BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg938724 Length=768 Score E Sequences producing significant alignments: (Bits) Value AT3G57440.1 | Symbols: | unknown protein; Has 31 Blast hits to... 1234 0.0 > AT3G57440.1 | Symbols: | unknown protein; Has 31 Blast hits to 31 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:21258680-21260596 FORWARD LENGTH=1125 Length=1125 Score = 1234 bits (668), Expect = 0.0 Identities = 735/768 (96%), Gaps = 2/768 (0%) Strand=Plus/Plus Query 2 TCGGAAGAATAACTCAG-AGATGGCGAAGCATCCTTCTGCGATTGAGAGATCAGTGGCTT 60 ||||||||| ||||||| | ||||||| | ||||||||| |||||||||| | || |||| Sbjct 34 TCGGAAGAAGAACTCAGTA-ATGGCGACGTATCCTTCTGTGATTGAGAGAACCGTTGCTT 92 Query 61 CGTCTCTTCTTCTCCTTTCCTATGGACCTGTGGTCTTCTCACCCACAAGGTCGGAATCTG 120 |||||||||||||||||||||||||||| ||| |||||||||| | |||||||||||||| Sbjct 93 CGTCTCTTCTTCTCCTTTCCTATGGACCAGTGTTCTTCTCACCTAAAAGGTCGGAATCTG 152 Query 121 TAGAGGAATCGAGCTATGTGAGGAAGTGGTGTGACGAAGGTAGCTCGAACCTGAGCTTGA 180 |||||||||||||||||||||||||||||||| ||||||| || |||||| ||||||||| Sbjct 153 TAGAGGAATCGAGCTATGTGAGGAAGTGGTGTCACGAAGGAAGTTCGAACTTGAGCTTGA 212 Query 181 TGTTGGGATCTAGCGGATCGAGATCTTGTGGCTCGGCTTTGTCCAGCGATGGTTCGTTTG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 213 TGTTGGGATCTAGCGGATCGAGATCTTGTGGCTCGGCTTTGTCCAGCGATGGTTCGTTTG 272 Query 241 GGATGAGCGAGGATCGCGGATTCAAAATCAATTATACTGGAGATCCGTTTCATCTCATGA 300 ||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 273 GGATGAGTGAGGATCGCGAATTCAAAATCAATTATACTGGAGATCCGTTTCGTCTCATGA 332 Query 301 ATTTCAAGACAGCGAGAAAACGCCGATCTCAGGTCATTTGGGGATCCTTCAATTTTAAGC 360 ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 333 ATTTCAAGACAGCGAGAAAACGCCGTTCTCAGGTCATTTGGGGATCCTTCAACTTTAAGC 392 Query 361 CAACACATTTGATGATGAATCCTGCGTGTGATGTTCTCTCAACATGCTCTGTTGAATCCA 420 |||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct 393 CAACACATTTGAAGATGAATCCTGTGTGTGATGTTCTCTCAACATGCTCTGTTGATTCCA 452 Query 421 AAGATGAGTCATGCTTGTCAACTGGTTCAAGCGAGGTTTCTAGCGTAGAAAGCAGAATCA 480 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 453 AAGATGAGTCATGTTTGTCAACTGGTTCAAGCGAGGTTTCTAGCGTAGAAAGCAGAATCA 512 Query 481 AAGTCAGGAATCAGAAAAGCAATGAGAAGCTAAGAGGAGTAGGGAAGAAGATGAAAGAAA 540 |||||||||||||||||||||||||||| || ||||||| |||||||| ||||||||||| Sbjct 513 AAGTCAGGAATCAGAAAAGCAATGAGAAACTTAGAGGAGGAGGGAAGACGATGAAAGAAA 572 Query 541 GTAGCAGGTCGAGTTCTATTCGCCGTAGAGCCAAAGACATCTTGGAGTTTCTTTCCTCTG 600 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 573 GTAGCAGGTCAAGTTCTATTCGCCGTAGAGCCAAAGACATCTTGGAGTTTCTTTCCTCTG 632 Query 601 AATCTTCTTCCGAAGTTCATATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAG 660 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 633 AATCTTCTTCAGAAGTTCACATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAG 692 Query 661 CTCTCAGAATGTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTG 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 693 CTCTCAGAATGTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTG 752 Query 721 ATCCCTTTATTTACAAGATTGCATGAAAGATTAAGACATTAATGCTGG 768 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 753 ATCCCTTTATTTACAAGATTGCATGAAAGATTAAGACATTAATGCTGG 800 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37323971221 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5