BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938754
Length=1070
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57710.1 | Symbols: | Protein kinase superfamily protein | ... 1522 0.0
AT3G57700.1 | Symbols: | Protein kinase superfamily protein | ... 1511 0.0
AT3G57770.1 | Symbols: | Protein kinase superfamily protein | ... 558 3e-158
AT3G57765.1 | Symbols: U2.3 | U2.3; snRNA | chr3:21397262-21398... 409 3e-113
> AT3G57710.1 | Symbols: | Protein kinase superfamily protein
| chr3:21384676-21387399 REVERSE LENGTH=2724
Length=2724
Score = 1522 bits (824), Expect = 0.0
Identities = 963/1030 (93%), Gaps = 10/1030 (1%)
Strand=Plus/Minus
Query 16 TTAGAGATGTTGCGTCTGTTCagaaagaagaagaagaagaagcagaagaaagaaaagGAG 75
||||||||||||||||||||| || | |||||||||||||||||||||||| |||||
Sbjct 2489 TTAGAGATGTTGCGTCTGTTC----AG-A-AAGAAGAAGAAGCAGAAGAAAGAAGAGGAG 2436
Query 76 ATCAATTTCCAGAAGAATGGGAGCTTATTGTTGGAAGAACTCATTGCAACTTCAGGAGGT 135
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2435 ATCAATCTCCAGAAGAATGGGAGCTTACTGTTGGAAGAACTCATTGCAACTTCAGGAGGT 2376
Query 136 AAATACAATCCCATCCGTACGTTTTCTTCCGACCAAATCCTTCAAGCCACAAATCACTTT 195
| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2375 ATATACAATCCCATCCGTACGTTTTCTTCCGACCAAATCCTACAAGCTACAAATCACTTT 2316
Query 196 GACTGGAACTACGTAATCTCTGAAGACAGATTCGTGTGGTACAAAGGTATGATTGAAAAC 255
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2315 GACTGGAACTACGTAATCTCTGAAGACAGATTCGTGTGGTACAAAGGCATGATTGAAAAC 2256
Query 256 AGACTCGTACTGATCAAGAAATTCCAAGACTGTTCTGTTTTCGACGCTGACAACTTTTAC 315
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2255 AGACCCGTACTGATCAAGAAATTCCAAGACTGTTCTGTTTTCGACGCTGACAACTTTTAC 2196
Query 316 CGTGACATTGCGGTTTCATCTTTGATGAGTAGCCATAAGAATGTTCTCAAGCTTC-TAGG 374
||||||||||| |||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 2195 CGTGACATTGCTGTTTCATCTTTGATGAGTAGCCATAAGAATGTTCTCAAGC-TCTTGGG 2137
Query 375 GTGTTGTCTAGAGTTTCCTCGTCCTGTTCTCGTGTGTGAGTACCCAGAAAATGGAGCTCT 434
|||||||||||||||||||||||| |||||||||||||| || |||||| ||||||||||
Sbjct 2136 GTGTTGTCTAGAGTTTCCTCGTCCGGTTCTCGTGTGTGAATATCCAGAACATGGAGCTCT 2077
Query 435 AAACTGTATAAGACGTGGAAAAGAAGGCGTCCGGCCATTCCCTTGGAATGTAAGGTTGAG 494
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2076 AAACTGTATAAGATGTGGAAAAGAAGGCGTCCGGTCATTCCCTTGGAATGTAAGGTTGAG 2017
Query 495 AATCGCCAAGGAGATTGCAGATGCTGTAACGTATCTGCATACTGAATTCCCTAGGACTAT 554
|||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||
