BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938731
Length=860
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57490.1 | Symbols: | Ribosomal protein S5 family protein |... 1314 0.0
AT2G41840.1 | Symbols: | Ribosomal protein S5 family protein |... 699 0.0
> AT3G57490.1 | Symbols: | Ribosomal protein S5 family protein
| chr3:21279666-21280948 REVERSE LENGTH=1050
Length=1050
Score = 1314 bits (711), Expect = 0.0
Identities = 797/838 (95%), Gaps = 8/838 (1%)
Strand=Plus/Plus
Query 27 GAACGTGGTGGTGATCGCGGCGATTTCGGACGTGGATTCGGCGGTCGCGGCGGTGGAAGA 86
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 80 GAACGTGGTGGAGATCGCGGCGATTTCGGACGTGGATTCGGTGGTCGCGGCGGTGGAAGA 139
Query 87 GGTGGTCCGAGAGGCCGTGGTCGCCGTGCAGGTCGTGCTCCAGAGGAGGAGAAATGGGTG 146
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 GGTGGTCCGAGAGGTCGTGGTCGCCGTGCAGGTCGTGCTCCAGAGGAGGAGAAATGGGTG 199
Query 147 CCAGTGACTAAGCTTGGTCGTCTTGTAAAGGAAGGTAAGATCA-AACAGCTTGAGCAGAT 205
||||||||||||||||||||||| ||||||||||||||||||| || || ||||||||||
Sbjct 200 CCAGTGACTAAGCTTGGTCGTCTCGTAAAGGAAGGTAAGATCACAA-AGATTGAGCAGAT 258
Query 206 CTACCTCCATTCTCTCCCAGTCAAGGAGTACCAGATCATAGATTTACTCGTCGGCCCTTC 265
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 259 CTACCTCCATTCTCTCCCAGTCAAGGAGTACCAGATCATAGATTTACTCGTCGGTCCTTC 318
Query 266 ATTGAAAGACGAAGTGATGAAAATCATGCCGGTTCAAAAACAAACCAGAGCCGGTCAGAG 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 ATTGAAAGACGAAGTGATGAAAATCATGCCGGTTCAAAAACAAACCAGAGCCGGTCAGAG 378
Query 326 AACGAGATTCAAGGCCTTCGTCGTCGTTGGAGATAGTAACGGTCACGTTGGATTAGGAGT 385
||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||
Sbjct 379 AACGAGATTCAAGGCCTTCATCGTCGTCGGAGATAGTAACGGTCACGTCGGATTAGGAGT 438
Query 386 GAAATGCTCAAAGGAAGTTGCGACGGCGATCAGAGGCGCGATTATTCTCGCGAAATTGTC 445
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 439 CAAATGCTCCAAGGAAGTTGCGACGGCGATCAGAGGCGCGATCATTCTCGCGAAATTGTC 498
Query 446 TGTGGTTCCGATTCGAAGAGGTTACTGGGGTAACAAGATCGGAAAACCACATACGGTTCC 505
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 499 TGTGGTTCCGATACGAAGAGGTTATTGGGGTAACAAGATTGGAAAACCACATACGGTTCC 558
Query 506 GTGTAAAGTAACTGGAAAATGTGGATCTGTTACCGTACGTATGGTTCCAGCTCCAAGAGG 565
|||||| ||||| || ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 559 GTGTAAGGTAACCGGGAAATGTGGATCTGTTACTGTACGTATGGTTCCAGCTCCGAGAGG 618
Query 566 TTCTGGTATTGTGGCCGCTAGAGTTCCTAAGAAGGTTCTTCAATTCGCCGGAATTGATGA 625
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 619 TTCTGGTATTGTGGCGGCTAGAGTTCCTAAGAAGGTTCTTCAATTCGCTGGAATTGATGA 678
Query 626 TGTCTTCACTTCTTCTAGAGGATCCACGAAAACACTTGGAAACTTCGTTAAGGCAACATT 685
|||||| |||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 679 TGTCTTTACTTCTTCTAGAGGATCCACCAAAACTCTTGGAAACTTCGTCAAGGCAACATT 738
Query 686 TGATTGTCTTCAAAAGACTTACGGATTCCTTACACCGGAATTCTGGAAAGAGACGAGATT 745
||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 739 TGATTGTCTGCAGAAGACATACGGATTCCTTACACCGGAATTCTGGAAAGAGACGAGATT 798
Query 746 CTCAAAATCACCATACCAAGAGCACACTGATTACTTGCTTACGCCTCCTGGCGTCAAGAT 805
