query 1513 GAATGGCAAAGA-CCCTCTGGTATACCCATATGTTTTGCTTCTTAGCATCCAGTTACTAC 1571
|||||| ||||| |||| ||||||| ||||||||||||||||| || | ||||| ||||
Sbjct 1575 GAATGGAAAAGACCCCT-TGGTATATCCATATGTTTTGCTTCTCAGTGTTCAGTTGCTAC 1633
Query 1572 CGGCGATCATGCACATGTCCAACGAAGCTGGAGATGAAGGGTATAACATTGATGCTGTCC 1631
|||| ||||||||| | ||||| ||||| ||||| | ||||||||| ||||||||||| |
Sbjct 1634 CGGCCATCATGCACTTATCCAAAGAAGCAGGAGACGGAGGGTATAATATTGATGCTGTTC 1693
Query 1632 ATGTAGCTATTTCGCTAGTGGACCATTCCATTCTATCTGAAGGATCTGGGACTGGGCACA 1691
|| |||||||||| | ||||| |||||| || |||||||||| ||||||||||| ||||
Sbjct 1694 ATATAGCTATTTCTTTGGTGGATCATTCCGTTTTATCTGAAGGCTCTGGGACTGGCCACA 1753
Query 1692 AACTAAGTGTGATGGATGCTAATGCCGAGGCATCTAGCATGATTAGGCAATATGGGTCAA 1751
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1754 AACTAAGTGTGATGGATTCTAATGCTGAGGCATCTAGCATGATTAGGCAATATGGGTCAA 1813
Query 1752 TGTATTTGCATCATGGTGATCTGCAAATGACGCTGGAATACTATGCACAAGCTGCTATTG 1811
||| ||||||||| || ||||| ||||||||| | || || ||||||||||||||| |
Sbjct 1814 TGTTTTTGCATCACGGAGATCTCCAAATGACGGTAGAGTATTATGCACAAGCTGCTGCTA 1873
Query 1812 CAGTAGGTGGGGGGCAACAAGCTTGGTCTGGAAGAAGTAATGTTGATCAACAAAGGCAAA 1871
| ||||||||||| ||| |||||||||||||||||||||||| |||||||||||||| |
Sbjct 1874 CTGTAGGTGGGGGACAATTAGCTTGGTCTGGAAGAAGTAATGTGGATCAACAAAGGCAGA 1933
Query 1872 GGAACTTGATGCTAAAGCAACTACTGACTGAGATTTTG-TTACAAGAGAA-TGGTGTTTA 1929
| ||| | ||||| ||||| ||||||||||||||| || || | ||| || ||| ||||
Sbjct 1934 GAAACCTAATGCTGAAGCAGCTACTGACTGAGATTCTGCTT-CGAGA-AAGAGGTATTTA 1991
Query 1930 CTTTCTACTTGGTGCTAGAGGTTCCGGTGAAGAAGGTGAGCTTGGAAGATTTCTGCCTGA 1989
|||| | ||||| || |||||||| |||||||||||| |||||||||||||| | |||||
Sbjct 1992 CTTTTTGCTTGGAGCAAGAGGTTCTGGTGAAGAAGGTCAGCTTGGAAGATTTTTCCCTGA 2051
Query 1990 -TATAAAATTGAGGCAGCAGTTCTTGATCGAAGCTGCACATCAATGTCAAGAAGCTGGAT 2048
| | | |||||| || ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2052 TTCT-AGATTGAGACAACAGTTCTTGGTCGAAGCTGCACATCAATGTCAAGAAGCTGGAT 2110
Query 2049 TATATGACCAATCGATAGAACTACAAAAGAGAGTTGGTGCGTATTC-GTCTGCCTTGGAA 2107
|||||||| |||| ||||| |||| ||||| || ||||| | ||| | ||||||||||
Sbjct 2111 TATATGACAAATCCATAGAGTTACAGAAGAGGGTGGGTGCATTTTCCG-CTGCCTTGGAG 2169
Query 2108 ACGATAAACAAATGTCTATCTGAAGCCATTTGCTCCCTCGTCCGTGGAAGGCCAGATGGT 2167
|| |||||||| |||||||| |||||||| || || || | |||||||||| ||||||
Sbjct 2170 ACTATAAACAAGTGTCTATCCGAAGCCATCTGTTCTCTTGCCCGTGGAAGGTTGGATGGT 2229
Query 2168 GAAACCCA-AACAG-AGGGGCTTGTTCTCTCAGGCAACGATATTCTCAATG-CATACAAA 2224
|||| | |||| |||| ||| ||||| |||| ||||||||||| | | | ||||||