Sbjct 2016 AATCGCCAAGGAGATTGCAGATGCTGTAGCGTATCTTCATACTGAATTCCCCAGGACTAT 1957
Query 555 AATCCATAGGGATTTAAAGCTTGCAAATATTTTCCTGGACGAGAATTGGTCCGTC-AAGC 613
|||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||
Sbjct 1956 AATCCATAGGGATTTAAAGCTTGCAAATATTTTCCTTGACGAGAATTGGTCCG-CTAAGC 1898
Query 614 TCTCTTCTTTCAGCCTCAGTGTACTGATTCCAGAAGGAGAAACGGGCGTAAATGACATGG 673
|||||||||||||||||||| || || ||||||| || ||||| ||||||||||||||||
Sbjct 1897 TCTCTTCTTTCAGCCTCAGTATAGTGCTTCCAGAGGGTGAAACTGGCGTAAATGACATGG 1838
Query 674 TTTGCAAGACATCGAGCTATATCGAGCCCGGTTACCTCAATACAGGTTTGGTCACTGAGA 733
|||||| |||||| |||||||||||||| | |||| | ||||||||||||||||| ||||
Sbjct 1837 TTTGCAGGACATCAAGCTATATCGAGCCTGATTACTTTAATACAGGTTTGGTCACCGAGA 1778
Query 734 ATGTCGATATCTATAACCTTGGGATCATCATGCTAGTTCTTTTGAGAGAAAAGTCTGAAT 793
||||||| ||||||| |||||||||||||||||| || |||||| || |||||||||||
Sbjct 1777 ATGTCGACATCTATAGTCTTGGGATCATCATGCTAATTATTTTGACAGGAAAGTCTGAAT 1718
Query 794 ACACTTCCGAAGTTGCTGTTTATCTTCCTGCATTGCCTGTCTATGTTGGGAAGTTTCTGG 853
||| ||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1717 ACAATTCAGAAGTCGCTGTTTATCTTCCTGTATTGCCTGTCTATGTTGGGAAGTTTCTGG 1658
Query 854 AGCGAGGTTTGTTGACTGAGCTGATAGACCCGTTGATGTTGGACAGCGCGAGTGACGACA 913
||||||||||||||||||| || |||||||||| ||| ||||||||| ||||||| ||||
Sbjct 1657 AGCGAGGTTTGTTGACTGAACTCATAGACCCGTCGATATTGGACAGCACGAGTGATGACA 1598
Query 914 TTCCCCAGCATTCAAGACTGCAAATGGAAGCGTTCATTGAGCTTGCTTTTAGATGTGTAA 973
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1597 TTCCCAAGCATTCAAGACTGCAAATGGAAGCGTTCATTGAGCTTGCTTTTAGATGTGTAA 1538
Query 974 GATTCAGACCAGGAGAGAACGTGCCTCGTATGATAGACATCGCAAAAGAACTCAAGAAGA 1033
|||||||||||||||||||||||||||| ||||||||| | |||||||| || |||||||
Sbjct 1537 GATTCAGACCAGGAGAGAACGTGCCTCGCATGATAGACGTTGCAAAAGAGCTTAAGAAGA 1478
Query 1034 TAGAAAAACA 1043
|||| |||||
Sbjct 1477 TAGAGAAACA 1468
> AT3G57700.1 | Symbols: | Protein kinase superfamily protein
| chr3:21384917-21385939 FORWARD LENGTH=1023
Length=1023
Score = 1511 bits (818), Expect = 0.0
Identities = 957/1024 (93%), Gaps = 10/1024 (1%)
Strand=Plus/Plus
Query 22 ATGTTGCGTCTGTTCagaaagaagaagaagaagaagcagaagaaagaaaagGAGATCAAT 81
||||||||||||||| || | |||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGTTGCGTCTGTTC----AG-A-AAGAAGAAGAAGCAGAAGAAAGAAGAGGAGATCAAT 54
Query 82 TTCCAGAAGAATGGGAGCTTATTGTTGGAAGAACTCATTGCAACTTCAGGAGGTAAATAC 141
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 55 CTCCAGAAGAATGGGAGCTTACTGTTGGAAGAACTCATTGCAACTTCAGGAGGTATATAC 114