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 799 CTCAAAATCACCATACCAAGAGCACACTGATTTCTTGCTTATACCTCCTGGCGTCAAGAT 858
Query 806 CAGGGAGGTTGT---AGACAAAAGCGTAGTAGAGTAATACCACTTTATCTTGTTACAT 860
||| |||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 859 CAGCGAGGTTGTTGTAGACAAAAGCGTAG-AG--TAATACCACTTTATCTTGTTACAT 913
> AT2G41840.1 | Symbols: | Ribosomal protein S5 family protein
| chr2:17459788-17461539 REVERSE LENGTH=1227
Length=1227
Score = 699 bits (378), Expect = 0.0
Identities = 580/679 (85%), Gaps = 8/679 (1%)
Strand=Plus/Plus
Query 103 GTGGTCGCCGTGCAGGTCGTGCTCCA--GAGGAGGAGAAATGGGTGCCAGTGACTAAGCT 160
||||||| |||| ||| |||| ||| || || ||||||||||| |||||||| |||||
Sbjct 263 GTGGTCGTCGTGGAGGGCGTG--CCAGTGAAGAAGAGAAATGGGTTCCAGTGACCAAGCT 320
Query 161 TGGTCGTCTTGTAAAGGAAGGTAAGATCAAACAGCTTGAGCAGATCTACCTCCATTCTCT 220
||||||||| || || ||| | ||||| ||| | ||||||||||| || ||||| ||
Sbjct 321 TGGTCGTCTCGTGGCGGCTGGTCATATCAAGCAGATAGAGCAGATCTATCTTCATTCACT 380
Query 221 CCCAGTCAAGGAGTACCAGATCATAGATTTACTCGTCGGCCCTTCATTGAAAGACGAAGT 280
||| || ||||||||||||||||| ||| | ||| |||| || ||||||| || || ||
Sbjct 381 CCCGGTTAAGGAGTACCAGATCATTGATATGCTCATCGGTCCAACATTGAAGGATGAGGT 440
Query 281 GATGAAAATCATGCCGGTTCAAAAACAAACCAGAGCCGGTCAGAGAACGAGATTCAAGGC 340
|||||||||||||||||||| ||||||||||| || ||||| || || |||||||||||
Sbjct 441 AATGAAAATCATGCCGGTTCAGAAACAAACCAGGGCTGGTCAAAGGACTAGATTCAAGGC 500
Query 341 CTTCGTCGTCGTTGGAGATAGTAACGGTCACGTTGGATTAGGAGTGAAATGCTCAAAGGA 400
||| || |||||||||||| |||| ||||| ||||| || |||||||||||||| |||||
Sbjct 501 CTTTGTTGTCGTTGGAGATGGTAATGGTCATGTTGGGTTGGGAGTGAAATGCTCTAAGGA 560
Query 401 AGTTGCGACGGCGATCAGAGGCGCGATTATTCTCGCGAAATTGTCTGTGGTTCCGA-TTC 459
|||||| ||||| || ||||| |||||||||||||| || ||||||| ||||| | |
Sbjct 561 AGTTGCTACGGCCATTAGAGGAGCGATTATTCTCGCTAAGCTGTCTGTTGTTCC-AGTGA 619
Query 460 GAAGAGGTTACTGGGGTAACAAGATCGGAAAACCACATACGGTTCCGTGTAAAGTAACTG 519
| ||||||||||||||||||||||| || || |||||||||||||| ||||| || ||||
Sbjct 620 GGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACATACGGTTCCTTGTAAGGTGACTG 679
Query 520 GAAAATGTGGATCTGTTACCGT-ACGTATGGTTCCAGCTCCAAGAGGTTCTGGTATTGTG 578
| || ||||||||||| || || | | |||||||||||||| ||||||||||||||||||
Sbjct 680 GGAAGTGTGGATCTGTGACAGTGA-GGATGGTTCCAGCTCCTAGAGGTTCTGGTATTGTG 738
Query 579 GCCGCTAGAGTTCCTAAGAAGGTTCTTCAATTCGCCGGAATTGATGATGTCTTCACTTCT 638
|| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 739 GCTGCTAGAGTTCCTAAGAAGGTTCTTCAATTCGCTGGAATTGATGATGTTTTCACTTCC 798
Query 639 TCTAGAGGATCCACGAAAACACTTGGAAACTTCGTTAAGGCAACATTTGATTGTCTTCAA 698
|| || |||||||| ||||| |||||||||||||| ||||| ||||| ||||| |||||
Sbjct 799 TCCAGGGGATCCACCAAAACTCTTGGAAACTTCGTCAAGGCTACATTCGATTGCCTTCAG 858
Query 699 AAGACTTACGGATTCCTTACACCGGAATTCTGGAAAGAGACGAGATTCTCAAAATCACCA 758
|||||||||||||||||||| || || |||||||| ||||| |||||||| | |||||||
Sbjct 859 AAGACTTACGGATTCCTTACCCCAGAGTTCTGGAAGGAGACAAGATTCTCTAGATCACCA 918
Query 759 TACCAAGAGCACACTGATT 777
|||||||||||||||||||
Sbjct 919 TACCAAGAGCACACTGATT 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41945512745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5