Sbjct 2230 GAAAGT-AGAACATCAGGG-CTTATTCTCGCAGGGAACGATATTCTTGA-GACTTACAAA 2286
Query 2225 TATCACCCTGATTGTCACATTCTTGTATATTACAGTGGCCAGGAAAGAGCTCGGGTTATG 2284
||| ||||||| | || || | | | ||||||||||| || || |||
Sbjct 2287 TATTACCCTGA-----A-------GT-TAGT-C--T--CCAGGAAAGAGAGCGAGTGATG 2328
Query 2285 GAACAAGAAACAATACTAAGAGAGCTTGAGGCAATACTATCGATCCACAAGTTAGCCAGA 2344
||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 2329 GAACAAGAAACCATACTAAGAGAGCTTGAGGCAATACTATCGATCCACAAGTTGGGTAGA 2388
Query 2345 CTAAACAAACATCTAGATGCCATAAGAGAAGTCGCGAAACTTCCGTTCCTTCATCTCGAT 2404
|| ||| ||||| ||||| | |||||| | || |||||||| || |||||||| |||
Sbjct 2389 TTAGGCAATCATCTGGATGCTTTGAGAGAAATTGCAAAACTTCCATTTCTTCATCTTGAT 2448
Query 2405 CCAAGACTACCCGACACCACCTCAGATGAGTTCCAGAGAGCATCCTC-TTACTTTCAGAC 2463
|||||| | ||||| | ||| | |||| ||||||||| ||||| || |||||| |||||
Sbjct 2449 CCAAGAATGCCCGATGCAACCGCTGATGTGTTCCAGAGCGCATC-TCCTTACTTCCAGAC 2507
Query 2464 TTGTGTCCCTGATTTACTTAAGGTTACTCTGACCTGTTTGGATAACGTAGCTGACACTGA 2523
||||||||| || | || || ||| |||| || ||| |||| || ||| ||||||||||
Sbjct 2508 TTGTGTCCCGGACCTGCTCAAAGTTGCTCTAACGTGTCTGGACAATGTACCTGACACTGA 2567
Query 2524 TGGATCGATCAGGGGCATGAGATCTAAGATTGCTGGGTTTCTTGCAAGCAACACACAGCG 2583
||| |||||| | | ||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 2568 TGGGTCGATCCGTGCCATGAGATCCAAGATTGCTGGGTTTCTTGCAAGCAACACGCACCG 2627
Query 2584 GAACTGGCCTCGAGATTTGTACGAGAAGGTTGCTCGAAGCTTTTGA 2629
|||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 2628 GAACTGGCCTCGTGACTTGTACGAGAAGGTGGCTCGAAGCTTTTGA 2673
Score = 981 bits (531), Expect = 0.0
Identities = 812/947 (86%), Gaps = 22/947 (2%)
Strand=Plus/Plus
Query 167 AATTTGGATCAATTGGAAGCATTGTCGAGGAAACTCAAGGCTAAAACCCTAAGAAACGAA 226
||||| ||||| |||||||| || |||| ||| ||||||||||||||||| || ||||||
Sbjct 193 AATTTAGATCAGTTGGAAGCGTTATCGAAGAAGCTCAAGGCTAAAACCCTGAGGAACGAA 252
Query 227 GCTCCTTCACAGTCTATTGCTGCCACAAGACTCCTTGCACGGGAGGGAATCAATGCAGAT 286
|||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 253 GCTCCTTCTCAGTCTATTGCTGCCACTAGACTACTCGCACGGGAGGGAATCAATGCAGAG 312
Query 287 CAATTAGCTCGTGATCTTAAGTCATTT-GAGTTGAAGACCACATTTGAGGATGTATTCCC 345
||| |||||||||||||||| || ||| ||| | ||||| |||||||||||||| |||||
Sbjct 313 CAACTAGCTCGTGATCTTAAATC-TTTCGAGCTCAAGACAACATTTGAGGATGTGTTCCC 371
Query 346 TGCCGAGACAACAAATGTTGAAGAATACCTGCAACAGGTTCATGAAATGGCTATGGTATC 405
||| ||| | || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 TGCTGAGGCGACGAGCGTTGAAGAATACCTGCAACAGGTTCATGAAATGGCTATGGTATC 431
Query 406 GGCTATACAGGAGGCTCAAAAAGATAATGTTCGAAGCTTTAACAACTACATGTTGAAAGT 465