Query 142 AATCCCATCCGTACGTTTTCTTCCGACCAAATCCTTCAAGCCACAAATCACTTTGACTGG 201
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 115 AATCCCATCCGTACGTTTTCTTCCGACCAAATCCTACAAGCTACAAATCACTTTGACTGG 174
Query 202 AACTACGTAATCTCTGAAGACAGATTCGTGTGGTACAAAGGTATGATTGAAAACAGACTC 261
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 175 AACTACGTAATCTCTGAAGACAGATTCGTGTGGTACAAAGGCATGATTGAAAACAGACCC 234
Query 262 GTACTGATCAAGAAATTCCAAGACTGTTCTGTTTTCGACGCTGACAACTTTTACCGTGAC 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GTACTGATCAAGAAATTCCAAGACTGTTCTGTTTTCGACGCTGACAACTTTTACCGTGAC 294
Query 322 ATTGCGGTTTCATCTTTGATGAGTAGCCATAAGAATGTTCTCAAGCTTC-TAGGGTGTTG 380
||||| |||||||||||||||||||||||||||||||||||||||| || | ||||||||
Sbjct 295 ATTGCTGTTTCATCTTTGATGAGTAGCCATAAGAATGTTCTCAAGC-TCTTGGGGTGTTG 353
Query 381 TCTAGAGTTTCCTCGTCCTGTTCTCGTGTGTGAGTACCCAGAAAATGGAGCTCTAAACTG 440
|||||||||||||||||| |||||||||||||| || |||||| ||||||||||||||||
Sbjct 354 TCTAGAGTTTCCTCGTCCGGTTCTCGTGTGTGAATATCCAGAACATGGAGCTCTAAACTG 413
Query 441 TATAAGACGTGGAAAAGAAGGCGTCCGGCCATTCCCTTGGAATGTAAGGTTGAGAATCGC 500
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 414 TATAAGATGTGGAAAAGAAGGCGTCCGGTCATTCCCTTGGAATGTAAGGTTGAGAATCGC 473
Query 501 CAAGGAGATTGCAGATGCTGTAACGTATCTGCATACTGAATTCCCTAGGACTATAATCCA 560
|||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||
Sbjct 474 CAAGGAGATTGCAGATGCTGTAGCGTATCTTCATACTGAATTCCCCAGGACTATAATCCA 533
Query 561 TAGGGATTTAAAGCTTGCAAATATTTTCCTGGACGAGAATTGGTCCGTC-AAGCTCTCTT 619
|||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||
Sbjct 534 TAGGGATTTAAAGCTTGCAAATATTTTCCTTGACGAGAATTGGTCCG-CTAAGCTCTCTT 592
Query 620 CTTTCAGCCTCAGTGTACTGATTCCAGAAGGAGAAACGGGCGTAAATGACATGGTTTGCA 679
|||||||||||||| || || ||||||| || ||||| ||||||||||||||||||||||
Sbjct 593 CTTTCAGCCTCAGTATAGTGCTTCCAGAGGGTGAAACTGGCGTAAATGACATGGTTTGCA 652
Query 680 AGACATCGAGCTATATCGAGCCCGGTTACCTCAATACAGGTTTGGTCACTGAGAATGTCG 739
|||||| |||||||||||||| | |||| | ||||||||||||||||| ||||||||||
Sbjct 653 GGACATCAAGCTATATCGAGCCTGATTACTTTAATACAGGTTTGGTCACCGAGAATGTCG 712
Query 740 ATATCTATAACCTTGGGATCATCATGCTAGTTCTTTTGAGAGAAAAGTCTGAATACACTT 799
| ||||||| |||||||||||||||||| || |||||| || |||||||||||||| ||
Sbjct 713 ACATCTATAGTCTTGGGATCATCATGCTAATTATTTTGACAGGAAAGTCTGAATACAATT 772
Query 800 CCGAAGTTGCTGTTTATCTTCCTGCATTGCCTGTCTATGTTGGGAAGTTTCTGGAGCGAG 859
| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 773 CAGAAGTCGCTGTTTATCTTCCTGTATTGCCTGTCTATGTTGGGAAGTTTCTGGAGCGAG 832
Query 860 GTTTGTTGACTGAGCTGATAGACCCGTTGATGTTGGACAGCGCGAGTGACGACATTCCCC 919
||||||||||||| || |||||||||| ||| ||||||||| ||||||| |||||||||
Sbjct 833 GTTTGTTGACTGAACTCATAGACCCGTCGATATTGGACAGCACGAGTGATGACATTCCCA 892
Query 920 AGCATTCAAGACTGCAAATGGAAGCGTTCATTGAGCTTGCTTTTAGATGTGTAAGATTCA 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 AGCATTCAAGACTGCAAATGGAAGCGTTCATTGAGCTTGCTTTTAGATGTGTAAGATTCA 952
Query 980 GACCAGGAGAGAACGTGCCTCGTATGATAGACATCGCAAAAGAACTCAAGAAGATAGAAA 1039
|||||||||||||||||||||| ||||||||| | |||||||| || ||||||||||| |
Sbjct 953 GACCAGGAGAGAACGTGCCTCGCATGATAGACGTTGCAAAAGAGCTTAAGAAGATAGAGA 1012
Query 1040 AACA 1043
||||
Sbjct 1013 AACA 1016
> AT3G57770.1 | Symbols: | Protein kinase superfamily protein
| chr3:21397542-21398853 FORWARD LENGTH=1242
Length=1242
Score = 558 bits (302), Expect = 3e-158
Identities = 491/579 (85%), Gaps = 25/579 (4%)
Strand=Plus/Plus
Query 114 ACTCATTGCAACTTCAGGAGGTAAATACAATCCCATCCGTACGTTTTCTTC-CGACCAAA 172
|||||||||| | |||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 159 ACTCATTGCATCGTCAGGAGGTAAATACAATCCCATCCGTACGTTTTCTTCTC-ACCAAA 217
Query 173 TCCTTCAAGCCACAAATC-ACTTTGACTGGAACTACGTAATCTCTGAAGACAGATTCGTG 231
||||| |||| ||||| | |||| ||||||| ||| | |||| || |||||||||||||
Sbjct 218 TCCTTGAAGCTACAAA-CAACTTCGACTGGAGCTATGCAATCGGTGTAGACAGATTCGTG 276
Query 232 TGGTACAAAGGTATGATTGAAAACAGA-CTCGTACTGATCAAGAAAT-TCCAA---G-AC 285
||||||||||||| ||||||||||||| | ||| ||||||||| | | | || | ||
Sbjct 277 TGGTACAAAGGTACGATTGAAAACAGAGC-CGTGCTGATCAAGTACTAT-AAAGGTGAAC 334
Query 286 TGTTCT-GTTTTCGACGCTGACAACTTTTACCGTGACATTGCGGTTTCATCTTTGATGAG 344
|| | ||| ||| ||||||||||||||||||| |||||||||||||| |||||||
Sbjct 335 CCTT-TAACTTT-GACCCTGACAACTTTTACCGTGATATTGCGGTTTCATCGATGATGAG 392
Query 345 TAGCCATAAGAATGTTCTCAAGCTTC-TAGGGTGTTGTCTAGAGTTTCCTCGTCCTGTTC 403
|||||||||||||||||||||| || | |||||||||||||||||||||||||| ||||
Sbjct 393 CAGCCATAAGAATGTTCTCAAGC-TCTTGGGGTGTTGTCTAGAGTTTCCTCGTCCGGTTC 451
Query 404 TCGTGTGTGAGTACCCAGAAAATGGAGCTCTAAACTGTATAAGACGTGGAAAAGAAGG-C 462
|||||||||| ||||||||||| |||||||| || |||| || || | | |||
Sbjct 452 TCGTGTGTGAATACCCAGAAAAGGGAGCTCTTGCCTATATAGGAGGT-GCGGGGGAGGTA 510
Query 463 GTCCGGCCATTCCCTTGGAATGTAAGGTTG-AGAATCGCCAAGGAGATTGCAGATGCTGT 521
|| |||||| |||||| |||||| ||| || ||||| ||||||||||||||||||||
Sbjct 511 ATCAAGCCATTGGCTTGGAGTGTAAGATTGAAG-ATCGCTAAGGAGATTGCAGATGCTGT 569
