BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938769
Length=505
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57840.1 | Symbols: | Plant self-incompatibility protein S1... 460 4e-129
AT3G57854.1 | Symbols: | pseudogene similar to self-incompatib... 324 6e-88
> AT3G57840.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:21422823-21423287 FORWARD LENGTH=465
Length=465
Score = 460 bits (249), Expect = 4e-129
Identities = 406/478 (85%), Gaps = 26/478 (5%)
Strand=Plus/Plus
Query 21 ATGGCTTCCCATAGAAATCTGATAATGCTTGTCACACTA---TCGTTGCTCATGAAAGTA 77
||||||||||| ||||| ||||||||| |||| | |||| ||||||||||||||||||
Sbjct 1 ATGGCTTCCCAAAGAAAACTGATAATGGTTGTGATACTATCGTCGTTGCTCATGAAAGTA 60
Query 78 GCGTTATCTCAAAACGGTGTAGTGATGGGTAAGAATATATTCAAATGGGAATTTTTTCCG 137
|| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 GCATTATCTCAATACGGTGTAGTGATGGGTAAGAGTATATTCAAATGGGAATTTTTTCC- 119
Query 138 AA-AATATTTGTATACGTCTCCAACGATATCGAAGGTAGATTGGACCTACATTCTAGTTG 196
|| |||| ||||||| || | |||||||||| |||| | |||| ||||||||| ||||
Sbjct 120 AATGATATCTGTATACATCACAAACGATATCGGAGGTGGTTTGGTGCTACATTCTGGTTG 179
Query 197 CATTGAGA--A-CGGAAATACGGTTTC-TCGTTACCGAG-GA-TTAATTTTACCGGGGCG 250
|| | | | | ||||| ||| || ||| || || || || |||| || ||| |
Sbjct 180 --TT-ATACTAGCAGAAAT-GGGTATCGTCG-TA-TTAGAGACTT--TTTT-CCAGGGAG 230
Query 251 TAGT-AAAGA-ATTCGTTCATTTCACGAAAACTTTCTGGGGAGGAAATCGCTATGTTTGT 308
|| | ||| | ||||| | | |||| |||||||| ||||||| ||| ||||||| ||||
Sbjct 231 TA-TGAAA-ATATTCGCTGAATTCAGGAAAACTTACTGGGGACGAACTCGCTATCATTGT 288
Query 309 GAATTTAGATTTGGGGGTGAAACACAAACACATCGTTTTACTATTTATAGAGATAGCAGA 368
|||||||||||||| | ||||||||||| |||||||||| || |||||| ||||| ||||
Sbjct 289 GAATTTAGATTTGGAGATGAAACACAAATACATCGTTTTTCTCTTTATAAAGATATCAGA 348
Query 369 GATAATATTGACAAATATCAGTGCAGAAACTGTTTTTGGTCCATCAGAAGGAATGGACCT 428
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 349 GATAATATTGACAAATATCAGTGCAGACACTGTTTTTGGTCCATCAGAAGGAATGGACCT 408
Query 429 TGTGCTTTTAATTCACATACTG-AAAGATATGATATTTGTTATGCTTGGGATAGATAA 485
|||||| ||||||||||||||| ||| |||||||||||||||||||||||||| ||||
Sbjct 409 TGTGCTCTTAATTCACATACTGGAAA-ATATGATATTTGTTATGCTTGGGATAAATAA 465
> AT3G57854.1 | Symbols: | pseudogene similar to self-incompatibility
| chr3:21425479-21425926 FORWARD LENGTH=448
Length=448
Score = 324 bits (175), Expect = 6e-88
Identities = 378/470 (80%), Gaps = 38/470 (8%)
Strand=Plus/Plus
Query 21 ATGGCTTCCCATAGAAATCTGATAATGCTTGTCACACTATCGTTGCTCATGAAAGTAGCG 80
||||||||||||||||| |||||||||||||| | |||||| ||||| |||||||||||
Sbjct 1 ATGGCTTCCCATAGAAAACTGATAATGCTTGTGATACTATCCTTGCTTATGAAAGTAGCA 60
Query 81 TTATCTCAAAACGGTGTAGTGATGGGTAAGAATATATTCAAATGGGAATTTT-TTCCGAA 139
||||||||||||||||||||||||||| ||||||||||||||| ||| |||| || |||
Sbjct 61 TTATCTCAAAACGGTGTAGTGATGGGTGAGAATATATTCAAATCGGATTTTTCTTTTGAA 120
Query 140 AATATTTGTATACGTCTCCAACGATATCGAAGGTAGATTGGACCTACATTCTAGTTGCAT 199
||||| ||||||| || | |||||||||| || | | |||| ||| |||||||||| |
Sbjct 121 AATATATGTATACATCACAAACGATATCGGAGATGGTTTGGTGCTAAATTCTAGTTG--T 178
Query 200 TG-AG-AA-CGGAAATACGGTTTCTCGTTACCGAGGATTAATTTTACCGGGGCGTA-GTA 255
| || || |||| || || | ||| | | || ||||||||||||||| | |
Sbjct 179 CGTAGTAATGGGAATTA----TT-AAG--ACC-A--AGTATTTTTACCGGGGCGTACG-A 227
Query 256 AAGAATTCGTTCA-TTTCACGAAAACTTT-CTGGGGAGGAAATCGCT-ATGTTTGTGA-A 311
||||||||||| ||| | ||||| ||| | ||||| || ||| | | |||||| |
Sbjct 228 CGGAATTCGTTCAGTTT-AGGAAAAGTTTAC-GGGGACTAACTCG-TAACGTTTGT-ATG 283
Query 312 TTTAGATTTGGGGGTGAAACACAAA-CACATCGTTTTACTATTTATAGAGATAGCAGAGA 370
|||| |||| ||| || ||| |||| ||| |||||||||||| ||||||||||||
Sbjct 284 TTTATATTT---GGT----CATAAAGCACAACGTATTACTATTTATAAAGATAGCAGAGA 336
Query 371 TAATATTGACAAATATCAGTGCAGAAACTGTTTTTGGTCCATCAGAAG-GAATGGACCTT 429
|||||||||||||||||||||| ||||||| ||||||||||||| | | | ||||| |||
Sbjct 337 TAATATTGACAAATATCAGTGCTGAAACTGATTTTGGTCCATCATA-GTGTATGGAGCTT 395
Query 430 GTGCTTTTAATTCACATACT-GAAAGATATGATATTTGTTATGCTTGGGA 478
||||| || || |||| ||| || | ||||||| ||||||||||||||||
Sbjct 396 GTGCTCTTGATGCACAGACTCGAGA-ATATGATCTTTGTTATGCTTGGGA 444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24112390560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5