||||| ||||| || ||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 432 AGCTATTCAGGAAGCCCAAAAGGATAATGTTCGAAGCTTTAATGACTACATGATGAAAGT 491
Query 466 GTTGGAGGAGGACTGTAGGAAAGAAAAACGTGACTTTCTTCATAGCCTTAGCAAAATTTC 525
|||||||||||| || || ||||||||||||||||| ||||| ||||| |||| ||| ||
Sbjct 492 GTTGGAGGAGGATTGGAGAAAAGAAAAACGTGACTTCCTTCAGAGCCTCAGCAGAATATC 551
Query 526 AATGTTACCTAAGAACAAG-ATGATCGATTCAAGCAGAG-GCTCTCATGCTGATTCA-CT 582
|||| ||||||| ||||| ||||| ||| ||||||||| | ||||||||| | || ||
Sbjct 552 AATGCTACCTAA-AACAAATATGATTGATACAAGCAGAGAGG-CTCATGCTGGT-CAACT 608
Query 583 AGTGCC--T---TT-GAGTCCTCAAGTATCTTCAAAACCTGG-AACGGAGCTCGTGTCTA 635
|||||| | || |||||||| |||||| |||| || || || | | |||||| ||
Sbjct 609 AGTGCCGGTGGGTTCGAGTCCTCGAGTATCCTCAACTCCAGGCAAAGAA-CTCGTGGCTC 667
Query 636 TGACTAACAAACCCATTCATGAGAAAAAGGCTTATGTCTATGCCGAGGTTGTGAAGAAAC 695
|| |||||| |||||||||||||||||| || |||||||||| ||||||||||||||||
Sbjct 668 TGGCTAACATACCCATTCATGAGAAAAAAGCATATGTCTATGGGGAGGTTGTGAAGAAAC 727
Query 696 TAAACTCTGCAAGAGAACGAGGCTTGCCATTTAAACCTGCAACATCGTTC-AATGGT-GC 753
| ||| || |||||||||||||| ||||||||| |||||| | | ||| || || ||
Sbjct 728 TTAACACTTCAAGAGAACGAGGCATGCCATTTAGACCTGCTATGT-GTTTTAA-GGACGC 785
Query 754 ATATGAAAGTCTAGGAATTGATTTGACTCGTGGAAAATCAGTCAACATGCAGAAAATATG 813
||||| | ||| || ||| | |||||||||||||||||||||||||||||||||||
Sbjct 786 TTATGATACTCTTGGTGCTGAGGTAACTCGTGGAAAATCAGTCAACATGCAGAAAATATG 845
Query 814 GCAACTTATTCAGGCAATGACGGGTGAAGATTCAGCAGTACAACATGGTGTTTCCAAGAG 873
||| ||| |||||||||| || ||||||||||||||||| | ||| |||||||| |||||
Sbjct 846 GCAGCTTGTTCAGGCAATAACAGGTGAAGATTCAGCAGTTCGACAGGGTGTTTCGAAGAG 905
Query 874 GATGGCCCTCGTGATAGGTGCAAGACGCCACTTGGAATGTGGGCATGAGAAACATATAAT 933
||||||||||| |||||||||||||| || || || ||||||||||||| ||||||
Sbjct 906 GATGGCCCTCGCGATAGGTGCAAGACATCATTTACAACATGGGCATGAGAAATTTATAAT 965
Query 934 GGATACAATTCAAAGTCATCCTACACAAGCTGCTCTTGGTGGATCAGTTGGAAATTTGCA 993
||| |||||||||| ||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 966 GGACACAATTCAAACTCACCCTACACAGGCTGCTCTTGGTGGATCTGTTGGAAATTTGCA 1025
Query 994 AAGAATTCGTGCTTTTCTTCGGATTCGTCTGAGAGATTATGG-GATTTTGGATTTTGATT 1052
||||||||||||||| |||||||||||| ||||||| ||||| | |||| ||||||||||
Sbjct 1026 AAGAATTCGTGCTTTCCTTCGGATTCGTTTGAGAGACTATGGAG-TTTTAGATTTTGATT 1084
Query 1053 CAGGTGATGCTCGTAGGCAGCCTCCAGTTGATACTACTTGGCAGCAG 1099
|| ||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1085 CAACTGATGCTCGTAGGCAGCCTCCTGTTGATACTACTTGGCAACAG 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131537724546
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5