Query 522 AACGTATCTGCATACTGAATTCCCTAGGACTATAATCCATAGGGATTTAAAGCTTGCAAA 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 570 AACGTATCTGCATACTGAATTCCCTAGGACTATAATCCATAGGGATTTAAAGCTTACAAA 629
Query 582 TATTTTCCTGGACGAGAATTGGTCCG-TCAAGCTCTCTTCTTTCAGCCTCAGTGTACTGA 640
||||||| |||||||||||||| ||| | ||||||||||||||||||||||| ||| |
Sbjct 630 TATTTTCTTGGACGAGAATTGGACCGCT-AAGCTCTCTTCTTTCAGCCTCAGCATACCAA 688
Query 641 TTCCAGAAGGAGAAACGGGCGTA-AATGACATGGTTTGC 678
||||||| ||||| ||| ||| || || || ||||||
Sbjct 689 TTCCAGAGGGAGAGTTGGGGGTAGAA-GATATCGTTTGC 726
> AT3G57765.1 | Symbols: U2.3 | U2.3; snRNA | chr3:21397262-21398132
REVERSE LENGTH=871
Length=871
Score = 409 bits (221), Expect = 3e-113
Identities = 373/443 (84%), Gaps = 23/443 (5%)
Strand=Plus/Minus
Query 114 ACTCATTGCAACTTCAGGAGGTAAATACAATCCCATCCGTACGTTTTCTTC-CGACCAAA 172
|||||||||| | |||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 433 ACTCATTGCATCGTCAGGAGGTAAATACAATCCCATCCGTACGTTTTCTTCTC-ACCAAA 375
Query 173 TCCTTCAAGCCACAAATCA-CTTTGACTGGAACTACGTAATCTCTGAAGACAGATTCGTG 231
||||| |||| ||||| || ||| ||||||| ||| | |||| || |||||||||||||
Sbjct 374 TCCTTGAAGCTACAAA-CAACTTCGACTGGAGCTATGCAATCGGTGTAGACAGATTCGTG 316
Query 232 TGGTACAAAGGTATGATTGAAAACAGA-CTCGTACTGATCAAGAAAT-TCCAAGACTGTT 289
||||||||||||| ||||||||||||| | ||| ||||||||| | | | ||| ||
Sbjct 315 TGGTACAAAGGTACGATTGAAAACAGAGC-CGTGCTGATCAAGTACTATA-AAGG-TGAA 259
Query 290 C--TGT---TTTCGACGCTGACAACTTTTACCGTGACATTGCGGTTTCATCTTTGATGAG 344
| | | ||| ||| ||||||||||||||||||| |||||||||||||| |||||||
Sbjct 258 CCCTTTAACTTT-GACCCTGACAACTTTTACCGTGATATTGCGGTTTCATCGATGATGAG 200
Query 345 TAGCCATAAGAATGTTCTCAAGCTTCTAGGG-TGTTGTCTAGAGTTTCCTCGTCCTGTTC 403
||||||||||||||||||||||| || ||| ||||||||||||||||||||||| ||||
Sbjct 199 CAGCCATAAGAATGTTCTCAAGCT-CTTGGGGTGTTGTCTAGAGTTTCCTCGTCCGGTTC 141
Query 404 TCGTGTGTGAGTACCCAGAAAATGGAGCTCTAAACTGTATAAGACGTG-GAAAAGAAGGC 462
|||||||||| ||||||||||| |||||||| || |||| || ||| | || ||
Sbjct 140 TCGTGTGTGAATACCCAGAAAAGGGAGCTCTTGCCTATATAGGAGGTGCGGGG-GA-GGT 83
Query 463 G-TCCGGCCATTCCCTTGGAATGTAAGGTTGA-GAATCGCCAAGGAGATTGCAGATGCTG 520
|| |||||| |||||| |||||| |||| || |||| |||||||||||||||||||
Sbjct 82 AATCAAGCCATTGGCTTGGAGTGTAAGATTGAAGA-TCGCTAAGGAGATTGCAGATGCTG 24
Query 521 TAACGTATCTGCATACTGAATTC 543
|||||||||||||||||||||||
Sbjct 23 TAACGTATCTGCATACTGAATTC 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52409368980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5