BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938724
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57440.1 | Symbols: | unknown protein; Has 31 Blast hits to... 1234 0.0
> AT3G57440.1 | Symbols: | unknown protein; Has 31 Blast hits
to 31 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:21258680-21260596 FORWARD
LENGTH=1125
Length=1125
Score = 1234 bits (668), Expect = 0.0
Identities = 735/768 (96%), Gaps = 2/768 (0%)
Strand=Plus/Plus
Query 2 TCGGAAGAATAACTCAG-AGATGGCGAAGCATCCTTCTGCGATTGAGAGATCAGTGGCTT 60
||||||||| ||||||| | ||||||| | ||||||||| |||||||||| | || ||||
Sbjct 34 TCGGAAGAAGAACTCAGTA-ATGGCGACGTATCCTTCTGTGATTGAGAGAACCGTTGCTT 92
Query 61 CGTCTCTTCTTCTCCTTTCCTATGGACCTGTGGTCTTCTCACCCACAAGGTCGGAATCTG 120
|||||||||||||||||||||||||||| ||| |||||||||| | ||||||||||||||
Sbjct 93 CGTCTCTTCTTCTCCTTTCCTATGGACCAGTGTTCTTCTCACCTAAAAGGTCGGAATCTG 152
Query 121 TAGAGGAATCGAGCTATGTGAGGAAGTGGTGTGACGAAGGTAGCTCGAACCTGAGCTTGA 180
|||||||||||||||||||||||||||||||| ||||||| || |||||| |||||||||
Sbjct 153 TAGAGGAATCGAGCTATGTGAGGAAGTGGTGTCACGAAGGAAGTTCGAACTTGAGCTTGA 212
Query 181 TGTTGGGATCTAGCGGATCGAGATCTTGTGGCTCGGCTTTGTCCAGCGATGGTTCGTTTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 TGTTGGGATCTAGCGGATCGAGATCTTGTGGCTCGGCTTTGTCCAGCGATGGTTCGTTTG 272
Query 241 GGATGAGCGAGGATCGCGGATTCAAAATCAATTATACTGGAGATCCGTTTCATCTCATGA 300
||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 273 GGATGAGTGAGGATCGCGAATTCAAAATCAATTATACTGGAGATCCGTTTCGTCTCATGA 332
Query 301 ATTTCAAGACAGCGAGAAAACGCCGATCTCAGGTCATTTGGGGATCCTTCAATTTTAAGC 360
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 333 ATTTCAAGACAGCGAGAAAACGCCGTTCTCAGGTCATTTGGGGATCCTTCAACTTTAAGC 392
Query 361 CAACACATTTGATGATGAATCCTGCGTGTGATGTTCTCTCAACATGCTCTGTTGAATCCA 420
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 393 CAACACATTTGAAGATGAATCCTGTGTGTGATGTTCTCTCAACATGCTCTGTTGATTCCA 452
Query 421 AAGATGAGTCATGCTTGTCAACTGGTTCAAGCGAGGTTTCTAGCGTAGAAAGCAGAATCA 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 AAGATGAGTCATGTTTGTCAACTGGTTCAAGCGAGGTTTCTAGCGTAGAAAGCAGAATCA 512
Query 481 AAGTCAGGAATCAGAAAAGCAATGAGAAGCTAAGAGGAGTAGGGAAGAAGATGAAAGAAA 540
|||||||||||||||||||||||||||| || ||||||| |||||||| |||||||||||
Sbjct 513 AAGTCAGGAATCAGAAAAGCAATGAGAAACTTAGAGGAGGAGGGAAGACGATGAAAGAAA 572
Query 541 GTAGCAGGTCGAGTTCTATTCGCCGTAGAGCCAAAGACATCTTGGAGTTTCTTTCCTCTG 600
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 GTAGCAGGTCAAGTTCTATTCGCCGTAGAGCCAAAGACATCTTGGAGTTTCTTTCCTCTG 632
Query 601 AATCTTCTTCCGAAGTTCATATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAG 660
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 633 AATCTTCTTCAGAAGTTCACATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAG 692
Query 661 CTCTCAGAATGTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 CTCTCAGAATGTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTG 752
Query 721 ATCCCTTTATTTACAAGATTGCATGAAAGATTAAGACATTAATGCTGG 768
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 ATCCCTTTATTTACAAGATTGCATGAAAGATTAAGACATTAATGCTGG 800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37323971221
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5